Pregenerated sensors for S100A13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042312

Ensembl transcript IDs: ENSMUST00000048138.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	AGAAGAAAGCTTTATTTGGGGGCAGGGGTGGAGTGCTaGCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCA	+
Preference number: 3 (lower is better) Translates to: RRKLYLGAGVEC*LALPNRSCWTA Trigger: TGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTGCCCCCAAATAAAGCTTTCTTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
3UTR GCA 72 bp	TCAAGAAGAAAGCTTTATTTGGGGGCAGGGGTGGAGTaGTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACA	+
Preference number: 3 (lower is better) Translates to: SRRKLYLGAGVE*CLALPNRSCWT Trigger: TGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTGCCCCCAAATAAAGCTTTCTTCTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR TCA 90 bp	CAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCTGGGCCTTCTCCTTCCTaGCTTCCTTTGCCAGCTCTC	+
Preference number: 4 (lower is better) Translates to: QGWSAAWLCPTGPAGQQAGPSPS*LPLPAL Trigger: GAGAGCTGGCAAAGGAAGTCAGGAAGGAGAAGGCCC...AGCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR TCA 90 bp	GCAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCCTCAGCTCTGAGTCCTaGTTCACATCCAAGGTCTTC	+
Preference number: 4 (lower is better) Translates to: AGVECCLALPNRSCWTASLSSES*FTSKVF Trigger: GAAGACCTTGGATGTGAATCAGGACTCAGAGCTGAG...GCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR GCA 90 bp	CAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCTGCGTCCTTCCCGCCCTaGAAAGGTGAAGAAAGTAGA	+
Preference number: 4 (lower is better) Translates to: QGWSAAWLCPTGPAGQQAASFPP*KGEESR Trigger: TCTACTTTCTTCACCTTTGCAGGGCGGGAAGGACGC...AGCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR GCA 90 bp	GCAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCCTTCCTGACTTCCTTTaGCAGCTCTCCAATCAGTCT	+
Preference number: 4 (lower is better) Translates to: AGVECCLALPNRSCWTASLPDFL*QLSNQS Trigger: AGACTGATTGGAGAGCTGGCAAAGGAAGTCAGGAAG...GCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR CAA 90 bp	GCAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCGAGCAAATGAGGCAGTaGCTGAGTGGCCAGTTCCTT	+
Preference number: 5 (lower is better) Translates to: AGVECCLALPNRSCWTASEQMRQ*LSGQFL Trigger: AAGGAACTGGCCACTCAGCAACTGCCTCATTTGCTC...GCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS-3UTR CAA 90 bp	CAGGGGTGGAGTGCTGCCTGGCTCTGCCCAACAGGTCCTGCTGGACAGCAAGCTAGTTCCTTAAATTCATaGATGTTCAGGCTGCCTTTG	+
Preference number: 5 (lower is better) Translates to: QGWSAAWLCPTGPAGQQASSLNS*MFRLPL Trigger: CAAAGGCAGCCTGAACATCAATGAATTTAAGGAACT...AGCTTGCTGTCCAGCAGGACCTGTTGGGCAGAGCCAGGCAGCACTCCACCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048138.8
CDS CAA 72 bp	GCCAGTTCCTTAAATTCATTGATGTTCAGGCTGCCTTaGCGTCCTTCCCGCCCTGCAAAGGTGAAGAAAGTA	+
Preference number: 6 (lower is better) Translates to: ASSLNSLMFRLP*RPSRPAKVKKV Trigger: TACTTTCTTCACCTTTGCAGGGCGGGAAGGACGCAAAGGCAGCCTGAACATCAATGAATTTAAGGAACTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048138.8