Pregenerated sensors for RYK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032547Ensembl transcript IDs: ENSMUST00000035142.8, ENSMUST00000175883.8, ENSMUST00000176198.8
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTaGGCTGCACGAGGGGCATCCGTGACAGACAGGCACTTTCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: LLRLGDLETVCPCRH*AARGASVTDRHFLL Trigger: CAGAAGAAAGTGCCTGTCTGTCACGGATGCCCCTCGTGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 ENSMUST00000176198.8 |
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| 3UTR TCA 90 bp | AGTCCTTGTAGGAGTAACTCCAACTTCTTAACAGGCCCTGGCGGCTaGGCAGAGTCAGCTGTTCTTCTGTTAGGGTTTTGGAACCTGAGT | + |
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Preference number: 1 (lower is better) Translates to: SPCRSNSNFLTGPGG*AESAVLLLGFWNLS Trigger: ACTCAGGTTCCAAAACCCTAACAGAAGAACAGCTGACTCTGCTCAGCCGCCAGGGCCTGTTAAGAAGTTGGAGTTACTCCTACAAGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR CCA 90 bp | ACAGCAAACCCCTACACTGATGTAAAACACACGCGTGGAAGTCGTTaGCGCTGCATGGACAGGGTCATAAATAGTTCTGCTAGTGTTTTT | + |
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Preference number: 1 (lower is better) Translates to: TANPYTDVKHTRGSR*RCMDRVINSSASVF Trigger: AAAAACACTAGCAGAACTATTTATGACCCTGTCCATGCAGCGCCAACGACTTCCACGCGTGTGTTTTACATCAGTGTAGGGGTTTGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR GCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGCTGCAGGCACTGCGCTaGACGAGGGGCATCCGTGAC | + |
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Preference number: 2 (lower is better) Translates to: PQTHNNRSTGSVRSSAQALQALR*TRGIRD Trigger: GTCACGGATGCCCCTCGTGCAGCGCAGTGCCTGCAG...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR GCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGTGTTTTCCACAAGCCTaGCCCAGCCTTCTTCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: PQTHNNRSTGSVRSSAQACFPQA*PSLLPA Trigger: AGCTGGAAGAAGGCTGGGGCAGGCTTGTGGAAAACA...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGAGCTCACAGGAAAGCTaGCTGAGATGTGAACTCAGA | + |
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Preference number: 2 (lower is better) Translates to: PQTHNNRSTGSVRSSAQASSQES*LRCELR Trigger: TCTGAGTTCACATCTCAGTCAGCTTTCCTGTGAGCT...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR GCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTTGCCCCTGCAGGCACTaGGCTGCACGAGGGGCATCC | + |
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Preference number: 2 (lower is better) Translates to: LRPASPNVSRAMVTKQAICPCRH*AARGAS Trigger: GGATGCCCCTCGTGCAGCGCAGTGCCTGCAGGGGCA...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGTCATCGTTAAAAGCTaGGGTTTGGAAGCACTGCTA | + |
|
Preference number: 2 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAVIVKS*GLEALL Trigger: TAGCAGTGCTTCCAAACCTCAGCTTTTAACGATGAC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGAAAAGTACCGCATTTTaGAGACAAACCACTCCCAAA | + |
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Preference number: 2 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAKSTAF*RQTTPK Trigger: TTTGGGAGTGGTTTGTCTTCAAAATGCGGTACTTTT...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAACAGCGTGGAACTCTGTaGGGCACTGGACCAGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: CELRPASPNVSRAMVTKQQRGTL*GTGPAA Trigger: AGCAGCTGGTCCAGTGCCTCACAGAGTTCCACGCTG...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGAGCAAACCCCTACACTaGTGTAAAACACACGCGTGG | + |
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Preference number: 2 (lower is better) Translates to: ELRPASPNVSRAMVTKQASKPLH*CKTHAW Trigger: CCACGCGTGTGTTTTACATCAGTGTAGGGGTTTGCT...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGGAAGGAGGTTTCTGTaGTGCAGACCTCGAAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: CELRPASPNVSRAMVTKQGRRFL*CRPRSL Trigger: CAAGCTTCGAGGTCTGCACCACAGAAACCTCCTTCC...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAACACAGGAAAGCTGACTaGGATGTGAACTCAGACCTG | + |
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Preference number: 2 (lower is better) Translates to: CELRPASPNVSRAMVTKQHRKAD*DVNSDL Trigger: CAGGTCTGAGTTCACATCTCAGTCAGCTTTCCTGTG...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTGCTGCATTAGAATCATaGCTTCAGAGTCGACTTTGC | + |
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Preference number: 2 (lower is better) Translates to: LRPASPNVSRAMVTKQAIAALES*LQSRLC Trigger: GCAAAGTCGACTCTGAAGTCATGATTCTAATGCAGC...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR GCA 90 bp | AATAGGAAGGAGGTTTCTGTGGTGCAGACCTCGAAGCTTGCAGCTCTCGGTGAGTACAAGAAATATCACTaGACAGCAAACCCCTACACT | + |
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Preference number: 2 (lower is better) Translates to: NRKEVSVVQTSKLAALGEYKKYH*TANPYT Trigger: AGTGTAGGGGTTTGCTGTGCAGTGATATTTCTTGTA...CTCACCGAGAGCTGCAAGCTTCGAGGTCTGCACCACAGAAACCTCCTTCCTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTCCAAAAGTACCTTCTTaGAGGACATCTTTCAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: LRPASPNVSRAMVTKQAIPKVPS*RTSFSV Trigger: CACACTGAAAGATGTCCTCCAAGAAGGTACTTTTGG...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGGACATCTTTCAGTGTaGTCCTTTCTCTGGATATTG | + |
|
Preference number: 2 (lower is better) Translates to: CELRPASPNVSRAMVTKQGHLSV*SFLWIL Trigger: CAATATCCAGAGAAAGGATCACACTGAAAGATGTCC...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | ACACGACCAACAGTCACACACTGTGAGCAGTATTTTGAATACCAGCATATAAAACTGCTTCCCCAAATGTaGGCAGAGCCATGGTCACTA | + |
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Preference number: 2 (lower is better) Translates to: TRPTVTHCEQYFEYQHIKLLPQM*AEPWSL Trigger: TAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAG...TTTTATATGCTGGTATTCAAAATACTGCTCACAGTGTGTGACTGTTGGTCGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTGTTTTTGTCCAAGGCTaGAGTTTTTACTTCTTCAAG | + |
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Preference number: 2 (lower is better) Translates to: LRPASPNVSRAMVTKQAIVFVQG*SFYFFK Trigger: CTTGAAGAAGTAAAAACTTCAGCCTTGGACAAAAAC...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR CAA 90 bp | AATCCCTTAGGTAGACCAAACCTGTGTGTAACTACATACATGTATTaGTGGACTCTCTCCATGATAAGTCCTTGTAGGAGTAACTCCAAC | + |
|
Preference number: 2 (lower is better) Translates to: NPLGRPNLCVTTYMY*WTLSMISPCRSNSN Trigger: GTTGGAGTTACTCCTACAAGGACTTATCATGGAGAGAGTCCACAAATACATGTATGTAGTTACACACAGGTTTGGTCTACCTAAGGGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR TCA 90 bp | ACACGACCAACAGTCACACACTGTGAGCAGTATTTTGAATACCAGCATATAAAATCTGTGATCTTGACTTaGAGAGTGTCGTCGATGACA | + |
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Preference number: 2 (lower is better) Translates to: TRPTVTHCEQYFEYQHIKSVILT*RVSSMT Trigger: TGTCATCGACGACACTCTTCAAGTCAAGATCACAGA...TTTTATATGCTGGTATTCAAAATACTGCTCACAGTGTGTGACTGTTGGTCGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR GCA 72 bp | CTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTaGGCTGCACGAGGGGCATCCGTGACAGACAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: LGDLETVCPCRH*AARGASVTDRH Trigger: GTGCCTGTCTGTCACGGATGCCCCTCGTGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 ENSMUST00000176198.8 |
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| 3UTR TCA 72 bp | GCCTTCTTCCAGCTCACAGGAAAGCTGACTGAGATGTaGACTCAGACCTGCTTCCCCAAATGTGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: AFFQLTGKLTEM*TQTCFPKCEQS Trigger: GCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACATCTCAGTCAGCTTTCCTGTGAGCTGGAAGAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR TCA 72 bp | TTTAATAGAACAGACCCATGTTCTCCCTCACATCCCTaGGAGGACAGACACAGAGGCAGTAGCTGCAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: FNRTDPCSPSHP*EDRHRGSSCRP Trigger: GGGCCTGCAGCTACTGCCTCTGTGTCTGTCCTCTCAGGGATGTGAGGGAGAACATGGGTCTGTTCTATTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CAA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGGTGATAGGCGTTGCATaGTTGGGTGTGTCAGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: ELRPASPNVSRAMVTKQAVIGVA*LGVSAL Trigger: GAGAGCTGACACACCCAACAATGCAACGCCTATCAC...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR TCA 72 bp | AGGAGTAACTCCAACTTCTTAACAGGCCCTGGCGGCTaGGCAGAGTCAGCTGTTCTTCTGTTAGGGTTTTGG | + |
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Preference number: 3 (lower is better) Translates to: RSNSNFLTGPGG*AESAVLLLGFW Trigger: CCAAAACCCTAACAGAAGAACAGCTGACTCTGCTCAGCCGCCAGGGCCTGTTAAGAAGTTGGAGTTACTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR CCA 72 bp | CCCTACACTGATGTAAAACACACGCGTGGAAGTCGTTaGCGCTGCATGGACAGGGTCATAAATAGTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: PYTDVKHTRGSR*RCMDRVINSSA Trigger: AGCAGAACTATTTATGACCCTGTCCATGCAGCGCCAACGACTTCCACGCGTGTGTTTTACATCAGTGTAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CAA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAACCCATAGCCACAAAGTaGTCTACTTGGAATCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: CELRPASPNVSRAMVTKQPIATK*STWNPS Trigger: GCTGGGATTCCAAGTAGACAACTTTGTGGCTATGGG...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTGAAAAGTACCGCATTTaGAAGACAAACCACTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: LRPASPNVSRAMVTKQAIEKYRI*KTNHSQ Trigger: TTGGGAGTGGTTTGTCTTCAAAATGCGGTACTTTTC...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| 3UTR GCA 72 bp | ACTGATGTAAAACACACGCGTGGAAGTCGTTGGCGCTaGATGGACAGGGTCATAAATAGTTCTGCTAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: TDVKHTRGSRWR*MDRVINSSASV Trigger: AACACTAGCAGAACTATTTATGACCCTGTCCATGCAGCGCCAACGACTTCCACGCGTGTGTTTTACATCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR TCA 72 bp | GAAAACACTCTGCGTTATTACGTCATCGTTAAAAGCTaGGGTTTGGAAGCACTGCTAAGGCTGGGTGATCTG | + |
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Preference number: 3 (lower is better) Translates to: ENTLRYYVIVKS*GLEALLRLGDL Trigger: CAGATCACCCAGCCTTAGCAGTGCTTCCAAACCTCAGCTTTTAACGATGACGTAATAACGCAGAGTGTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 ENSMUST00000176198.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTTTATTCACAAGACTTATTTTAATAGAACAGACCCATGTTCTCCCTCACATGATCTTGCTGGGAAATaGCCTGTGGATTATTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: LFIHKTYFNRTDPCSPSHDLAGK*PVDYWL Trigger: AAGCCAATAATCCACAGGCAATTTCCCAGCAAGATC...ATGTGAGGGAGAACATGGGTCTGTTCTATTAAAATAAGTCTTGTGAATAAAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTTTATTCACAAGACTTATTTTAATAGAACAGACCCATGTTCTCCCTCACATGAAAAGTACCGCATTTaGAAGACAAACCACTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: LFIHKTYFNRTDPCSPSHEKYRI*KTNHSQ Trigger: TTGGGAGTGGTTTGTCTTCAAAATGCGGTACTTTTC...ATGTGAGGGAGAACATGGGTCTGTTCTATTAAAATAAGTCTTGTGAATAAAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
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| CDS-3UTR CCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGGTAGAGGCTCACGCTaGGTCCCGCAGGAGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCGRGSR*VPQERR Trigger: CCGCCGCTCCTGCGGGACCCAGCGTGAGCCTCTACC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 ENSMUST00000176198.8 |
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| CDS-3UTR CCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGCTCCCAGGGCAGCGTaGAACTCTGTGAGGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAAPRAA*NSVRHW Trigger: CCAGTGCCTCACAGAGTTCCACGCTGCCCTGGGAGC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
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| CDS-3UTR CCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTCCCAGGGCAGCGTaGAACTCTGTGAGGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCAPRAA*NSVRHW Trigger: CCAGTGCCTCACAGAGTTCCACGCTGCCCTGGGAGC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
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| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCCAGCGTGGAACTCTGTaGGGCACTGGACCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCQRGTL*GTGPAA Trigger: AGCAGCTGGTCCAGTGCCTCACAGAGTTCCACGCTG...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
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| CDS-3UTR CCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGCAGCCAGGTCTCTATaGATCACTTCTCTCCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAAARSL*ITSLLA Trigger: GGCGAGGAGAGAAGTGATCCATAGAGACCTGGCTGC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
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| CDS-3UTR GCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGAAACACTGATAAAGTaGGTGGGACCTCCCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAETLIK*VGPPLE Trigger: CTCAAGGGGAGGTCCCACGCACTTTATCAGTGTTTC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
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| CDS-3UTR CCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCAGCCAGGTCTCTATaGATCACTTCTCTCCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCAARSL*ITSLLA Trigger: GGCGAGGAGAGAAGTGATCCATAGAGACCTGGCTGC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
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| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCCAAGGTAGGATAACCTaGGGAGCTGGTGATAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCQGRIT*GAGDRR Trigger: ACGCCTATCACCAGCTCCTCAGGTTATCCTACCTTG...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175883.8 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCAGAAACACTGATAAAGTaGGTGGGACCTCCCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAAETLIK*VGPPLE Trigger: CTCAAGGGGAGGTCCCACGCACTTTATCAGTGTTTC...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
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| CDS-3UTR CCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGGTAGAGGCTCACGCTaGGTCCCGCAGGAGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: CELRPASPNVSRAMVTKQGRGSR*VPQERR Trigger: CCGCCGCTCCTGCGGGACCCAGCGTGAGCCTCTACC...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000176198.8 |
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| CDS-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGCTGCATTAGAATCATaGCTTCAGAGTCGACTTTGC | + |
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Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAAALES*LQSRLC Trigger: GCAAAGTCGACTCTGAAGTCATGATTCTAATGCAGC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
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| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCAGCAAACCCCTACACTaGTGTAAAACACACGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCSKPLH*CKTHAW Trigger: CCACGCGTGTGTTTTACATCAGTGTAGGGGTTTGCT...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCACCCCCAATTCATGTATaGCAATACCACCATGGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAAPPIHV*QYHHGL Trigger: AAGCCCATGGTGGTATTGCCATACATGAATTGGGGG...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGGACATCTTTCAGTGTaGTCCTTTCTCTGGATATTG | + |
|
Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAGHLSV*SFLWIL Trigger: CAATATCCAGAGAAAGGATCACACTGAAAGATGTCC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR TCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCATCTGTGATCTTGACTTaGAGAGTGTCGTCGATGACA | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAASVILT*RVSSMT Trigger: TGTCATCGACGACACTCTTCAAGTCAAGATCACAGA...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGCCAAAAGTACCTTCTTaGAGGACATCTTTCAGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAPKVPS*RTSFSV Trigger: CACACTGAAAGATGTCCTCCAAGAAGGTACTTTTGG...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCATTAGAATCATaGCTTCAGAGTCGACTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCAALES*LQSRLC Trigger: GCAAAGTCGACTCTGAAGTCATGATTCTAATGCAGC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCAGGACATCTTTCAGTGTaGTCCTTTCTCTGGATATTG | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAAGHLSV*SFLWIL Trigger: CAATATCCAGAGAAAGGATCACACTGAAAGATGTCC...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGTCTTCTATGCACACATaGGTAATAGGAAGGAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: PQTHNNRSTGSVRSSAQASSMHT*VIGRRF Trigger: AAACCTCCTTCCTATTACTCATGTGTGCATAGAAGA...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCTCTGTGATCTTGACTTaGAGAGTGTCGTCGATGACA | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCSVILT*RVSSMT Trigger: TGTCATCGACGACACTCTTCAAGTCAAGATCACAGA...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTCAGCGTGGAACTCTGTaGGGCACTGGACCAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: LRPASPNVSRAMVTKQAIQRGTL*GTGPAA Trigger: AGCAGCTGGTCCAGTGCCTCACAGAGTTCCACGCTG...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR CCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCAATGGCAATACCACCATaGGCTTTTCTCCTTCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAAMAIPP*AFLLLL Trigger: TAGAAGAAGGAGAAAAGCCCATGGTGGTATTGCCAT...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | TGTGAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGTCTGGGTAGACGGCTaGGACAGCCCCTGGGAACTA | + |
|
Preference number: 4 (lower is better) Translates to: CELRPASPNVSRAMVTKQVWVDG*DSPWEL Trigger: TAGTTCCCAGGGGCTGTCTCAGCCGTCTACCCAGAC...TTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR TCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCATCTTCTATGCACACATaGGTAATAGGAAGGAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAASSMHT*VIGRRF Trigger: AAACCTCCTTCCTATTACTCATGTGTGCATAGAAGA...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR GCA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCATACAAGAAATATCACTaGACAGCAAACCCCTACACT | + |
|
Preference number: 4 (lower is better) Translates to: LLRLGDLETVCPCRHCAAYKKYH*TANPYT Trigger: AGTGTAGGGGTTTGCTGTGCAGTGATATTTCTTGTA...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR GCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCATCTTGCTGGGAAATTaGCTGTGGATTATTGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCILLGN*LWIIGF Trigger: GAAGCCAATAATCCACAGGCAATTTCCCAGCAAGAT...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCCCAAAAGTACCTTCTTaGAGGACATCTTTCAGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCPKVPS*RTSFSV Trigger: CACACTGAAAGATGTCCTCCAAGAAGGTACTTTTGG...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR GCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCTACAAGAAATATCACTaGACAGCAAACCCCTACACT | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCYKKYH*TANPYT Trigger: AGTGTAGGGGTTTGCTGTGCAGTGATATTTCTTGTA...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR TCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGTTTTTGTCCAAGGCTaGAGTTTTTACTTCTTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCVFVQG*SFYFFK Trigger: CTTGAAGAAGTAAAAACTTCAGCCTTGGACAAAAAC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR GCA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCTGGCTTCTACTAATTTaGACTGCCGAAGAAATAATT | + |
|
Preference number: 4 (lower is better) Translates to: EALLRLGDLETVCPCRHCWLLLI*TAEEII Trigger: AATTATTTCTTCGGCAGTGCAAATTAGTAGAAGCCA...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CCA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATGGCAATACCACCATaGGCTTTTCTCCTTCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: ELRPASPNVSRAMVTKQAMAIPP*AFLLLL Trigger: TAGAAGAAGGAGAAAAGCCCATGGTGGTATTGCCAT...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR GCA 90 bp | CTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGATTATCTTGCTGGGAAATTaGCTGTGGATTATTGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LRPASPNVSRAMVTKQAIILLGN*LWIIGF Trigger: GAAGCCAATAATCCACAGGCAATTTCCCAGCAAGAT...AATCGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| 3UTR CAA 72 bp | CGGCTGAGCAGAGTCAGCTGTTCTTCTGTTAGGGTTTaGGAACCTGAGTCAAACTCTCAGGGGATAAAATGT | + |
|
Preference number: 4 (lower is better) Translates to: RLSRVSCSSVRV*EPESNSQGIKC Trigger: ACATTTTATCCCCTGAGAGTTTGACTCAGGTTCCAAAACCCTAACAGAAGAACAGCTGACTCTGCTCAGCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
||
| 3UTR CAA 72 bp | GGTAGACCAAACCTGTGTGTAACTACATACATGTATTaGTGGACTCTCTCCATGATAAGTCCTTGTAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: GRPNLCVTTYMY*WTLSMISPCRS Trigger: ACTCCTACAAGGACTTATCATGGAGAGAGTCCACAAATACATGTATGTAGTTACACACAGGTTTGGTCTACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176198.8 |
||
| CDS-3UTR CAA 90 bp | CCCCAAACCCACAACAACAGAAGCACCGGCTCTGTGCGTAGCTCCGCCCAGGCGGTGATAGGCGTTGCATaGTTGGGTGTGTCAGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PQTHNNRSTGSVRSSAQAVIGVA*LGVSAL Trigger: GAGAGCTGACACACCCAACAATGCAACGCCTATCAC...CGCCTGGGCGGAGCTACGCACAGAGCCGGTGCTTCTGTTGTTGTGGGTTTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCACCCATAGCCACAAAGTaGTCTACTTGGAATCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LLRLGDLETVCPCRHCAAPIATK*STWNPS Trigger: GCTGGGATTCCAAGTAGACAACTTTGTGGCTATGGG...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCAATAGGCGTTGCATTGTaGGGTGTGTCAGCTCTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LLRLGDLETVCPCRHCAAIGVAL*GVSALR Trigger: TCTGAGAGCTGACACACCCAACAATGCAACGCCTAT...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGTGATAGGCGTTGCATaGTTGGGTGTGTCAGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: EALLRLGDLETVCPCRHCVIGVA*LGVSAL Trigger: GAGAGCTGACACACCCAACAATGCAACGCCTATCAC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCCCCATAGCCACAAAGTaGTCTACTTGGAATCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: EALLRLGDLETVCPCRHCPIATK*STWNPS Trigger: GCTGGGATTCCAAGTAGACAACTTTGTGGCTATGGG...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCACCCAAAAGTACCTTCTaGGAGGACATCTTTCAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: LLRLGDLETVCPCRHCAAPKSTF*EDIFQC Trigger: ACACTGAAAGATGTCCTCCAAGAAGGTACTTTTGGG...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCAGATCTTGCTGGGAAATaGCCTGTGGATTATTGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LLRLGDLETVCPCRHCAADLAGK*PVDYWL Trigger: AAGCCAATAATCCACAGGCAATTTCCCAGCAAGATC...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGATCTTGCTGGGAAATaGCCTGTGGATTATTGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: EALLRLGDLETVCPCRHCDLAGK*PVDYWL Trigger: AAGCCAATAATCCACAGGCAATTTCCCAGCAAGATC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGTTCTGCTAGTGTTTTaGTCCAAGGCTGAAGTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: EALLRLGDLETVCPCRHCVLLVF*SKAEVF Trigger: AAAAACTTCAGCCTTGGACAAAAACACTAGCAGAAC...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCGCTGCACTGAACTTCAGATGCTaGGTCTTTAACTGTTTTTAC | + |
|
Preference number: 5 (lower is better) Translates to: LLRLGDLETVCPCRHCAALNFRC*VFNCFY Trigger: GTAAAAACAGTTAAAGACCAAGCATCTGAAGTTCAG...TGCAGCGCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAAGCACTGCTAAGGCTGGGTGATCTGGAGACAGTGTGCCCCTGCAGGCACTGCTTGGCTTCTACTAATTaGCACTGCCGAAGAAATAAT | + |
|
Preference number: 5 (lower is better) Translates to: EALLRLGDLETVCPCRHCLASTN*HCRRNN Trigger: ATTATTTCTTCGGCAGTGCAAATTAGTAGAAGCCAA...GCAGTGCCTGCAGGGGCACACTGTCTCCAGATCACCCAGCCTTAGCAGTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035142.8 ENSMUST00000175883.8 |
||
| CDS-3UTR CAA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGGTTCTGCTAGTGTTTTaGTCCAAGGCTGAAGTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: ELRPASPNVSRAMVTKQAVLLVF*SKAEVF Trigger: AAAAACTTCAGCCTTGGACAAAAACACTAGCAGAAC...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR CAA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGCTGAACTTCAGATGCTaGGTCTTTAACTGTTTTTAC | + |
|
Preference number: 5 (lower is better) Translates to: ELRPASPNVSRAMVTKQALNFRC*VFNCFY Trigger: GTAAAAACAGTTAAAGACCAAGCATCTGAAGTTCAG...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
||
| CDS-3UTR CAA 90 bp | GAACTCAGACCTGCTTCCCCAAATGTGAGCAGAGCCATGGTCACTAAACAAGCGTTGGCTTCTACTAATTaGCACTGCCGAAGAAATAAT | + |
|
Preference number: 5 (lower is better) Translates to: ELRPASPNVSRAMVTKQALASTN*HCRRNN Trigger: ATTATTTCTTCGGCAGTGCAAATTAGTAGAAGCCAA...CGCTTGTTTAGTGACCATGGCTCTGCTCACATTTGGGGAAGCAGGTCTGAGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035142.8 |
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