Pregenerated sensors for RWDD4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031568Ensembl transcript IDs: ENSMUST00000033973.14, ENSMUST00000175692.8, ENSMUST00000176379.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTAAAAATGATCACATCGCTTGGCCCAGATGGTTAAGTTACCACTaGCTTCCCTCTGTGGAGCCATCCACCGGCCATGATGCTCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: FKNDHIAWPRWLSYH*LPSVEPSTGHDAQE Trigger: CTCCTGAGCATCATGGCCGGTGGATGGCTCCACAGAGGGAAGTCAGTGGTAACTTAACCATCTGGGCCAAGCGATGTGATCATTTTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR TCA 90 bp | AGGCCAGAGATTTATGTTCTACATCTTCCTCTATTGCTCTCTACCTaGACCAGGTGCTCAGTGACTCAGCCAGACTGTCAGGGCAGCAAG | + |
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Preference number: 1 (lower is better) Translates to: RPEIYVLHLPLLLST*TRCSVTQPDCQGSK Trigger: CTTGCTGCCCTGACAGTCTGGCTGAGTCACTGAGCACCTGGTTCAGGTAGAGAGCAATAGAGGAAGATGTAGAACATAAATCTCTGGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR GCA 90 bp | CATGCAAGTGTACCTGGTATTTGTATGTGTGTGCAAACGGGTGTATaGACATGTGCTTGCCTGTTGAGGCCAGAGATTTATGTTCTACAT | + |
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Preference number: 1 (lower is better) Translates to: HASVPGICMCVQTGV*TCACLLRPEIYVLH Trigger: ATGTAGAACATAAATCTCTGGCCTCAACAGGCAAGCACATGTGCATACACCCGTTTGCACACACATACAAATACCAGGTACACTTGCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR GCA 90 bp | TTGGCAAATTTGTTGTTTTTGTTTTGTTCGGTGTACGGTCATGCATaGAAGTGTACCTGGTATTTGTATGTGTGTGCAAACGGGTGTATG | + |
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Preference number: 1 (lower is better) Translates to: LANLLFLFCSVYGHA*KCTWYLYVCANGCM Trigger: CATACACCCGTTTGCACACACATACAAATACCAGGTACACTTGCATGCATGACCGTACACCGAACAAAACAAAAACAACAAATTTGCCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR GCA 90 bp | GTATTTGGCAAATTTGTTGTTTTTGTTTTGTTCGGTGTACGGTCATaGATGCAAGTGTACCTGGTATTTGTATGTGTGTGCAAACGGGTG | + |
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Preference number: 1 (lower is better) Translates to: VFGKFVVFVLFGVRS*MQVYLVFVCVCKRV Trigger: CACCCGTTTGCACACACATACAAATACCAGGTACACTTGCATGCATGACCGTACACCGAACAAAACAAAAACAACAAATTTGCCAAATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR-3UTR TCA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTGCCATCCACCGGCCATaGTGCTCAGGAGCTTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: GRSRNARDSALGSSELRVAIHRP*CSGASE Trigger: TTCTGAAGCTCCTGAGCATCATGGCCGGTGGATGGC...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR GCA 90 bp | TCATCATTACGGGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGGGGTCGTTCGAGGAATaGCAGAGACTCAGCACTGGG | + |
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Preference number: 2 (lower is better) Translates to: SSLRVVRGMPETQHWALLGSFEE*QRLSTG Trigger: CCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCC...CAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCCGTAATGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTGGGTCGTTCGAGGAATaGCAGAGACTCAGCACTGGG | + |
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Preference number: 2 (lower is better) Translates to: GRSRNARDSALGSSELRVGSFEE*QRLSTG Trigger: CCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCC...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | GGAGAGATGCTGAACCAGGCCGCTTTTCAAAGGCTGCTCTTGCTTGGGCGGCAGGAGTTTCAACCGAGATaGTATTGGCTACAGGCGTTG | + |
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Preference number: 2 (lower is better) Translates to: GEMLNQAAFQRLLLLGRQEFQPR*YWLQAL Trigger: CAACGCCTGTAGCCAATATCATCTCGGTTGAAACTC...CTGCCGCCCAAGCAAGAGCAGCCTTTGAAAAGCGGCCTGGTTCAGCATCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR GCA 90 bp | TCATCATTACGGGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGATTGGCTACAGGCGTTaGAGAATTCCCAGGATGGTG | + |
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Preference number: 2 (lower is better) Translates to: SSLRVVRGMPETQHWALLIGYRR*RIPRMV Trigger: CACCATCCTGGGAATTCTGCAACGCCTGTAGCCAAT...CAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCCGTAATGATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTAGTAAGGAGAGATGCTaGACCAGGCCGCTTTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: GRSRNARDSALGSSELRVSKERC*TRPLFK Trigger: TTTGAAAAGCGGCCTGGTTCAGCATCTCTCCTTACT...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | GGAGTTTCAACCGAGATGATATTGGCTACAGGCGTTGCAGAATTCCCAGGATGGAGTAAGGAGAGATGCTaGACCAGGCCGCTTTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: GVSTEMILATGVAEFPGWSKERC*TRPLFK Trigger: TTTGAAAAGCGGCCTGGTTCAGCATCTCTCCTTACT...CCATCCTGGGAATTCTGCAACGCCTGTAGCCAATATCATCTCGGTTGAAACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | ACACATACACACACCCCAATACCTCTCCTAATAAAACTACAGCAAGTTTCCTTTGCCATCCACCGGCCATaGTGCTCAGGAGCTTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: THTHTPIPLLIKLQQVSFAIHRP*CSGASE Trigger: TTCTGAAGCTCCTGAGCATCATGGCCGGTGGATGGC...AAAGGAAACTTGCTGTAGTTTTATTAGGAGAGGTATTGGGGTGTGTGTATGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR-3UTR CCA 90 bp | CTTTTCAAAGGCTGCTCTTGCTTGGGCGGCAGGTGCTTGCTACTCATCATCTTTAATGATCACATCGCTTaGCCCAGATGGTTAAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: LFKGCSCLGGRCLLLIIFNDHIA*PRWLSY Trigger: GTAACTTAACCATCTGGGCCAAGCGATGTGATCATT...AAAGATGATGAGTAGCAAGCACCTGCCGCCCAAGCAAGAGCAGCCTTTGAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTCAAACACGGCTTTGTTaGCCTTTAAAAATGATCACA | + |
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Preference number: 2 (lower is better) Translates to: GRSRNARDSALGSSELRVQTRLC*PLKMIT Trigger: TGTGATCATTTTTAAAGGCCAACAAAGCCGTGTTTG...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR CCA 90 bp | TCATCATTACGGGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGCAAACACGGCTTTGTTaGCCTTTAAAAATGATCACA | + |
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Preference number: 2 (lower is better) Translates to: SSLRVVRGMPETQHWALLQTRLC*PLKMIT Trigger: TGTGATCATTTTTAAAGGCCAACAAAGCCGTGTTTG...CAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCCGTAATGATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGAGGAACTACACAGAGAATCATATAAAGCCCAACTCCAGTACTCAGATAGGCAGCTCCCCTTTGTaGTCTGTTTTATCTGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: MKRNYTENHIKPNSSTQIGSSPL*SVLSAS Trigger: GCTGGCAGATAAAACAGATCACAAAGGGGAGCTGCC...TATCTGAGTACTGGAGTTGGGCTTTATATGATTCTCTGTGTAGTTCCTCTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGAGGAACTACACAGAGAATCATATAAAGCCCAACTCCAGTACTCAGATAAGCACTGGGCTCTTCTaGACTGAGAGTTCAAACACG | + |
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Preference number: 2 (lower is better) Translates to: MKRNYTENHIKPNSSTQISTGLF*TESSNT Trigger: CGTGTTTGAACTCTCAGTTCAGAAGAGCCCAGTGCT...TATCTGAGTACTGGAGTTGGGCTTTATATGATTCTCTGTGTAGTTCCTCTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR CCA 90 bp | TTAACGCCGACTCCCCTGAAAGACCTATTACCAAACAACAACAAAACATCACGAAATGATCACATCGCTTaGCCCAGATGGTTAAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: LTPTPLKDLLPNNNKTSRNDHIA*PRWLSY Trigger: GTAACTTAACCATCTGGGCCAAGCGATGTGATCATT...TCGTGATGTTTTGTTGTTGTTTGGTAATAGGTCTTTCAGGGGAGTCGGCGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR CAA 90 bp | TTCAAATGCTTTTCTAACGTATTTGGCAAATTTGTTGTTTTTGTTTaGTTCGGTGTACGGTCATGCATGCAAGTGTACCTGGTATTTGTA | + |
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Preference number: 2 (lower is better) Translates to: FKCFSNVFGKFVVFV*FGVRSCMQVYLVFV Trigger: TACAAATACCAGGTACACTTGCATGCATGACCGTACACCGAACAAAACAAAAACAACAAATTTGCCAAATACGTTAGAAAAGCATTTGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR CCA 72 bp | GCGTCTCAGGTCATGCCCCGCTTTTTATGTGGCTGTTaGGGATCTGAACTCAGGACCTCAGGCTTGCACAGC | + |
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Preference number: 3 (lower is better) Translates to: ASQVMPRFLCGC*GSELRTSGLHS Trigger: GCTGTGCAAGCCTGAGGTCCTGAGTTCAGATCCCCAACAGCCACATAAAAAGCGGGGCATGACCTGAGACGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR-3UTR CAA 90 bp | TCATCATTACGGGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGTTTCAAAGGCTGCTCTaGCTTGGGCGGCAGGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: SSLRVVRGMPETQHWALLFQRLL*LGRQVL Trigger: AAGCACCTGCCGCCCAAGCAAGAGCAGCCTTTGAAA...CAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCCGTAATGATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR CCA 72 bp | GCTGAACCAGGCCGCTTTTCAAAGGCTGCTCTTGCTTaGGCGGCAGGTGCTTGCTACTCATCATCTTTAGAG | + |
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Preference number: 3 (lower is better) Translates to: AEPGRFSKAALA*AAGACYSSSLE Trigger: CTCTAAAGATGATGAGTAGCAAGCACCTGCCGCCCAAGCAAGAGCAGCCTTTGAAAAGCGGCCTGGTTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR-3UTR CAA 90 bp | ATTATTCACATAACTGAAAGCATTCATGATCACACACCGGCATCCAGTCCGAGATTTCAAAGGCTGCTCTaGCTTGGGCGGCAGGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: IIHITESIHDHTPASSPRFQRLL*LGRQVL Trigger: AAGCACCTGCCGCCCAAGCAAGAGCAGCCTTTGAAA...TCTCGGACTGGATGCCGGTGTGTGATCATGAATGCTTTCAGTTATGTGAATAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR-3UTR CAA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTTCAAACACGGCTTTGTaGGCCTTTAAAAATGATCAC | + |
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Preference number: 3 (lower is better) Translates to: GRSRNARDSALGSSELRVSNTAL*AFKNDH Trigger: GTGATCATTTTTAAAGGCCAACAAAGCCGTGTTTGA...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR CAA 90 bp | GGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGAACTGAGAGTTTCATTGACTTTCCACTaGTGTGTTTTTCAAGACACT | + |
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Preference number: 3 (lower is better) Translates to: GRSRNARDSALGSSELRVSLTFH*CVFQDT Trigger: AGTGTCTTGAAAAACACACAAGTGGAAAGTCAATGA...AACTCTCAGTTCAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR CCA 72 bp | GGCTCTTCTGAACTGAGAGTTCAAACACGGCTTTGTTaGCCTTTAAAAATGATCACATCGCTTGGCCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: GSSELRVQTRLC*PLKMITSLGPD Trigger: ATCTGGGCCAAGCGATGTGATCATTTTTAAAGGCCAACAAAGCCGTGTTTGAACTCTCAGTTCAGAAGAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR-3UTR CAA 90 bp | ATTATTCACATAACTGAAAGCATTCATGATCACACACCGGCATCCAGTCCGAGATCATTGACTTTCCACTaGTGTGTTTTTCAAGACACT | + |
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Preference number: 3 (lower is better) Translates to: IIHITESIHDHTPASSPRSLTFH*CVFQDT Trigger: AGTGTCTTGAAAAACACACAAGTGGAAAGTCAATGA...TCTCGGACTGGATGCCGGTGTGTGATCATGAATGCTTTCAGTTATGTGAATAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR TCA 72 bp | CATCTAGAAAACGAGACAAAAGCAAACTCTTCACTGTaGCTACACTTACTTTACAGCTCACACAGTTTAACC | + |
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Preference number: 3 (lower is better) Translates to: HLENETKANSSL*LHLLYSSHSLT Trigger: GGTTAAACTGTGTGAGCTGTAAAGTAAGTGTAGTCACAGTGAAGAGTTTGCTTTTGTCTCGTTTTCTAGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR GCA 72 bp | AAATTTGTTGTTTTTGTTTTGTTCGGTGTACGGTCATaGATGCAAGTGTACCTGGTATTTGTATGTGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: KFVVFVLFGVRS*MQVYLVFVCVC Trigger: GCACACACATACAAATACCAGGTACACTTGCATGCATGACCGTACACCGAACAAAACAAAAACAACAAATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| CDS-3UTR GCA 90 bp | GGAGAGATGCTGAACCAGGCCGCTTTTCAAAGGCTGCTCTTGCTTGGGCGGCAGATTGGCTACAGGCGTTaGAGAATTCCCAGGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: GEMLNQAAFQRLLLLGRQIGYRR*RIPRMV Trigger: CACCATCCTGGGAATTCTGCAACGCCTGTAGCCAAT...CTGCCGCCCAAGCAAGAGCAGCCTTTGAAAAGCGGCCTGGTTCAGCATCTCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR CAA 72 bp | GAGATGCTGAACCAGGCCGCTTTTCAAAGGCTGCTCTaGCTTGGGCGGCAGGTGCTTGCTACTCATCATCTT | + |
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Preference number: 4 (lower is better) Translates to: EMLNQAAFQRLL*LGRQVLATHHL Trigger: AAGATGATGAGTAGCAAGCACCTGCCGCCCAAGCAAGAGCAGCCTTTGAAAAGCGGCCTGGTTCAGCATCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175692.8 |
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| 3UTR CAA 72 bp | TGTGGCTGTTGGGGATCTGAACTCAGGACCTCAGGCTaGCACAGCAAACCTTTACTGACTGAGCCACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: CGCWGSELRTSG*HSKPLLTEPLL Trigger: GAGAAGTGGCTCAGTCAGTAAAGGTTTGCTGTGCAAGCCTGAGGTCCTGAGTTCAGATCCCCAACAGCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| CDS-3UTR TCA 90 bp | TCATCATTACGGGTCGTTCGAGGAATGCCAGAGACTCAGCACTGGGCTCTTCTGGAGTTTCAACCGAGATaGTATTGGCTACAGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: SSLRVVRGMPETQHWALLEFQPR*YWLQAL Trigger: CAACGCCTGTAGCCAATATCATCTCGGTTGAAACTC...CAGAAGAGCCCAGTGCTGAGTCTCTGGCATTCCTCGAACGACCCGTAATGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| CDS-3UTR TCA 90 bp | GAAAATGAAGAGGAACTACACAGAGAATCATATAAAGCCCAACTCCAGTACTCAGGCAGCTCCCCTTTGTaGTCTGTTTTATCTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ENEEELHRESYKAQLQYSGSSPL*SVLSAS Trigger: GCTGGCAGATAAAACAGATCACAAAGGGGAGCTGCC...TGAGTACTGGAGTTGGGCTTTATATGATTCTCTGTGTAGTTCCTCTTCATTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| 3UTR CAA 72 bp | ATTTACTACAGCCAAACCTCGTCATTGACTTTCCACTaGTGTGTTTTTCAAGACACTCACAAAAGAACATGT | + |
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Preference number: 4 (lower is better) Translates to: IYYSQTSSLTFH*CVFQDTHKRTC Trigger: ACATGTTCTTTTGTGAGTGTCTTGAAAAACACACAAGTGGAAAGTCAATGACGAGGTTTGGCTGTAGTAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000175692.8 |
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| 3UTR CAA 72 bp | TTTTCTAACGTATTTGGCAAATTTGTTGTTTTTGTTTaGTTCGGTGTACGGTCATGCATGCAAGTGTACCTG | + |
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Preference number: 4 (lower is better) Translates to: FSNVFGKFVVFV*FGVRSCMQVYL Trigger: CAGGTACACTTGCATGCATGACCGTACACCGAACAAAACAAAAACAACAAATTTGCCAAATACGTTAGAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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| CDS CCA 90 bp | TCTGCGGGTATGTCTCCGTCCAGGAAACCTCTATCAGGAAGGCTTTaGGATCGCCGTCTTCACCTATCCTATATTGAAATGACACTGGAC | + |
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Preference number: 5 (lower is better) Translates to: SAGMSPSRKPLSGRL*DRRLHLSYIEMTLD Trigger: GTCCAGTGTCATTTCAATATAGGATAGGTGAAGACGGCGATCCCAAAGCCTTCCTGATAGAGGTTTCCTGGACGGAGACATACCCGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033973.14 ENSMUST00000176379.2 |
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| CDS-3UTR CAA 90 bp | TTAACGCCGACTCCCCTGAAAGACCTATTACCAAACAACAACAAAACATCACGATCTATCAGGAAGGCTTaGGGATCGCCGTCTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: LTPTPLKDLLPNNNKTSRSIRKA*GSPSSP Trigger: AGGTGAAGACGGCGATCCCAAAGCCTTCCTGATAGA...TCGTGATGTTTTGTTGTTGTTTGGTAATAGGTCTTTCAGGGGAGTCGGCGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033973.14 |
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