Pregenerated sensors for S100A10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041959Ensembl transcript IDs: ENSMUST00000045756.14, ENSMUST00000170612.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTCCTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGATTCCTCAAGTGGAACTCCCGTTCCATaGGCACTCTCAGGTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: FPKGPDLLTRSSGADSSSGTPVP*ALSGPP Trigger: AGGAGGACCTGAGAGTGCTCATGGAACGGGAGTTCC...ACTTGAGGAATCTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CCA 90 bp | CTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGATTCCTCAAGTGACCTTGCCATCTCGGCACTaGTCCAGGTCCTTCATTATT | + |
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Preference number: 4 (lower is better) Translates to: LRVLICSQEAVGQIPQVTLPSRH*SRSFII Trigger: AATAATGAAGGACCTGGACCAGTGCCGAGATGGCAA...GGTCACTTGAGGAATCTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CCA 90 bp | TCATTTGCACATTTCCTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGGCATCATGGTTTCCATaGCGTGCTCCATTTGGGATG | + |
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Preference number: 4 (lower is better) Translates to: SFAHFLRVLICSQEAVGQASWFP*RAPFGM Trigger: CATCCCAAATGGAGCACGCCATGGAAACCATGATGC...CTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAGGAAATGTGCAAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CCA 90 bp | TCATTTGCACATTTCCTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGAGTGATAGAAAGCTCTaGAAGCCCACTTTGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: SFAHFLRVLICSQEAVGQSDRKL*KPTLPS Trigger: AGATGGCAAAGTGGGCTTCCAGAGCTTTCTATCACT...CTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAGGAAATGTGCAAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR GCA 90 bp | CAGATTGTTGAATTGGAGTTGGATCTCATTTGCACATTTCCTAAGGGTCCTGATTCTGGAAGCCCACTTTaGCATCTCGGCACTGGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QIVELELDLICTFPKGPDSGSPL*HLGTGP Trigger: TGGACCAGTGCCGAGATGGCAAAGTGGGCTTCCAGA...ATCAGGACCCTTAGGAAATGTGCAAATGAGATCCAACTCCAATTCAACAATCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR GCA 90 bp | GCACATTTCCTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGATTCCTTACTTCTTCCCCTTCTaGTTCATGTTTACTACAAAA | + |
|
Preference number: 4 (lower is better) Translates to: AHFLRVLICSQEAVGQIPYFFPF*FMFTTK Trigger: TTTTGTAGTAAACATGAAGCAGAAGGGGAAGAAGTA...AGGAATCTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAGGAAATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR GCA 90 bp | CAGATTGTTGAATTGGAGTTGGATCTCATTTGCACATTTCCTAAGGGTCCTGATAAAATAGTCATTGCATaGAATGGTGAGCCCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QIVELELDLICTFPKGPDKIVIA*NGEPCH Trigger: GTGGCAGGGCTCACCATTGCATGCAATGACTATTTT...ATCAGGACCCTTAGGAAATGTGCAAATGAGATCCAACTCCAATTCAACAATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CAA 90 bp | TGCACATTTCCTAAGGGTCCTGATCTGCTCACAAGAAGCAGTGGGGCAGATTCCCTCTCAGGTCCTCCTTaGTCAAGTGGTCTTTGTCGC | + |
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Preference number: 5 (lower is better) Translates to: CTFPKGPDLLTRSSGADSLSGPP*SSGLCR Trigger: GCGACAAAGACCACTTGACAAAGGAGGACCTGAGAG...GGAATCTGCCCCACTGCTTCTTGTGAGCAGATCAGGACCCTTAGGAAATGTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CAA 90 bp | GATCTGCTCACAAGAAGCAGTGGGGCAGATTCCTCAAGTGACCCCGTGGGTGAAAGCCAGAGGGTCCTTTaGATTTTCCAAAAACCCAGG | + |
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Preference number: 5 (lower is better) Translates to: DLLTRSSGADSSSDPVGESQRVL*IFQKPR Trigger: CCTGGGTTTTTGGAAAATCAAAAGGACCCTCTGGCT...TTCACCCACGGGGTCACTTGAGGAATCTGCCCCACTGCTTCTTGTGAGCAGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS-3UTR CAA 90 bp | AGATTGTTGAATTGGAGTTGGATCTCATTTGCACATTTCCTAAGGGTCCTGATCCTCTGGAAGCCCACTTaGCCATCTCGGCACTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: RLLNWSWISFAHFLRVLILWKPT*PSRHWS Trigger: GGACCAGTGCCGAGATGGCAAAGTGGGCTTCCAGAG...GATCAGGACCCTTAGGAAATGTGCAAATGAGATCCAACTCCAATTCAACAATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045756.14 |
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| CDS TCA 72 bp | TTTGATTTTCCAAAAACCCAGGGAACTCCCGTTCCATaGGCACTCTCAGGTCCTCCTTTGTCAAGTGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FDFPKTQGTPVP*ALSGPPLSSGL Trigger: AAGACCACTTGACAAAGGAGGACCTGAGAGTGCTCATGGAACGGGAGTTCCCTGGGTTTTTGGAAAATCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045756.14 ENSMUST00000170612.2 |
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| CDS TCA 72 bp | TCATGTTTACTACAAAATAGTCATTGCATGCAATGGTaGGCCCTGCCACTAGTGATAGAAAGCTCTGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: SCLLQNSHCMQW*ALPLVIESSGS Trigger: GCTTCCAGAGCTTTCTATCACTAGTGGCAGGGCTCACCATTGCATGCAATGACTATTTTGTAGTAAACATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045756.14 ENSMUST00000170612.2 |
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