Pregenerated sensors for RWDD2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041079Ensembl transcript IDs: ENSMUST00000039101.12
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTCCACCAAGCTGTAGAGATGGCTCAGAGGTTAAAAGGGTGCACTaGTCTTGCAGAGGACCCAAGTTTGGCTCCCAGCACCCACACCGG | + |
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Preference number: 1 (lower is better) Translates to: FPPSCRDGSEVKRVH*SCRGPKFGSQHPHR Trigger: CCGGTGTGGGTGCTGGGAGCCAAACTTGGGTCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCTACAGCTTGGTGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 90 bp | ACAGAGCCTCGTGTAGCCCAGCTGGCCTTCAACTTCCCATCCTCCTaGCTCTACTTCCCAAGTGCTGGGATTATAAGCATGTGCCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: TEPRVAQLAFNFPSS*LYFPSAGIISMCLQ Trigger: CTGAAGGCACATGCTTATAATCCCAGCACTTGGGAAGTAGAGGCAGGAGGATGGGAAGTTGAAGGCCAGCTGGGCTACACGAGGCTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR TCA 90 bp | ACTGTAACCTACAGCCCAATGCAGCTGCAAGAGAGGCCAGGAGGGTaGACAGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGT | + |
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Preference number: 1 (lower is better) Translates to: TVTYSPMQLQERPGG*TGSFSRFLVKAEEC Trigger: ACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCTGTTCACCCTCCTGGCCTCTCTTGCAGCTGCATTGGGCTGTAGGTTACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 90 bp | CGCATGTGGCAAGGTGTCTTGTACAATGACATCTCTGAGATAGCTTaGCCCTTTCTCTTGCCATCACTTCAGGGGCCATGGCAGAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: RMWQGVLYNDISEIA*PFLLPSLQGPWQKE Trigger: CTCTTTCTGCCATGGCCCCTGAAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTACAAGACACCTTGCCACATGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 90 bp | TCTGAGATAGCTTGGCCCTTTCTCTTGCCATCACTTCAGGGGCCATaGCAGAAAGAGAAGAGAGGCAAATTCATCCCCAGAAATCCTGCA | + |
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Preference number: 1 (lower is better) Translates to: SEIAWPFLLPSLQGP*QKEKRGKFIPRNPA Trigger: TGCAGGATTTCTGGGGATGAATTTGCCTCTCTTCTCTTTCTGCCATGGCCCCTGAAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 90 bp | GTGAACAGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTaGGAAATCCCTAGCAAGTCGAACCATCAAAATTACCTTCACATA | + |
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Preference number: 1 (lower is better) Translates to: VNRQLFQVPSEGRRV*EIPSKSNHQNYLHI Trigger: TATGTGAAGGTAATTTTGATGGTTCGACTTGCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCTGTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 90 bp | TCCAGGGGATCTGATACCCCAAATATATTTACATGTTTATGTTCATaGATGCACCCTTGGAGGACAGAGTACATCAAATGCCCTGAAGTA | + |
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Preference number: 1 (lower is better) Translates to: SRGSDTPNIFTCLCS*MHPWRTEYIKCPEV Trigger: TACTTCAGGGCATTTGATGTACTCTGTCCTCCAAGGGTGCATGCATGAACATAAACATGTAAATATATTTGGGGTATCAGATCCCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCGTTAAAAGGGTGCACTaGTCTTGCAGAGGACCCAAG | + |
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Preference number: 2 (lower is better) Translates to: RQLFQVPSEGRRVWEIPSVKRVH*SCRGPK Trigger: CTTGGGTCCTCTGCAAGAGCAGTGCACCCTTTTAAC...GCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR CCA 90 bp | CCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCAAGTCGAACCATCAAAATCCCTGCCAGGGGTGCTaGGAACTGAACTTAGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: PSEGRRVWEIPSKSNHQNPCQGC*ELNLGP Trigger: AGGACCTAAGTTCAGTTCCCAGCACCCCTGGCAGGG...ATTTTGATGGTTCGACTTGCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR TCA 90 bp | TCAGATCCAGCTCACGTCAAGAAATTTCCACCAAGCTGTAGAGATGGCTCAGAGTCAACAGAGGAACAGTaGGCCAACAGGTCTGACTTC | + |
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Preference number: 2 (lower is better) Translates to: SDPAHVKKFPPSCRDGSESTEEQ*ANRSDF Trigger: GAAGTCAGACCTGTTGGCTCACTGTTCCTCTGTTGA...CTCTGAGCCATCTCTACAGCTTGGTGGAAATTTCTTGACGTGAGCTGGATCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCCTACTTCCCAAGTGCTaGGATTATAAGCATGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: RQLFQVPSEGRRVWEIPSLLPKC*DYKHVP Trigger: AGGCACATGCTTATAATCCCAGCACTTGGGAAGTAG...GCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR CCA 90 bp | GTCTTGTACAATGACATCTCTGAGATAGCTTGGCCCTTTCTCTTGCCATCACTTGAAGGCAGAAGAGTGTaGGAAATCCCTAGCAAGTCG | + |
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Preference number: 2 (lower is better) Translates to: VLYNDISEIAWPFLLPSLEGRRV*EIPSKS Trigger: CGACTTGCTAGGGATTTCCCACACTCTTCTGCCTTC...AAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTACAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR CCA 90 bp | CCAGGGGTGCTGGGAACTGAACTTAGGTCCTTGGCACTAGCAGCATATGCTCTTTTTTTCTCTCAGGCATaGCAAGTTTTAACTGATACA | + |
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Preference number: 2 (lower is better) Translates to: PGVLGTELRSLALAAYALFFSQA*QVLTDT Trigger: TGTATCAGTTAAAACTTGCCATGCCTGAGAGAAAAA...AAGAGCATATGCTGCTAGTGCCAAGGACCTAAGTTCAGTTCCCAGCACCCCTGG 46% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR CCA 90 bp | CCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCAAGTCGAACCATCAAAATTCATGCATGCACCCTTaGAGGACAGAGTACATCAAA | + |
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Preference number: 2 (lower is better) Translates to: PSEGRRVWEIPSKSNHQNSCMHP*RTEYIK Trigger: TTTGATGTACTCTGTCCTCCAAGGGTGCATGCATGA...ATTTTGATGGTTCGACTTGCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR-3UTR TCA 90 bp | GTCTTGTACAATGACATCTCTGAGATAGCTTGGCCCTTTCTCTTGCCATCACTTTATGCTCTTAACTTCTaGGTCATTTCTCCACCCTTC | + |
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Preference number: 2 (lower is better) Translates to: VLYNDISEIAWPFLLPSLYALNF*VISPPF Trigger: GAAGGGTGGAGAAATGACTCAGAAGTTAAGAGCATA...AAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTACAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CAA 90 bp | AAATCCCTAGCAAGTCGAACCATCAAAATTACCTTCACATATAATTaGTCTTTCAAGTTTCATGAGACAGAGCCTCGTGTAGCCCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: KSLASRTIKITFTYN*SFKFHETEPRVAQL Trigger: CAGCTGGGCTACACGAGGCTCTGTCTCATGAAACTTGAAAGACAAATTATATGTGAAGGTAATTTTGATGGTTCGACTTGCTAGGGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 72 bp | AGAGATGGCTCAGAGGTTAAAAGGGTGCACTGCTCTTaGAGAGGACCCAAGTTTGGCTCCCAGCACCCACAC | + |
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Preference number: 3 (lower is better) Translates to: RDGSEVKRVHCS*RGPKFGSQHPH Trigger: GTGTGGGTGCTGGGAGCCAAACTTGGGTCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 72 bp | AGCTGTAGAGATGGCTCAGAGGTTAAAAGGGTGCACTaGTCTTGCAGAGGACCCAAGTTTGGCTCCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: SCRDGSEVKRVH*SCRGPKFGSQH Trigger: GTGCTGGGAGCCAAACTTGGGTCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCTACAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 72 bp | CACCAAGCTGTAGAGATGGCTCAGAGGTTAAAAGGGTaGACTGCTCTTGCAGAGGACCCAAGTTTGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: HQAVEMAQRLKG*TALAEDPSLAP Trigger: GGGAGCCAAACTTGGGTCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCTACAGCTTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 72 bp | GCTTGGCCCTTTCTCTTGCCATCACTTCAGGGGCCATaGCAGAAAGAGAAGAGAGGCAAATTCATCCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: AWPFLLPSLQGP*QKEKRGKFIPR Trigger: TCTGGGGATGAATTTGCCTCTCTTCTCTTTCTGCCATGGCCCCTGAAGTGATGGCAAGAGAAAGGGCCAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 72 bp | CAAGGTGTCTTGTACAATGACATCTCTGAGATAGCTTaGCCCTTTCTCTTGCCATCACTTCAGGGGCCATGG | + |
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Preference number: 3 (lower is better) Translates to: QGVLYNDISEIA*PFLLPSLQGPW Trigger: CCATGGCCCCTGAAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTACAAGACACCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR GCA 72 bp | TGCCTCTACTTCCCAAGTGCTGGGATTATAAGCATGTaGCTTCAGATCCAGCTCACGTCAAGAAATTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: CLYFPSAGIISM*LQIQLTSRNFH Trigger: GTGGAAATTTCTTGACGTGAGCTGGATCTGAAGGCACATGCTTATAATCCCAGCACTTGGGAAGTAGAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 72 bp | CAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTaGGAAATCCCTAGCAAGTCGAACCATCAAAATTAC | + |
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Preference number: 3 (lower is better) Translates to: QLFQVPSEGRRV*EIPSKSNHQNY Trigger: GTAATTTTGATGGTTCGACTTGCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR TCA 72 bp | AGGTCCTTGGCACTAGCAGCATATGCTCTTAACTTCTaGGTCATTTCTCCACCCTTCTCACTTAGTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: RSLALAAYALNF*VISPPFSLSNL Trigger: TAAATTACTAAGTGAGAAGGGTGGAGAAATGACTCAGAAGTTAAGAGCATATGCTGCTAGTGCCAAGGACCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CCA 72 bp | AATATATTTACATGTTTATGTTCATGCATGCACCCTTaGAGGACAGAGTACATCAAATGCCCTGAAGTAAAG | + |
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Preference number: 3 (lower is better) Translates to: NIFTCLCSCMHP*RTEYIKCPEVK Trigger: CTTTACTTCAGGGCATTTGATGTACTCTGTCCTCCAAGGGTGCATGCATGAACATAAACATGTAAATATATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR GCA 90 bp | TGTAACCTACAGCCCAATGCAGCTGCAAGAGAGGCCAGGAGGGTGAACAGGCAGCCTCTGGCTGGGCTGTaGTTTGCCTGGCGGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: CNLQPNAAAREARRVNRQPLAGL*FAWRGR Trigger: CCTCCCCCGCCAGGCAAAGCACAGCCCAGCCAGAGG...CTGCCTGTTCACCCTCCTGGCCTCTCTTGCAGCTGCATTGGGCTGTAGGTTACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR TCA 90 bp | AGCTCCCTGCCAGGGGTGCTGGGAACTGAACTTAGGTCCTTGGCACTAGCAGCAAGATCTGTGTTCAGCTaGGTCTGCTGGGATCTACTC | + |
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Preference number: 4 (lower is better) Translates to: SSLPGVLGTELRSLALAARSVFS*VCWDLL Trigger: GAGTAGATCCCAGCAGACTCAGCTGAACACAGATCT...TGCTGCTAGTGCCAAGGACCTAAGTTCAGTTCCCAGCACCCCTGGCAGGGAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR GCA 90 bp | AATTCATCCCCAGAAATCCTGCACTGTAACCTACAGCCCAATGCAGCTGCAAGAGGCTGGGCTGTGCTTTaGCTGGCGGGGGAGGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: NSSPEILHCNLQPNAAARGWAVL*LAGEGK Trigger: TTTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCC...TCTTGCAGCTGCATTGGGCTGTAGGTTACAGTGCAGGATTTCTGGGGATGAATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | AGGCAAATTCATCCCCAGAAATCCTGCACTGTAACCTACAGCCCAATGCAGCTGGGGCTGTGCTTTGCCTaGCGGGGGAGGGCAAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: RQIHPQKSCTVTYSPMQLGLCFA*RGRAKL Trigger: AAGCTTTGCCCTCCCCCGCCAGGCAAAGCACAGCCC...CAGCTGCATTGGGCTGTAGGTTACAGTGCAGGATTTCTGGGGATGAATTTGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR TCA 90 bp | GCAGCTGCAAGAGAGGCCAGGAGGGTGAACAGGCAGCTTTTCCAGGTTCCTAGTAAAGTACACTTGCGATaGTCGCCCCTCCATTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: AAAREARRVNRQLFQVPSKVHLR*SPLHCP Trigger: AGGACAATGGAGGGGCGATCATCGCAAGTGTACTTT...ACTAGGAACCTGGAAAAGCTGCCTGTTCACCCTCCTGGCCTCTCTTGCAGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | AGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCGAAAGCGAGATCCTCTaGCTGGGCTGTGCTTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: RQLFQVPSEGRRVWEIPSESEIL*LGCALP Trigger: AGGCAAAGCACAGCCCAGCCAGAGGATCTCGCTTTC...GCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR TCA 90 bp | CCAGGGGTGCTGGGAACTGAACTTAGGTCCTTGGCACTAGCAGCATATGCTCTTTGGCTCCGTGGACACTaGAGGCCTTTTCTTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: PGVLGTELRSLALAAYALWLRGH*RPFLQE Trigger: TTCTTGAAGAAAAGGCCTTCAGTGTCCACGGAGCCA...AAGAGCATATGCTGCTAGTGCCAAGGACCTAAGTTCAGTTCCCAGCACCCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | TACCTCACAACCTCCTGTAACTCCAGCTCCAGGGGATCTGATACCCCAAATATACACTGGGGAACATACTaGCCAGGAGGTCCAACTCGG | + |
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Preference number: 4 (lower is better) Translates to: YLTTSCNSSSRGSDTPNIHWGTY*PGGPTR Trigger: CCGAGTTGGACCTCCTGGCCAGTATGTTCCCCAGTG...TATATTTGGGGTATCAGATCCCCTGGAGCTGGAGTTACAGGAGGTTGTGAGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | CCAGGGGTGCTGGGAACTGAACTTAGGTCCTTGGCACTAGCAGCATATGCTCTTTCCGCCAATGCCAGCTaGTCATTCACTATGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PGVLGTELRSLALAAYALSANAS*SFTMSS Trigger: TGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGA...AAGAGCATATGCTGCTAGTGCCAAGGACCTAAGTTCAGTTCCCAGCACCCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | TGTAACCTACAGCCCAATGCAGCTGCAAGAGAGGCCAGGAGGGTGAACAGGCAGACACCAAAGAACATCTaGAAAACATCCCCACATCCC | + |
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Preference number: 4 (lower is better) Translates to: CNLQPNAAAREARRVNRQTPKNI*KTSPHP Trigger: GGGATGTGGGGATGTTTTCCAGATGTTCTTTGGTGT...CTGCCTGTTCACCCTCCTGGCCTCTCTTGCAGCTGCATTGGGCTGTAGGTTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR TCA 90 bp | CCAAGCTGTAGAGATGGCTCAGAGGTTAAAAGGGTGCACTGCTCTTGCAGAGGACTGGCATTTAAGAACTaGTACAGCTGGCCAAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PSCRDGSEVKRVHCSCRGLAFKN*YSWPKS Trigger: GGACTTTGGCCAGCTGTATCAGTTCTTAAATGCCAG...TCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCTACAGCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| 3UTR CAA 72 bp | TACAATGACATCTCTGAGATAGCTTGGCCCTTTCTCTaGCCATCACTTCAGGGGCCATGGCAGAAAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: YNDISEIAWPFL*PSLQGPWQKEK Trigger: CTTCTCTTTCTGCCATGGCCCCTGAAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR GCA 90 bp | AGGCAGCTTTTCCAGGTTCCTAGTGAAGGCAGAAGAGTGTGGGAAATCCCTAGCCCAAGACAGTTCTTCTaGAGGTATGCTATCAGATCT | + |
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Preference number: 4 (lower is better) Translates to: RQLFQVPSEGRRVWEIPSPRQFF*RYAIRS Trigger: AGATCTGATAGCATACCTGCAGAAGAACTGTCTTGG...GCTAGGGATTTCCCACACTCTTCTGCCTTCACTAGGAACCTGGAAAAGCTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | CATTTCAGCCATATTAATTTTCTTCTTGTGACCCCAACCCTAGTACATCCTAGATCCAACTCGGAGAGCTaGGCCTCAGCCTGCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: HFSHINFLLVTPTLVHPRSNSES*ASACSI Trigger: GATGGAGCAGGCTGAGGCCCAGCTCTCCGAGTTGGA...TCTAGGATGTACTAGGGTTGGGGTCACAAGAAGAAAATTAATATGGCTGAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR GCA 90 bp | GAAGAGAGGCAAATTCATCCCCAGAAATCCTGCACTGTAACCTACAGCCCAATGATCGTAAAGTACACTTaGGATGATCGCCCCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: EERQIHPQKSCTVTYSPMIVKYT*DDRPSI Trigger: AATGGAGGGGCGATCATCGCAAGTGTACTTTACGAT...CATTGGGCTGTAGGTTACAGTGCAGGATTTCTGGGGATGAATTTGCCTCTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | GTCTTGTACAATGACATCTCTGAGATAGCTTGGCCCTTTCTCTTGCCATCACTTTTTCCTCTGGCTCCGTaGACACTGAAGGCCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: VLYNDISEIAWPFLLPSLFPLAP*TLKAFS Trigger: AGAAAAGGCCTTCAGTGTCCACGGAGCCAGAGGAAA...AAGTGATGGCAAGAGAAAGGGCCAAGCTATCTCAGAGATGTCATTGTACAAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR GCA 90 bp | GAAGAGAGGCAAATTCATCCCCAGAAATCCTGCACTGTAACCTACAGCCCAATGGTTCTTCTGCAGGTATaGTATCAGATCTGTGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: EERQIHPQKSCTVTYSPMVLLQV*YQICVQ Trigger: CTGAACACAGATCTGATAGCATACCTGCAGAAGAAC...CATTGGGCTGTAGGTTACAGTGCAGGATTTCTGGGGATGAATTTGCCTCTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CCA 90 bp | TCAGATCCAGCTCACGTCAAGAAATTTCCACCAAGCTGTAGAGATGGCTCAGAGCCTTTTCTTCAAGAATaGGAAATTTCCGCTGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SDPAHVKKFPPSCRDGSEPFLQE*EISAVL Trigger: AAGGACAGCGGAAATTTCCCATTCTTGAAGAAAAGG...CTCTGAGCCATCTCTACAGCTTGGTGGAAATTTCTTGACGTGAGCTGGATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CAA 90 bp | CCAAGCTGTAGAGATGGCTCAGAGGTTAAAAGGGTGCACTGCTCTTGCAGAGGATGGCTGGGCTGTGCTTaGCCTGGCGGGGGAGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: PSCRDGSEVKRVHCSCRGWLGCA*PGGGGQ Trigger: TTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCCA...TCCTCTGCAAGAGCAGTGCACCCTTTTAACCTCTGAGCCATCTCTACAGCTTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS TCA 90 bp | CAATACAATCTTTCAGCTCCGCCAATGCCAGCTGGTCATTCACTATaGGCTCATTCTCACTGGGGAACATACTGGCCAGGAGGTCCAACT | + |
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Preference number: 5 (lower is better) Translates to: QYNLSAPPMPAGHSL*AHSHWGTYWPGGPT Trigger: AGTTGGACCTCCTGGCCAGTATGTTCCCCAGTGAGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 90 bp | CCCCTCCATTGTCCTCTTCTCAATACAATCTTTCAGCTCCGCCAATaGCAGCTGGTCATTCACTATGAGCTCATTCTCACTGGGGAACAT | + |
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Preference number: 5 (lower is better) Translates to: PLHCPLLNTIFQLRQ*QLVIHYELILTGEH Trigger: ATGTTCCCCAGTGAGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTGAGAAGAGGACAATGGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 90 bp | GCTGCCTCAGAGAGGTCCAGGCTCACATTGATCGTAAAGTACACTTaGGATGATCGCCCCTCCATTGTCCTCTTCTCAATACAATCTTTC | + |
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Preference number: 5 (lower is better) Translates to: AASERSRLTLIVKYT*DDRPSIVLFSIQSF Trigger: GAAAGATTGTATTGAGAAGAGGACAATGGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS TCA 90 bp | CTCAGAGAGGTCCAGGCTCACATTGATCGTAAAGTACACTTGCGATaGTCGCCCCTCCATTGTCCTCTTCTCAATACAATCTTTCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LREVQAHIDRKVHLR*SPLHCPLLNTIFQL Trigger: GAGCTGAAAGATTGTATTGAGAAGAGGACAATGGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CCA 90 bp | ATTGTCCTCTTCTCAATACAATCTTTCAGCTCCGCCAATGCCAGCTaGTCATTCACTATGAGCTCATTCTCACTGGGGAACATACTGGCC | + |
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Preference number: 5 (lower is better) Translates to: IVLFSIQSFSSANAS*SFTMSSFSLGNILA Trigger: GGCCAGTATGTTCCCCAGTGAGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTGAGAAGAGGACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CAA 90 bp | TCAGATCCAGCTCACGTCAAGAAATTTCCACCAAGCTGTAGAGATGGCTCAGAGAGGTCCAGGCTCACATaGATCGTAAAGTACACTTGC | + |
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Preference number: 5 (lower is better) Translates to: SDPAHVKKFPPSCRDGSERSRLT*IVKYTC Trigger: GCAAGTGTACTTTACGATCAATGTGAGCCTGGACCT...CTCTGAGCCATCTCTACAGCTTGGTGGAAATTTCTTGACGTGAGCTGGATCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 90 bp | AGGATATTTAAAGGGAAGAATGCAAGACAAAGAAAACGTCACCACTaGTGCCTCAGAGAGGTCCAGGCTCACATTGATCGTAAAGTACAC | + |
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Preference number: 5 (lower is better) Translates to: RIFKGKNARQRKRHH*CLREVQAHIDRKVH Trigger: GTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGCAGTGGTGACGTTTTCTTTGTCTTGCATTCTTCCCTTTAAATATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS-3UTR CAA 90 bp | CATTTCAGCCATATTAATTTTCTTCTTGTGACCCCAACCCTAGTACATCCTAGAATGATCGCCCCTCCATaGTCCTCTTCTCAATACAAT | + |
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Preference number: 5 (lower is better) Translates to: HFSHINFLLVTPTLVHPRMIAPP*SSSQYN Trigger: ATTGTATTGAGAAGAGGACAATGGAGGGGCGATCAT...TCTAGGATGTACTAGGGTTGGGGTCACAAGAAGAAAATTAATATGGCTGAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CAA 72 bp | CCTCGTGAAAGCGAGATCCTCTGGCTGGGCTGTGCTTaGCCTGGCGGGGGAGGGCAAAGCTTCTATGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: PRESEILWLGCA*PGGGGQSFYVD Trigger: GTCAACATAGAAGCTTTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCCAGAGGATCTCGCTTTCACGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 72 bp | CTCGTGAAAGCGAGATCCTCTGGCTGGGCTGTGCTTTaGCTGGCGGGGGAGGGCAAAGCTTCTATGTTGACA | + |
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Preference number: 6 (lower is better) Translates to: LVKARSSGWAVL*LAGEGKASMLT Trigger: TGTCAACATAGAAGCTTTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCCAGAGGATCTCGCTTTCACGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CAA 90 bp | GATCCAGAGCCTCGTGAAAGCGAGATCCTCTGGCTGGGCTGTGCTTaGCCTGGCGGGGGAGGGCAAAGCTTCTATGTTGACATAGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: DPEPRESEILWLGCA*PGGGGQSFYVDIVK Trigger: TTTGACTATGTCAACATAGAAGCTTTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCCAGAGGATCTCGCTTTCACGAGGCTCTGGATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CAA 72 bp | GTCACCACTGCTGCCTCAGAGAGGTCCAGGCTCACATaGATCGTAAAGTACACTTGCGATGATCGCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: VTTAASERSRLT*IVKYTCDDRPS Trigger: GGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGCAGTGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CAA 90 bp | AAAGAAAACGTCACCACTGCTGCCTCAGAGAGGTCCAGGCTCACATaGATCGTAAAGTACACTTGCGATGATCGCCCCTCCATTGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: KENVTTAASERSRLT*IVKYTCDDRPSIVL Trigger: GAGGACAATGGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGCAGTGGTGACGTTTTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS TCA 72 bp | GTTCAGCTGAGTCTGCTGGGATCTACTCAGCGATACTaGTCTCACTGTAATTTCGGGCAGGACTGTAGGATA | + |
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Preference number: 6 (lower is better) Translates to: VQLSLLGSTQRY*SHCNFGQDCRI Trigger: TATCCTACAGTCCTGCCCGAAATTACAGTGAGATCAGTATCGCTGAGTAGATCCCAGCAGACTCAGCTGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 72 bp | AAAGGGAAGAATGCAAGACAAAGAAAACGTCACCACTaGTGCCTCAGAGAGGTCCAGGCTCACATTGATCGT | + |
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Preference number: 6 (lower is better) Translates to: KGKNARQRKRHH*CLREVQAHIDR Trigger: ACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGCAGTGGTGACGTTTTCTTTGTCTTGCATTCTTCCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS TCA 72 bp | GTCCAGGCTCACATTGATCGTAAAGTACACTTGCGATaGTCGCCCCTCCATTGTCCTCTTCTCAATACAATC | + |
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Preference number: 6 (lower is better) Translates to: VQAHIDRKVHLR*SPLHCPLLNTI Trigger: GATTGTATTGAGAAGAGGACAATGGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS CCA 72 bp | TTCTCAATACAATCTTTCAGCTCCGCCAATGCCAGCTaGTCATTCACTATGAGCTCATTCTCACTGGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: FSIQSFSSANAS*SFTMSSFSLGN Trigger: GTTCCCCAGTGAGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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| CDS GCA 72 bp | TGTCCTCTTCTCAATACAATCTTTCAGCTCCGCCAATaGCAGCTGGTCATTCACTATGAGCTCATTCTCACT | + |
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Preference number: 6 (lower is better) Translates to: CPLLNTIFQLRQ*QLVIHYELILT Trigger: AGTGAGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTGAGAAGAGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039101.12 |
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