Pregenerated sensors for S100A11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027907Ensembl transcript IDs: ENSMUST00000029515.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTGTGGGCTCAGTGCAGGTGTaGATGGGGTCGGGGGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: WHCFIFASRRGIHVVVGVGSVQV*MGSGEV Trigger: CACCTCCCCCGACCCCATCCACACCTGCACTGAGCC...CACACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR TCA 90 bp | GGCTCAGTGCAGGTGTGGATGGGGTCGGGGGAGGTGATGACTTGGTGGTTGGATGCTGCCCGTCACAGTTaGGGTCCAGCTTCTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: GSVQVWMGSGEVMTWWLDAARHS*GPASSS Trigger: TGATGAAGAAGCTGGACCTCAACTGTGACGGGCAGC...ATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACCTGCACTGAGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR TCA 90 bp | GGTGTGGATGGGGTCGGGGGAGGTGATGACTTGGTGGTTGGATGGGAACTAAGACCAGCTCTGTGTTCATaGAGGAAAGGAATTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: GVDGVGGGDDLVVGWELRPALCS*RKGIQF Trigger: AAACTGAATTCCTTTCCTTCATGAACACAGAGCTGG...TCTTAGTTCCCATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CCA 90 bp | GTGCAGGTGTGGATGGGGTCGGGGGAGGTGATGACTTGGTGGTTGGATGGGAACAAAGGAATTCAGTTTTaGAGAGTTGAGTGTTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: VQVWMGSGEVMTWWLDGNKGIQF*RVECCF Trigger: GAAACAACACTCAACTCTCCAAAACTGAATTCCTTT...GTTCCCATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACCTGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR TCA 90 bp | AAATGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTTCTGGGAAGTTTGGATaGAAGAATCATGGCACGCTA | + |
|
Preference number: 4 (lower is better) Translates to: KWHCFIFASRRGIHVVVGSGKFG*KNHGTL Trigger: TAGCGTGCCATGATTCTTTCATCCAAACTTCCCAGA...ACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CCA 90 bp | ATGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTGTTGGATGAAAGAATCATaGCACGCTATAGCTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: MALFYFCQQAWDTCCGRCWMKES*HAIAKP Trigger: TGGCTTAGCTATAGCGTGCCATGATTCTTTCATCCA...ACACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CAA 90 bp | GGCTCAGTGCAGGTGTGGATGGGGTCGGGGGAGGTGATGACTTGGTGGTTGGATTTCAGTTTTGGAGAGTaGAGTGTTGTTTCCATCCTT | + |
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Preference number: 5 (lower is better) Translates to: GSVQVWMGSGEVMTWWLDFSFGE*SVVSIL Trigger: AAGGATGGAAACAACACTCAACTCTCCAAAACTGAA...ATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACCTGCACTGAGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CAA 90 bp | GGTGTGGATGGGGTCGGGGGAGGTGATGACTTGGTGGTTGGATGGGAACTAAGATCGCTTCTGGGAAGTTaGGATGAAAGAATCATGGCA | + |
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Preference number: 5 (lower is better) Translates to: GVDGVGGGDDLVVGWELRSLLGS*DERIMA Trigger: TGCCATGATTCTTTCATCCAAACTTCCCAGAAGCGA...TCTTAGTTCCCATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CAA 90 bp | ATGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTGTAGCTGCCCGTCACAGTaGAGGTCCAGCTTCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: MALFYFCQQAWDTCCGRCSCPSQ*RSSFFI Trigger: GATGAAGAAGCTGGACCTCAACTGTGACGGGCAGCT...ACACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CAA 90 bp | ATGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTGTCTTCCCGCTGTACTTTaGGAAAACAGCAATCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: MALFYFCQQAWDTCCGRCLPAVL*ENSNQG Trigger: TCCCTGATTGCTGTTTTCCAAAAGTACAGCGGGAAG...ACACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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| CDS-3UTR CAA 90 bp | AAATGGCATTGTTTTATTTTTGCCAGCAGGCGTGGGATACATGTTGTGGTAGGTAAGCCACCAATGAGGTaGAGAAACTCTTGGAAATCT | + |
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Preference number: 5 (lower is better) Translates to: KWHCFIFASRRGIHVVVGKPPMR*RNSWKS Trigger: AGATTTCCAAGAGTTTCTCAACCTCATTGGTGGCTT...ACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029515.5 |
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