Pregenerated sensors for RWDD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028133Ensembl transcript IDs: ENSMUST00000039761.12, ENSMUST00000106466.10, ENSMUST00000106467.8, ENSMUST00000164573.8, ENSMUST00000164925.9, ENSMUST00000170781.2
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTGAGCTCCCCAAGTCCTaGAGCTCCGAATTCCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: KQQFLYCGGFLSPPDNPSELPKS*SSEFLL Trigger: CAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTC...AGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCCCCCAGTACACACTCTaGGAAGAGCTCCCCAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: IVSIKTTVPLLWWVSLSSPQYTL*EELPKS Trigger: GGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGG...GGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAAT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR CAA 90 bp | GCAGCTCCGAATTCCTTTTGTAACTCCTCCAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAACCTTTTGTGTTCCGTTTGTACTTTT | + |
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Preference number: 2 (lower is better) Translates to: AAPNSFCNSSSVEYS*TSNARNLLCSVCTF Trigger: AAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR-3UTR CCA 90 bp | CAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTTCTaGCAAACGTTAGAATATATG | + |
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Preference number: 2 (lower is better) Translates to: QQFLYCGGFLSPPDNPSIEPSLF*QTLEYM Trigger: CATATATTCTAACGTTTGCCAGAAAAGACTAGGTTC...AATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTCACATATGAATTTCGATTTGAACTCACTGTGTATTCTTCCAGCTCTCCAGAACCGCACCAAGAAATaGGTGTTAGATTTTTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: FSHMNFDLNSLCILPALQNRTKK*VLDFSQ Trigger: TTGAGAAAAATCTAACACTCATTTCTTGGTGCGGTT...CTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106466.10 |
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| 3UTR-3UTR CCA 90 bp | CAAATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCGAACCTAGTCTTTTCTaGCAAACGTTAGAATATATG | + |
|
Preference number: 2 (lower is better) Translates to: QIVSIKTTVPLLWWVSLSEPSLF*QTLEYM Trigger: CATATATTCTAACGTTTGCCAGAAAAGACTAGGTTC...GGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
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| 3UTR TCA 72 bp | TCATTCACCTCATTTCACCAGCCCCAGTACACACTCTaGGAAGAGCTCCCCAAGTCCTGCAGCTCCGAATTC | + |
|
Preference number: 3 (lower is better) Translates to: SFTSFHQPQYTL*EELPKSCSSEF Trigger: GAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGAGGTGAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR-3UTR CAA 90 bp | CACACTCTGAGAAGAGCTCCCCAAGTCCTGCAGCTCCGAATTCCTTTTGTAACTAACGCCAGAAACCTTTaGTGTTCCGTTTGTACTTTT | + |
|
Preference number: 3 (lower is better) Translates to: HTLRRAPQVLQLRIPFVTNARNL*CSVCTF Trigger: AAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTT...AGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: TVVGFSLLQTIRLLNLVFSVEYS*TSNARN Trigger: GTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACT...AAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| 3UTR CCA 72 bp | CAAATTGTCTCTATAAAAACAACAGTTCCTTTACTGTaGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTAT | + |
|
Preference number: 3 (lower is better) Translates to: QIVSIKTTVPLL*WVSLSSRQSVY Trigger: ATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
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| 3UTR TCA 72 bp | ATTCCTTTTGTAACTCCTCCAGTGTTGAATACTCTTTaGCTTCAAACGCCAGAAACCTTTTGTGTTCCGTTT | + |
|
Preference number: 3 (lower is better) Translates to: IPFVTPPVLNTL*LQTPETFCVPF Trigger: AAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CATTTCACCAGCCCCAGTACACACTCTGAGAAGAGCTCCCCAAGTCCTGCAGCTCTGGCGGTCTCCGGCTaGCTGAGGACAAGTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: HFTSPSTHSEKSSPSPAALAVSG*LRTSLR Trigger: TCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAG...AGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGGCTGGTGAAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | TCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGACCCCAGTACACACTCTaGGAAGAGCTCCCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: SDCSLMTTSMSPSPKAAGPQYTL*EELPKS Trigger: GGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGG...TCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039761.12 |
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| CDS-3UTR GCA 90 bp | ACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTTGCACTTCTCATGGCTaGTGGCGGTCTCCGGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: TVVGFSLLQTIRLLNLVFCTSHG*WRSPAG Trigger: GCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCA...AAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LSYDYFNEPIPQGSRKSKTSPTR*ARRRSR Trigger: CCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGT...TTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | TCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SFTVVGFSLLQTIRLLNLTSPTR*ARRRSR Trigger: CCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGT...TAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTCTGGCGGTCTCCGGCTaGCTGAGGACAAGTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QQFLYCGGFLSPPDNPSILAVSG*LRTSLR Trigger: TCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAG...AATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTGGCGGTCTCCGGCTaGCTGAGGACAAGTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LYCGGFLSPPDNPSIEPSLAVSG*LRTSLR Trigger: TCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAG...ACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR GCA 90 bp | AGAGAAATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGTGCACTTCTCATGGCTaGTGGCGGTCTCCGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: REISDCSLMTTSMSPSPKCTSHG*WRSPAG Trigger: GCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCA...CTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATTTCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CCCAGTACACACTCTGAGAAGAGCTCCCCAAGTCCTGCAGCTCCGAATTCCTTTAGTCTGAGATTCTGCTaGATCCAAAGAACCAGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: PSTHSEKSSPSPAAPNSFSLRFC*IQRTSS Trigger: CGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACT...AAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTAAAGTGCACTTCTCATaGCTGCTGGCGGTCTCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: LYCGGFLSPPDNPSIEPSKVHFS*LLAVSG Trigger: GCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTT...ACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | TCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGACCCCGTCGCACTTTCTaGCAAAGTGCACTTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: SDCSLMTTSMSPSPKAAGPRRTF*QSALLM Trigger: CATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGG...TCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | ACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTGTGAACCATCGGTTCTaGCACGAGCTTCCTGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TVVGFSLLQTIRLLNLVFVNHRF*HELPGF Trigger: GAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCAC...AAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | CAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGTGAACCATCGGTTCTaGCACGAGCTTCCTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: QQFLYCGGFLSPPDNPSIVNHRF*HELPGF Trigger: GAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCAC...AATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | AAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTGTGAACCATCGGTTCTaGCACGAGCTTCCTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: KQQFLYCGGFLSPPDNPSVNHRF*HELPGF Trigger: GAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCAC...AGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR GCA 90 bp | ATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCTGCACTTCTCATGGCTaGTGGCGGTCTCCGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: IVSIKTTVPLLWWVSLSSCTSHG*WRSPAG Trigger: GCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCA...GGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | TGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGG | + |
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Preference number: 4 (lower is better) Translates to: CLYKNNSSFTVVGFSLLQTSPTR*ARRRSR Trigger: CCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGT...CTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAATTCGCGGTAACACACTaGGCCCTGGTCAGATGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LSYDYFNEPIPQGSRKSKFAVTH*ALVRCS Trigger: GGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAA...TTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | AACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGTTCGCGGTAACACACTaGGCCCTGGTCAGATGTTCC | + |
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Preference number: 4 (lower is better) Translates to: NSSFTVVGFSLLQTIRLLFAVTH*ALVRCS Trigger: GGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAA...CAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CCTGCAGCTCCGAATTCCTTTTGTAACTCCTCCAGTGTTGAATACTCTTTGACTAAAGTGCACTTCTCATaGCTGCTGGCGGTCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: PAAPNSFCNSSSVEYSLTKVHFS*LLAVSG Trigger: GCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTT...AGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | TGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGCCCCAGTACACACTCTaGGAAGAGCTCCCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: CLYKNNSSFTVVGFSLLQPQYTL*EELPKS Trigger: GGACTTGGGGAGCTCTTCTCAGAGTGTGTACTGGGG...CTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 |
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| CDS-3UTR GCA 90 bp | TCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGAGCTCCCCAAGTCCTaGAGCTCCGAATTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: SFTVVGFSLLQTIRLLNLELPKS*SSEFLL Trigger: CAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTC...TAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR GCA 90 bp | GTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTTCTGAGCTCCCCAAGTCCTaGAGCTCCGAATTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: VVGFSLLQTIRLLNLVFSELPKS*SSEFLL Trigger: CAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTC...AGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR TCA 90 bp | AGAAGAGCTCCCCAAGTCCTGCAGCTCCGAATTCCTTTTGTAACTCCTCCAGTGGCATTTCTTTCCACTTaGGTCCACATCTACTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: RRAPQVLQLRIPFVTPPVAFLST*VHIYFG Trigger: TCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGC...CACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR GCA 90 bp | AAGGCAGCAGGAAATCAAAACCAGGCTGTTTTACCAACGGATCCTGTCATTCACCACTTTCTGGCAAAGTaGACTTCTCATGGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KAAGNQNQAVLPTDPVIHHFLAK*TSHGCW Trigger: CCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTG...GTGAATGACAGGATCCGTTGGTAAAACAGCCTGGTTTTGATTTCCTGCTGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | ATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCCTCGCTTTTCTTCTCTaGGAAGAGCTCCCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: IKTTVPLLWWVSLSSRQSLAFLL*EELPKS Trigger: GGACTTGGGGAGCTCTTCTCAGAGAAGAAAAGCGAG...GGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000164573.8 |
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| CDS-3UTR CCA 90 bp | AACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGCTGACACGAGCTTCCTaGCTTCTCCAAGTAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: NSSFTVVGFSLLQTIRLLLTRAS*LLQVTS Trigger: AGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAG...CAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | TCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTACTGACACGAGCTTCCTaGCTTCTCCAAGTAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: SFTVVGFSLLQTIRLLNLLTRAS*LLQVTS Trigger: AGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAG...TAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | CTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAACTGACACGAGCTTCCTaGCTTCTCCAAGTAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: LSYDYFNEPIPQGSRKSKLTRAS*LLQVTS Trigger: AGAAGTTACTTGGAGAAGCCAGGAAGCTCGTGTCAG...TTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | TCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAACCAAGTCTGAGATTCTGCTaGATCCAAAGAACCAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: SYDYFNEPIPQGSRKSKPSLRFC*IQRTSS Trigger: CGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACT...TGGTTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CCA 90 bp | ATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCCCCCGTCGCACTTTCTaGCAAAGTGCACTTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: IKTTVPLLWWVSLSSRQSPRRTF*QSALLM Trigger: CATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGG...GGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTAT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS-3UTR TCA 90 bp | GTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTTCTGAATCAGGTACTCCTTaGTGTTGCTTCTGTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VVGFSLLQTIRLLNLVFSESGTP*CCFCLL Trigger: AAGGAGACAGAAGCAACATCAAGGAGTACCTGATTC...AGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR TCA 90 bp | AACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTAAATCAGGTACTCCCATaGACATCAGTCTTCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: NNSSFTVVGFSLLQTIRLNQVLP*TSVFLS Trigger: TGACAGGAAGACTGATGTTCATGGGAGTACCTGATT...TAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR GCA 90 bp | TATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCGAGCTCCCCAAGTCCTaGAGCTCCGAATTCCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: YKNNSSFTVVGFSLLQTIELPKS*SSEFLL Trigger: CAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCTC...GATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR CCA 90 bp | TTTTCACATATGAATTTCGATTTGAACTCACTGTGTATTCTTCCAGCTCTCCAGAAAGTGCACTTCTCATaGCTGCTGGCGGTCTCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: FSHMNFDLNSLCILPALQKVHFS*LLAVSG Trigger: GCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTT...CTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106466.10 |
||
| CDS-3UTR CCA 90 bp | GCTCCGAATTCCTTTTGTAACTCCTCCAGTGTTGAATACTCTTTGACTTCAAACCCCCGTCGCACTTTCTaGCAAAGTGCACTTCTCATG | + |
|
Preference number: 4 (lower is better) Translates to: APNSFCNSSSVEYSLTSNPRRTF*QSALLM Trigger: CATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGG...GTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
||
| CDS-3UTR TCA 90 bp | GAAATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGAATCAGGTACTCCTTaGTGTTGCTTCTGTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: EISDCSLMTTSMSPSPKAESGTP*CCFCLL Trigger: AAGGAGACAGAAGCAACATCAAGGAGTACCTGATTC...TGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039761.12 |
||
| CDS-3UTR TCA 90 bp | CAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAAACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: QFLYCGGFLSPPDNPSIETLEVF*RIRYSL Trigger: CAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGT...TTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR TCA 90 bp | CAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: QQFLYCGGFLSPPDNPSITLEVF*RIRYSL Trigger: CAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGT...AATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR TCA 90 bp | AAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCGCATTTCTTTCCACTTaGGTCCACATCTACTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: KTTVPLLWWVSLSSRQSVAFLST*VHIYFG Trigger: TCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGC...GACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
||
| CDS-3UTR TCA 90 bp | TCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTGTTGAATACTCTTTaGCTTCAAACGCCAGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: SFTVVGFSLLQTIRLLNLVLNTL*LQTPET Trigger: GGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACAC...TAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR TCA 90 bp | TCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAACACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SLMTTSMSPSPKAAGNQNTLEVF*RIRYSH Trigger: ATGGGAGTACCTGATTCTTCAGAAAACCTCCAAAGT...GTTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGAGTCTGAGATTCTGCTaGATCCAAAGAACCAGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: CLYKNNSSFTVVGFSLLQSLRFC*IQRTSS Trigger: CGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACT...CTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS-3UTR CCA 90 bp | TCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCA | + |
|
Preference number: 4 (lower is better) Translates to: SDCSLMTTSMSPSPKAAGSPHLL*RFSEES Trigger: TGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACT...TCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
||
| CDS-3UTR GCA 90 bp | AATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCACTTTCTGGCAAAGTaGACTTCTCATGGCTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NCLYKNNSSFTVVGFSLLHFLAK*TSHGCW Trigger: CCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTG...GAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS-3UTR TCA 90 bp | GTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGAGTGTTGAATACTCTTTaGCTTCAAACGCCAGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: VSIKTTVPLLWWVSLSSRVLNTL*LQTPET Trigger: GGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACAC...TCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR CCA 90 bp | CTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCA | + |
|
Preference number: 4 (lower is better) Translates to: LYCGGFLSPPDNPSIEPSSPHLL*RFSEES Trigger: TGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACT...ACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
||
| CDS-3UTR CCA 90 bp | TCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCA | + |
|
Preference number: 4 (lower is better) Translates to: SFTVVGFSLLQTIRLLNLSPHLL*RFSEES Trigger: TGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACT...TAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
||
| CDS-3UTR CCA 90 bp | GTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCTTTTCTAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCA | + |
|
Preference number: 4 (lower is better) Translates to: VVGFSLLQTIRLLNLVFSSPHLL*RFSEES Trigger: TGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACT...AGAAAAGACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
||
| CDS-3UTR TCA 90 bp | TGCTTCAGAGAAATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCGCATTTCTTTCCACTTaGGTCCACATCTACTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: CFREISDCSLMTTSMSPSAFLST*VHIYFG Trigger: TCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGC...GGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATTTCTCTGAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
||
| CDS-3UTR TCA 90 bp | AATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: NCLYKNNSSFTVVGFSLLTLEVF*RIRYSL Trigger: CAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGT...GAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR TCA 90 bp | CAAATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCGTGTTGAATACTCTTTaGCTTCAAACGCCAGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: QIVSIKTTVPLLWWVSLSVLNTL*LQTPET Trigger: GGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACAC...GGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAATTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR TCA 90 bp | TTTTCACATATGAATTTCGATTTGAACTCACTGTGTATTCTTCCAGCTCTCCAGGCATTTCTTTCCACTTaGGTCCACATCTACTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FSHMNFDLNSLCILPALQAFLST*VHIYFG Trigger: TCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGC...CTGGAGAGCTGGAAGAATACACAGTGAGTTCAAATCGAAATTCATATGTGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106466.10 |
||
| 3UTR CAA 72 bp | AATTCCTTTTGTAACTCCTCCAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAACCTTTTGTGTTCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: NSFCNSSSVEYS*TSNARNLLCSV Trigger: AACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
||
| CDS CCA 90 bp | GAGGGCACTGCGCACCGTCTGAACAGCTCAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCTCCTGCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: EGTAHRLNSSTSPTR*ARRRSRPAPRAPAA Trigger: TGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
||
| CDS CCA 90 bp | ACACAGCCCCATCTGTCTCTGAACAGCTCAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCTCCTGCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: TQPHLSLNSSTSPTR*ARRRSRPAPRAPAA Trigger: TGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATGGGGCTGTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS CCA 90 bp | GGTCCATCGTCCCCCGTCGCACTTTCTGGCAAAGTGCACTTCTCATaGCTGCTGGCGGTCTCCGGCTGGCTGAGGACAAGTCTGAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: GPSSPVALSGKVHFS*LLAVSGWLRTSLRF Trigger: GAATCTCAGACTTGTCCTCAGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
||
| CDS CCA 90 bp | ACGCAAAAGAGTCATCCACGGTCCATCGTCCCCCGTCGCACTTTCTaGCAAAGTGCACTTCTCATGGCTGCTGGCGGTCTCCGGCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: TQKSHPRSIVPRRTF*QSALLMAAGGLRLA Trigger: AGCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGGATGACTCTTTTGCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | TATTTGGAGGAGCTGGGTTTCACGAGGAGGGCACTGCGCACCGTCTaGACAGCTCAACATCTCCCACTCGTTGGGCCCGCAGAAGATCGC | + |
|
Preference number: 5 (lower is better) Translates to: YLEELGFTRRALRTV*TAQHLPLVGPAEDR Trigger: GCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTCCTCGTGAAACCCAGCTCCTCCAAATA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
||
| CDS CCA 90 bp | AGCTTCCTGGCTTCTCCAAGTAACTTCTCCTTCGCGGTAACACACTaGGCCCTGGTCAGATGTTCCGAGGTAACCGAGATGCCGGGTAGA | + |
|
Preference number: 5 (lower is better) Translates to: SFLASPSNFSFAVTH*ALVRCSEVTEMPGR Trigger: TCTACCCGGCATCTCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | GCCCACTTCTCCACGGCTTTGACATATTTAGTCCTCGCTCTCATGTaGTCTAAACGCAAAAGAGTCATCCACGGTCCATCGTCCCCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: AHFSTALTYLVLALM*SKRKRVIHGPSSPV Trigger: GACGGGGGACGATGGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
||
| CDS-3UTR CAA 90 bp | AATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCG | + |
|
Preference number: 5 (lower is better) Translates to: NFRLLSYDYFNEPIPQGSNISHS*GPQKIA Trigger: CGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTT...GCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
||
| CDS-3UTR CAA 90 bp | CTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCG | + |
|
Preference number: 5 (lower is better) Translates to: LYCGGFLSPPDNPSIEPSNISHS*GPQKIA Trigger: CGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTT...ACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | CTGAGGACAAGTCTGAGATTCTGCTGGATCCAAAGAACCAGCTCGTaGACCATCGGTTCTGACACGAGCTTCCTGGCTTCTCCAAGTAAC | + |
|
Preference number: 5 (lower is better) Translates to: LRTSLRFCWIQRTSS*TIGSDTSFLASPSN Trigger: GTTACTTGGAGAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | TCTGGAATCGGCTGCCATTTTTCAGCAGCCTTAACAAGCATTTCCTaGCTGCCTTCCACGTGGCTGACAACCAACTACAGCGTCCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SGIGCHFSAALTSIS*LPSTWLTTNYSVLL Trigger: CAACAGGACGCTGTAGTTGGTTGTCAGCCACGTGGAAGGCAGTCAGGAAATGCTTGTTAAGGCTGCTGAAAAATGGCAGCCGATTCCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
||
| CDS CCA 90 bp | TCTGGGTTAGAAGAGAAGGTCTCCATGCTGCGTCCAGCAGAAGTCTaGAATCGGCTGCCATTTTTCAGCAGCCTTAACAAGCATTTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: SGLEEKVSMLRPAEV*NRLPFFSSLNKHFL Trigger: CAGGAAATGCTTGTTAAGGCTGCTGAAAAATGGCAGCCGATTCCAGACTTCTGCTGGACGCAGCATGGAGACCTTCTCTTCTAACCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
||
| CDS-3UTR CAA 90 bp | ATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCG | + |
|
Preference number: 5 (lower is better) Translates to: IVSIKTTVPLLWWVSLSSNISHS*GPQKIA Trigger: CGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTT...GGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | AACTCTAAGGGCACATCCTCACCCACAAGTCCTTCAGCTGTTGTGTaGATTCTAAACACAGCCCCATCTGTCTCTGAACAGCTCAACATC | + |
|
Preference number: 5 (lower is better) Translates to: NSKGTSSPTSPSAVV*ILNTAPSVSEQLNI Trigger: GATGTTGAGCTGTTCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS TCA 90 bp | AACTCTAAGGGCACATCCTCACCCACAAGTCCTTCAGCTGTTGTGTaGATTCTAAACACAGCCCCATCTGTCTCTGGGTTAGAAGAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NSKGTSSPTSPSAVV*ILNTAPSVSGLEEK Trigger: CTTCTCTTCTAACCCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCCCTTAGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
||
| CDS-3UTR CAA 90 bp | AACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGCACTTCTCCACGGCTTaGACATATTTAGTCCTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: NSSFTVVGFSLLQTIRLLHFSTA*TYLVLA Trigger: AGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTG...CAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS-3UTR CAA 90 bp | TTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCCACTTCTCCACGGCTTaGACATATTTAGTCCTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: FTVVGFSLLQTIRLLNLVHFSTA*TYLVLA Trigger: AGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTG...GACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
||
| CDS-3UTR CAA 90 bp | AACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTAAGGTACTCCTTGATGTaGCTTCTGTCTCCTTGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: NNSSFTVVGFSLLQTIRLRYSLM*LLSPCS Trigger: ACTACAAGGAGACAGAAGCAACATCAAGGAGTACCT...TAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR CAA 90 bp | AAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTAGGTACTCCTTGATGTaGCTTCTGTCTCCTTGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: KQQFLYCGGFLSPPDNPSRYSLM*LLSPCS Trigger: ACTACAAGGAGACAGAAGCAACATCAAGGAGTACCT...AGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR CAA 90 bp | TTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTCAGAATCAGGTACTCCTaGATGTTGCTTCTGTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FTVVGFSLLQTIRLLNLVRIRYS*MLLLSP Trigger: AGGAGACAGAAGCAACATCAAGGAGTACCTGATTCT...GACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
||
| CDS-3UTR CAA 90 bp | AACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAGAATCAGGTACTCCTaGATGTTGCTTCTGTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: NSSFTVVGFSLLQTIRLLRIRYS*MLLLSP Trigger: AGGAGACAGAAGCAACATCAAGGAGTACCTGATTCT...CAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR CAA 90 bp | CTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAACCTAGTAGAATCAGGTACTCCTaGATGTTGCTTCTGTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LYCGGFLSPPDNPSIEPSRIRYS*MLLLSP Trigger: AGGAGACAGAAGCAACATCAAGGAGTACCTGATTCT...ACTAGGTTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR CAA 90 bp | TCTCTTATGACTACTTCAATGAGCCCATCCCCCAAGGCAGCAGGAAATCAAAACTGCATTTCTTTCCACTaGAGTCCACATCTACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: SLMTTSMSPSPKAAGNQNCISFH*SPHLLW Trigger: CCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCA...GTTTTGATTTCCTGCTGCCTTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CAA 90 bp | TGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGAGGTACTCCTTGATGTaGCTTCTGTCTCCTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: CLYKNNSSFTVVGFSLLQRYSLM*LLSPCS Trigger: ACTACAAGGAGACAGAAGCAACATCAAGGAGTACCT...CTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR CAA 90 bp | CAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTAACGCCAGAAACCTTTaGTGTTCCGTTTGTACTTTT | + |
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Preference number: 5 (lower is better) Translates to: QQFLYCGGFLSPPDNPSINARNL*CSVCTF Trigger: AAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTT...AATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR CAA 90 bp | AAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: KTTVPLLWWVSLSSRQSVSVEYS*TSNARN Trigger: GTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACT...GACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS-3UTR CAA 90 bp | CAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCGTCTATTGAAAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: QFLYCGGFLSPPDNPSIESVEYS*TSNARN Trigger: GTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACT...TTCAATAGACGGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS TCA 90 bp | TTGCATTTCTTTCCACTTGAGTCCACATCTACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCTTGATGTTGCTTCTGTCTCCTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: LHFFPLESTSTLEVF*RIRYSLMLLLSPCS Trigger: ACTACAAGGAGACAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164573.8 ENSMUST00000164925.9 |
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| CDS-3UTR CAA 90 bp | TGCTTCAGAGAAATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCTGCATTTCTTTCCACTaGAGTCCACATCTACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: CFREISDCSLMTTSMSPSCISFH*SPHLLW Trigger: CCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCA...GGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATTTCTCTGAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039761.12 ENSMUST00000170781.2 |
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| CDS-3UTR CAA 90 bp | ATTGTCTCTATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCTGCATTTCTTTCCACTaGAGTCCACATCTACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: IVSIKTTVPLLWWVSLSSCISFH*SPHLLW Trigger: CCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCA...GGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTATAGAGACAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 ENSMUST00000170781.2 |
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| CDS-3UTR CAA 90 bp | CAGAGAAATTTCAGATTGCTCTCTTATGACTACTTCAATGAGCCCATCCCCCAAAACGCCAGAAACCTTTaGTGTTCCGTTTGTACTTTT | + |
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Preference number: 5 (lower is better) Translates to: QRNFRLLSYDYFNEPIPQNARNL*CSVCTF Trigger: AAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTT...TTGGGGGATGGGCTCATTGAAGTAGTCATAAGAGAGCAATCTGAAATTTCTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039761.12 |
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| CDS-3UTR CAA 90 bp | ATAAAAACAACAGTTCCTTTACTGTGGTGGGTTTCTCTCTCCTCCAGACAATCCAACGCCAGAAACCTTTaGTGTTCCGTTTGTACTTTT | + |
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Preference number: 5 (lower is better) Translates to: IKTTVPLLWWVSLSSRQSNARNL*CSVCTF Trigger: AAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTT...GGATTGTCTGGAGGAGAGAGAAACCCACCACAGTAAAGGAACTGTTGTTTTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000164573.8 |
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| CDS TCA 90 bp | TGTTGCTTCTGTCTCCTTGTAGTAAAATCAGTATTAATTTACCCATaGACATCAGTCTTCCTGTCAGCCTTAACTCTGAAGCCCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: CCFCLLVVKSVLIYP*TSVFLSALTLKPTS Trigger: AGAAGTGGGCTTCAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGGAGACAGAAGCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 |
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| CDS CCA 90 bp | TCATTTTCTCTTTGCATTTCTTTCCACTTGAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCAGGTACTCCCATGAACATCAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SFSLCISFHLSPHLL*RFSEESGTPMNISL Trigger: AAGACTGATGTTCATGGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS-3UTR CAA 90 bp | CTGCGAGTTTATCTCCCCTTGGACATAGTTAGTACATTTTACCATTATTTGAGATGCATTTCTTTCCACTaGAGTCCACATCTACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LRVYLPLDIVSTFYHYLRCISFH*SPHLLW Trigger: CCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCA...TCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGATAAACTCGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106466.10 |
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| CDS-3UTR CAA 90 bp | CTGCGAGTTTATCTCCCCTTGGACATAGTTAGTACATTTTACCATTATTTGAGAAGTGTTGAATACTCTTaGACTTCAAACGCCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: LRVYLPLDIVSTFYHYLRSVEYS*TSNARN Trigger: GTTTCTGGCGTTTGAAGTCAAAGAGTATTCAACACT...TCTCAAATAATGGTAAAATGTACTAACTATGTCCAAGGGGAGATAAACTCGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106466.10 |
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| CDS CAA 90 bp | GGAGGGCACTGCGCACCGTCTGAACAGCTCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCTCCTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: GGHCAPSEQLNISHS*GPQKIAASAESSCR Trigger: GCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS CCA 72 bp | GCGCACCGTCTGAACAGCTCAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: AHRLNSSTSPTR*ARRRSRPAPRA Trigger: AGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS CAA 72 bp | TGCGCACCGTCTGAACAGCTCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: CAPSEQLNISHS*GPQKIAASAES Trigger: GCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS GCA 72 bp | ACGGTCCATCGTCCCCCGTCGCACTTTCTGGCAAAGTaGACTTCTCATGGCTGCTGGCGGTCTCCGGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: TVHRPPSHFLAK*TSHGCWRSPAG Trigger: GCCAGCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
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| CDS CAA 90 bp | AACACAGCCCCATCTGTCTCTGAACAGCTCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCTCCTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: NTAPSVSEQLNISHS*GPQKIAASAESSCR Trigger: GCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATGGGGCTGTGTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS TCA 72 bp | GAGCTGGGTTTCACGAGGAGGGCACTGCGCACCGTCTaGACAGCTCAACATCTCCCACTCGTTGGGCCCGCA | + |
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Preference number: 6 (lower is better) Translates to: ELGFTRRALRTV*TAQHLPLVGPA Trigger: TGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGACGGTGCGCAGTGCCCTCCTCGTGAAACCCAGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS CAA 72 bp | CCATCTGTCTCTGAACAGCTCAACATCTCCCACTCGTaGGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: PSVSEQLNISHS*GPQKIAASAES Trigger: GCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS CCA 72 bp | CATCTGTCTCTGAACAGCTCAACATCTCCCACTCGTTaGGCCCGCAGAAGATCGCGGCCAGCGCCGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: HLSLNSSTSPTR*ARRRSRPAPRA Trigger: AGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGATGTTGAGCTGTTCAGAGACAGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS CCA 72 bp | AGTCATCCACGGTCCATCGTCCCCCGTCGCACTTTCTaGCAAAGTGCACTTCTCATGGCTGCTGGCGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SHPRSIVPRRTF*QSALLMAAGGL Trigger: GAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGGATGACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
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| CDS CCA 72 bp | GCTTCTCCAAGTAACTTCTCCTTCGCGGTAACACACTaGGCCCTGGTCAGATGTTCCGAGGTAACCGAGATG | + |
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Preference number: 6 (lower is better) Translates to: ASPSNFSFAVTH*ALVRCSEVTEM Trigger: CATCTCGGTTACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000170781.2 |
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| CDS TCA 72 bp | AGTCTGAGATTCTGCTGGATCCAAAGAACCAGCTCGTaGACCATCGGTTCTGACACGAGCTTCCTGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SLRFCWIQRTSS*TIGSDTSFLAS Trigger: AGAAGCCAGGAAGCTCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000170781.2 |
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| CDS TCA 72 bp | GGCTGCCATTTTTCAGCAGCCTTAACAAGCATTTCCTaGCTGCCTTCCACGTGGCTGACAACCAACTACAGC | + |
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Preference number: 6 (lower is better) Translates to: GCHFSAALTSIS*LPSTWLTTNYS Trigger: GCTGTAGTTGGTTGTCAGCCACGTGGAAGGCAGTCAGGAAATGCTTGTTAAGGCTGCTGAAAAATGGCAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS TCA 72 bp | GGCACATCCTCACCCACAAGTCCTTCAGCTGTTGTGTaGATTCTAAACACAGCCCCATCTGTCTCTGAACAG | + |
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Preference number: 6 (lower is better) Translates to: GTSSPTSPSAVV*ILNTAPSVSEQ Trigger: CTGTTCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000170781.2 |
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| CDS TCA 72 bp | GGCACATCCTCACCCACAAGTCCTTCAGCTGTTGTGTaGATTCTAAACACAGCCCCATCTGTCTCTGGGTTA | + |
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Preference number: 6 (lower is better) Translates to: GTSSPTSPSAVV*ILNTAPSVSGL Trigger: TAACCCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGAGGATGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106467.8 |
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| CDS TCA 72 bp | TCCACGGCTTTGACATATTTAGTCCTCGCTCTCATGTaGTCTAAACGCAAAAGAGTCATCCACGGTCCATCG | + |
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Preference number: 6 (lower is better) Translates to: STALTYLVLALM*SKRKRVIHGPS Trigger: CGATGGACCGTGGATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164925.9 ENSMUST00000170781.2 |
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| CDS TCA 72 bp | TTTCCACTTGAGTCCACATCTACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCCATGAACATCAGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: FPLESTSTLEVF*RIRYSHEHQSS Trigger: GGAAGACTGATGTTCATGGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS TCA 72 bp | TTTCCACTTGAGTCCACATCTACTTTGGAGGTTTTCTaGAGAATCAGGTACTCCTTGATGTTGCTTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: FPLESTSTLEVF*RIRYSLMLLLS Trigger: AGACAGAAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164573.8 ENSMUST00000164925.9 |
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| CDS CCA 72 bp | CTTTGCATTTCTTTCCACTTGAGTCCACATCTACTTTaGAGGTTTTCTGAAGAATCAGGTACTCCCATGAAC | + |
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Preference number: 6 (lower is better) Translates to: LCISFHLSPHLL*RFSEESGTPMN Trigger: GTTCATGGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170781.2 |
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| CDS CAA 72 bp | TTTGACTTCAAACGCCAGAAACCTTTTGTGTTCCGTTaGTACTTTTGTTTCAGACAGTACACTAATCATTTT | + |
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Preference number: 6 (lower is better) Translates to: FDFKRQKPFVFR*YFCFRQYTNHF Trigger: AAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGTTTGAAGTCAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000039761.12 ENSMUST00000106466.10 ENSMUST00000106467.8 ENSMUST00000164573.8 ENSMUST00000164925.9 |
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