Pregenerated sensors for S100A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044080Ensembl transcript IDs: ENSMUST00000060738.9, ENSMUST00000107340.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTaGACGTCGAGACTGGGCAAGGATGGGGACATAGGGAGGTACAGG | + |
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Preference number: 1 (lower is better) Translates to: IKTSGRSGLPLLCPW*TSRLGKDGDIGRYR Trigger: CCTGTACCTCCCTATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 90 bp | GAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTaGCCTTGGTGCACGTCGAGACTGGGCAAGGATGGGGACATAGGG | + |
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Preference number: 1 (lower is better) Translates to: EGFIKTSGRSGLPLL*PWCTSRLGKDGDIG Trigger: CCCTATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 90 bp | CTGGTGAGAGAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTaGCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGATG | + |
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Preference number: 1 (lower is better) Translates to: LVREKALLKQVADLD*HSCALGARRDWARM Trigger: CATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTCTCTCACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| 3UTR CCA 90 bp | TTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTaGTGCACGTCGAGACTGGGCAAGGATGGGGACATAGGGAGGTAC | + |
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Preference number: 1 (lower is better) Translates to: FIKTSGRSGLPLLCP*CTSRLGKDGDIGRY Trigger: GTACCTCCCTATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 90 bp | GGAAATCTTGACAAGTGGGAGAGGAAGGGCACTGCTCACAGACTGTaGTCAACTGGTCTCCCAGAAGAAGTTGTTACAAGCCACTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: GNLDKWERKGTAHRL*STGLPEEVVTSHCE Trigger: CTCACAGTGGCTTGTAACAACTTCTTCTGGGAGACCAGTTGAGCACAGTCTGTGAGCAGTGCCCTTCCTCTCCCACTTGTCAAGATTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR-3UTR CCA 90 bp | GATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGATGGAGACTGGGCAAGGATaGGGACATAGGGAGGTACAG | + |
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Preference number: 2 (lower is better) Translates to: DLDCHSCALGARRDWARMETGQG*GHREVQ Trigger: CTGTACCTCCCTATGTCCCCATCCTTGCCCAGTCTC...CATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR-3UTR TCA 90 bp | CAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGACTAAAGGGGAAATCTTaGCAAGTGGGAGAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: QIWTATLVPLVHVETGQGLKGKS*QVGEEG Trigger: CCCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAG...TCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGACAAGTGGGAGAGGAAGGGCACTGCTCACAGACTGTGCTCAACTGGTCTCCTAAAGGGGAAATCTTaGCAAGTGGGAGAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: LDKWERKGTAHRLCSTGLLKGKS*QVGEEG Trigger: CCCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAG...GAGACCAGTTGAGCACAGTCTGTGAGCAGTGCCCTTCCTCTCCCACTTGTCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR-3UTR CCA 90 bp | AACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGAAATCTTGACAAGTaGGAGAGGAAGGGCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: NKWQIWTATLVPLVHVETGNLDK*ERKGTA Trigger: AGCAGTGCCCTTCCTCTCCCACTTGTCAAGATTTCC...AGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGTCTCCCAGAAGAAGTTGTTACAAGCCACTGTGAGAGCAGCCACCAGCACAGGAAATCTTGACAAGTaGGAGAGGAAGGGCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: LVSQKKLLQATVRAATSTGNLDK*ERKGTA Trigger: AGCAGTGCCCTTCCTCTCCCACTTGTCAAGATTTCC...TGTGCTGGTGGCTGCTCTCACAGTGGCTTGTAACAACTTCTTCTGGGAGACCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR CAA 90 bp | AGAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTaGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGATGGGGACATA | + |
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Preference number: 2 (lower is better) Translates to: REGFIKTSGRSGLPL*CPWCTSRLGKDGDI Trigger: TATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 72 bp | AGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTaGACGTCGAGACTGGGCAAGGATGGGGACATAGGG | + |
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Preference number: 3 (lower is better) Translates to: SGRSGLPLLCPW*TSRLGKDGDIG Trigger: CCCTATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR-3UTR CAA 90 bp | GGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGCTAAAGGGGAAATCTaGACAAGTGGGAGAGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: GRSGLPLLCPWCTSRLGKAKGEI*TSGRGR Trigger: CCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAGC...CTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR CCA 72 bp | ACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTaGTGCACGTCGAGACTGGGCAAGGATGGGGACATA | + |
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Preference number: 3 (lower is better) Translates to: TSGRSGLPLLCP*CTSRLGKDGDI Trigger: TATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 72 bp | ATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTaGCCTTGGTGCACGTCGAGACTGGGCAAGGATGGG | + |
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Preference number: 3 (lower is better) Translates to: IKTSGRSGLPLL*PWCTSRLGKDG Trigger: CCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR GCA 72 bp | GACAAGTGGGAGAGGAAGGGCACTGCTCACAGACTGTaGTCAACTGGTCTCCCAGAAGAAGTTGTTACAAGC | + |
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Preference number: 3 (lower is better) Translates to: DKWERKGTAHRL*STGLPEEVVTS Trigger: GCTTGTAACAACTTCTTCTGGGAGACCAGTTGAGCACAGTCTGTGAGCAGTGCCCTTCCTCTCCCACTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR GCA 72 bp | GAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTaGCACTCTTGTGCCCTTGGTGCACGTCGAGACTGG | + |
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Preference number: 3 (lower is better) Translates to: EKALLKQVADLD*HSCALGARRDW Trigger: CCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR-3UTR CAA 90 bp | GTGAGAGAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCTAAAGGGGAAATCTaGACAAGTGGGAGAGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: VREKALLKQVADLDCHSCAKGEI*TSGRGR Trigger: CCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAGC...ACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTCTCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR TCA 90 bp | AGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCTGTTACAAGCCACTGTaGGAGCAGCCACCAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: SGRSGLPLLCPWCTSRLGCYKPL*EQPPAQ Trigger: TTGTGCTGGTGGCTGCTCTCACAGTGGCTTGTAACA...GCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| CDS-3UTR GCA 90 bp | AGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCCTTGTCCACAGCATCTaGATCCTTCTGGACATCCAG | + |
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Preference number: 4 (lower is better) Translates to: SGRSGLPLLCPWCTSRLGLVHSI*ILLDIQ Trigger: CTGGATGTCCAGAAGGATGCAGATGCTGTGGACAAG...GCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| CDS-3UTR GCA 90 bp | CTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGATGGGGCTTGTCCACAGCATCTaGATCCTTCTGGACCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: LDCHSCALGARRDWARMGLVHSI*ILLDLN Trigger: ATTGAGGTCCAGAAGGATGCAGATGCTGTGGACAAG...CCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR CAA 72 bp | GGTGGGGTGAGGAGCAAGCACGCTAAAGGGGAAATCTaGACAAGTGGGAGAGGAAGGGCACTGCTCACAGAC | + |
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Preference number: 4 (lower is better) Translates to: GGVRSKHAKGEI*TSGRGRALLTD Trigger: GTCTGTGAGCAGTGCCCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAGCGTGCTTGCTCCTCACCCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| 3UTR CAA 72 bp | AACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTaGGTGCACGTCGAGACTGGGCAAGGATGGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: NKWQIWTATLVP*VHVETGQGWGH Trigger: ATGTCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR GCA 90 bp | AAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGACCTCAATCCTGTaGTTACATCCAGGAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: KQVADLDCHSCALGARRDWTSIL*LHPGSQ Trigger: CTGGCTTCCTGGATGTAAGCACAGGATTGAGGTCCA...GTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| 3UTR CAA 72 bp | TTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTaGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FIKTSGRSGLPL*CPWCTSRLGKD Trigger: ATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR CCA 90 bp | GCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCAGCATCTGCATCCTTCTaGACCTCAATCCTGTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: ALLKQVADLDCHSCALGAASASF*TSILCL Trigger: TAAGCACAGGATTGAGGTCCAGAAGGATGCAGATGC...TGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107340.2 |
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| CDS-3UTR CCA 90 bp | GTGAGAGAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTGCATCTGCATCCTTCTaGACATCCAGGAAGCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: VREKALLKQVADLDCHSCASASF*TSRKPE Trigger: TTCTGGCTTCCTGGATGTCCAGAAGGATGCAGATGC...ACAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTCTCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| CDS-3UTR CAA 90 bp | TGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGGGCAAGGATGGGGATGGGCATGGAACACATaGATGAGGGTCTCCATGGCA | + |
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Preference number: 5 (lower is better) Translates to: WTATLVPLVHVETGQGWGWAWNT*MRVSMA Trigger: TGCCATGGAGACCCTCATCAATGTGTTCCATGCCCA...TCCCCATCCTTGCCCAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR CAA 90 bp | ACAAGTGGCAGATCTGGACTGCCACTCTTGTGCCCTTGGTGCACGTCGAGACTGTGGGCATGGAACACATaGATGAGGGTCTCCATGGCA | + |
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Preference number: 5 (lower is better) Translates to: TSGRSGLPLLCPWCTSRLWAWNT*MRVSMA Trigger: TGCCATGGAGACCCTCATCAATGTGTTCCATGCCCA...CAGTCTCGACGTGCACCAAGGGCACAAGAGTGGCAGTCCAGATCTGCCACTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR CAA 90 bp | AGCAAGCACGCTAAAGGGGAAATCTTGACAAGTGGGAGAGGAAGGGCACTGCTCTTGCTCAGCTTATATTaGTCCCCTTCCTTGCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: SKHAKGEILTSGRGRALLLLSLY*SPSLPE Trigger: TTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAA...GAGCAGTGCCCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAGCGTGCTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR CAA 90 bp | GTGAGGAGCAAGCACGCTAAAGGGGAAATCTTGACAAGTGGGAGAGGAAGGGCAAGTTCCTTCATTACCTaGTCCACAGCATCTGCATCC | + |
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Preference number: 5 (lower is better) Translates to: VRSKHAKGEILTSGRGRASSFIT*STASAS Trigger: GGATGCAGATGCTGTGGACAAGGTAATGAAGGAACT...TGCCCTTCCTCTCCCACTTGTCAAGATTTCCCCTTTAGCGTGCTTGCTCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| CDS GCA 90 bp | GGAAGCCAGAAAGTTCAGTTTGTAGCAGGTCTTTCAGTTCTTTCTTaGTCAGCTTATATTTGTCCCCTTCCTTGCCCGAATGGGCATGGA | + |
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Preference number: 5 (lower is better) Translates to: GSQKVQFVAGLSVLS*SAYICPLPCPNGHG Trigger: TCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACTGAAAGACCTGCTACAAACTGAACTTTCTGGCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGAGAGAAGGCTTTATTAAAACAAGTGGCAGATCTGGACTGCCACTCTTGTTGCTCAGCTTATATTaGTCCCCTTCCTTGCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: GEREGFIKTSGRSGLPLLLLSLY*SPSLPE Trigger: TTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAA...CAAGAGTGGCAGTCCAGATCTGCCACTTGTTTTAATAAAGCCTTCTCTCTCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CCA 72 bp | TTGCTCAGCTTATATTTGTCCCCTTCCTTGCCCGAATaGGCATGGAACACATTGATGAGGGTCTCCATGGCA | + |
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Preference number: 6 (lower is better) Translates to: LLSLYLSPSLPE*AWNTLMRVSMA Trigger: TGCCATGGAGACCCTCATCAATGTGTTCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CAA 90 bp | AAGTCCACTTCCCCATCTCCGTTTTCATCCAGTTCCTTCATTACCTaGTCCACAGCATCTGCATCCTTCTGGACATCCAGGAAGCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: KSTSPSPFSSSSFIT*STASASFWTSRKPE Trigger: TTCTGGCTTCCTGGATGTCCAGAAGGATGCAGATGCTGTGGACAAGGTAATGAAGGAACTGGATGAAAACGGAGATGGGGAAGTGGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060738.9 |
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| CDS CAA 90 bp | AGGTCTTTCAGTTCTTTCTTGCTCAGCTTATATTTGTCCCCTTCCTaGCCCGAATGGGCATGGAACACATTGATGAGGGTCTCCATGGCA | + |
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Preference number: 6 (lower is better) Translates to: RSFSSFLLSLYLSPS*PEWAWNTLMRVSMA Trigger: TGCCATGGAGACCCTCATCAATGTGTTCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACTGAAAGACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CAA 90 bp | AGGAAGCCAGAAAGTTCAGTTTGTAGCAGGTCTTTCAGTTCTTTCTaGCTCAGCTTATATTTGTCCCCTTCCTTGCCCGAATGGGCATGG | + |
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Preference number: 6 (lower is better) Translates to: RKPESSVCSRSFSSF*LSLYLSPSLPEWAW Trigger: CCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACTGAAAGACCTGCTACAAACTGAACTTTCTGGCTTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CAA 72 bp | AGTTCTTTCTTGCTCAGCTTATATTTGTCCCCTTCCTaGCCCGAATGGGCATGGAACACATTGATGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: SSFLLSLYLSPS*PEWAWNTLMRV Trigger: GACCCTCATCAATGTGTTCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CAA 72 bp | AGCAGGTCTTTCAGTTCTTTCTTGCTCAGCTTATATTaGTCCCCTTCCTTGCCCGAATGGGCATGGAACACA | + |
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Preference number: 6 (lower is better) Translates to: SRSFSSFLLSLY*SPSLPEWAWNT Trigger: TGTGTTCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACTGAAAGACCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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| CDS CAA 90 bp | TCAGTTTGTAGCAGGTCTTTCAGTTCTTTCTTGCTCAGCTTATATTaGTCCCCTTCCTTGCCCGAATGGGCATGGAACACATTGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: SVCSRSFSSFLLSLY*SPSLPEWAWNTLMR Trigger: CCTCATCAATGTGTTCCATGCCCATTCGGGCAAGGAAGGGGACAAATATAAGCTGAGCAAGAAAGAACTGAAAGACCTGCTACAAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060738.9 ENSMUST00000107340.2 |
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