Pregenerated sensors for RWDD2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032417Ensembl transcript IDs: ENSMUST00000034988.10, ENSMUST00000179212.3, ENSMUST00000185566.7
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTACACAGCAACCTGGAAACAGCATCACAGTTACACTaGTACAAAGTTAAAGGGCCTATTAGCATCAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: LHSNLETASQLH*YKVKGPISISS Trigger: ACTGCTGATGCTAATAGGCCCTTTAACTTTGTACCAGTGTAACTGTGATGCTGTTTCCAGGTTGCTGTGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034988.10 |
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| CDS-3UTR GCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGATGCGCTGTTGTCCTaGAGCCACTGGATGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLDALLS*SHWMAA Trigger: TGCAGCCATCCAGTGGCTGCAGGACAACAGCGCATC...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTAAATTCGATGTTGGGTaGGAGCGCCTCCCTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFKFDVG*ERLPGA Trigger: GGCACCAGGGAGGCGCTCCCACCCAACATCGAATTT...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAAAATTCGATGTTGGGTaGGAGCGCCTCCCTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLKFDVG*ERLPGA Trigger: GGCACCAGGGAGGCGCTCCCACCCAACATCGAATTT...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATCCTGCAGCCACTGGATaGCTGCACAGACACACAACT | + |
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Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHPAATG*LHRHTT Trigger: AGTTGTGTGTCTGTGCAGCCATCCAGTGGCTGCAGG...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTTCTGTCAAGCTCAGGTaGCCGTCCAAACAGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFSVKLR*PSKQLQ Trigger: CTGCAGCTGTTTGGACGGTCACCTGAGCTTGACAGA...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTATCTGTCAAGCTCAGGTaGCCGTCCAAACAGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLSVKLR*PSKQLQ Trigger: CTGCAGCTGTTTGGACGGTCACCTGAGCTTGACAGA...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTGGAGGAATGTGTTCTTaGCTGGCTTCGCCTGTACGG | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFGGMCS*LASPVR Trigger: CCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCC...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGGAGCGCCTCCCTGGTaGCTTCCAGATACCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLGAPPW*LPDTSL Trigger: TAAAGAGGTATCTGGAAGGCACCAGGGAGGCGCTCC...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTGGAGCGCCTCCCTGGTaGCTTCCAGATACCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFGAPPW*LPDTSL Trigger: TAAAGAGGTATCTGGAAGGCACCAGGGAGGCGCTCC...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | ATTTATAATGAAATGGTAATCAAGTGTGACTTTACACAGCAACCTGGAAACAGCCAGCCACTGGATGGCTaGACAGACACACAACTCACC | + |
|
Preference number: 4 (lower is better) Translates to: IYNEMVIKCDFTQQPGNSQPLDG*TDTQLT Trigger: GGTGAGTTGTGTGTCTGTGCAGCCATCCAGTGGCTG...GCTGTTTCCAGGTTGCTGTGTAAAGTCACACTTGATTACCATTTCATTATAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034988.10 |
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| CDS-3UTR GCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTACAGCCACTGGATGGCTaGACAGACACACAACTCACC | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLQPLDG*TDTQLT Trigger: GGTGAGTTGTGTGTCTGTGCAGCCATCCAGTGGCTG...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTCCTGCAGCCACTGGATaGCTGCACAGACACACAACT | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFPAATG*LHRHTT Trigger: AGTTGTGTGTCTGTGCAGCCATCCAGTGGCTGCAGG...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATGAATGTGTTCTTGACTaGCTTCGCCTGTACGGATGG | + |
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Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHECVLD*LRLYGW Trigger: CCATCCGTACAGGCGAAGCCAGTCAAGAACACATTC...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATCAGAATTCCTCACAGTaGTTCTTGAAGCCCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHQNSSQ*FLKPST Trigger: TGTGGAGGGCTTCAAGAATCACTGTGAGGAATTCTG...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | ATTTATAATGAAATGGTAATCAAGTGTGACTTTACACAGCAACCTGGAAACAGCGAATGTGTTCTTGACTaGCTTCGCCTGTACGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: IYNEMVIKCDFTQQPGNSECVLD*LRLYGW Trigger: CCATCCGTACAGGCGAAGCCAGTCAAGAACACATTC...GCTGTTTCCAGGTTGCTGTGTAAAGTCACACTTGATTACCATTTCATTATAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034988.10 |
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| CDS-3UTR TCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTACCTCACAGTGATTCTTaGAGCCCTCCACACAGATTA | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLPHSDS*SPPHRL Trigger: TAATCTGTGTGGAGGGCTTCAAGAATCACTGTGAGG...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTCCTCACAGTGATTCTTaGAGCCCTCCACACAGATTA | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFPHSDS*SPPHRL Trigger: TAATCTGTGTGGAGGGCTTCAAGAATCACTGTGAGG...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTCCAATTGGGGTATCTaGTTGTGTGCCAGAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHSNWGI*LCARIP Trigger: AGGAATTCTGGCACACAATCAGATACCCCAATTGGA...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATAATTCCTCAAACGAATaGAAGAGGCGCAGGTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHNSSNE*KRRRSS Trigger: TGAAGACCTGCGCCTCTTCCATTCGTTTGAGGAATT...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR TCA 90 bp | ATTTATAATGAAATGGTAATCAAGTGTGACTTTACACAGCAACCTGGAAACAGCTCCAATTGGGGTATCTaGTTGTGTGCCAGAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: IYNEMVIKCDFTQQPGNSSNWGI*LCARIP Trigger: AGGAATTCTGGCACACAATCAGATACCCCAATTGGA...GCTGTTTCCAGGTTGCTGTGTAAAGTCACACTTGATTACCATTTCATTATAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034988.10 |
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| CDS-3UTR CCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTAATTCCTCAAACGAATaGAAGAGGCGCAGGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFNSSNE*KRRRSS Trigger: TGAAGACCTGCGCCTCTTCCATTCGTTTGAGGAATT...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTCAGGCTTTCCTGTCATaGAAAATCCAGTCACATCTA | + |
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Preference number: 4 (lower is better) Translates to: GNSRARFFTQNSILSLAFQAFLS*KIQSHL Trigger: TAGATGTGACTGGATTTTGCATGACAGGAAAGCCTG...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATCACTTTCTGCATGCTTaGAGGAAATGTGTTTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: SSQEILELGFSPRILYCHHFLHA*RKCVSN Trigger: ATTGGAAACACATTTCCTGCAAGCATGCAGAAAGTG...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTATCCACACTTTCTGCATaGTTGCAGGAAATGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLSTLSA*LQEMCF Trigger: GAAACACATTTCCTGCAAGCATGCAGAAAGTGTGGA...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGGTAGTTGTGAGGCATaGTTACTTGCAAATCAATGG | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLGSCEA*LLANQW Trigger: CCATTGATTTGCAAGTAACCATGCCTCACAACTACC...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR GCA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTACACTTTCTGCATGCTTaGAGGAAATGTGTTTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: QSGNSRARFFTQNSILSLHFLHA*RKCVSN Trigger: ATTGGAAACACATTTCCTGCAAGCATGCAGAAAGTG...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS GCA 90 bp | GGTGAGGAAGTAGGATGCGCTGTTGTCCTGCAGCCACTGGATGGCTaGACAGACACACAACTCACCTGGGTCGAAAGTCCCGAGATAAGC | + |
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Preference number: 5 (lower is better) Translates to: GEEVGCAVVLQPLDG*TDTQLTWVESPEIS Trigger: GCTTATCTCGGGACTTTCGACCCAGGTGAGTTGTGTGTCTGTGCAGCCATCCAGTGGCTGCAGGACAACAGCGCATCCTACTTCCTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 90 bp | CCACATGCGGAGGAATGTGTTCTTGACTGGCTTCGCCTGTACGGATaGCTCGTCCGACAGCTTTCTGGTGAGGAAGTAGGATGCGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: PHAEECVLDWLRLYG*LVRQLSGEEVGCAV Trigger: AACAGCGCATCCTACTTCCTCACCAGAAAGCTGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCGCATGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS TCA 90 bp | GAGAGCTTGGTTAAGCAGCAGCTGCTGTTGTCTGTCAAGCTCAGGTaGCCGTCCAAACAGCTGCAGAGCCACGTATGGGTAGTTGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ESLVKQQLLLSVKLR*PSKQLQSHVWVVVR Trigger: CCTCACAACTACCCATACGTGGCTCTGCAGCTGTTTGGACGGTCACCTGAGCTTGACAGACAACAGCAGCTGCTGCTTAACCAAGCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 90 bp | TATGTGGTGGCTATAGATCCACATGCGGAGGAATGTGTTCTTGACTaGCTTCGCCTGTACGGATGGCTCGTCCGACAGCTTTCTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: YVVAIDPHAEECVLD*LRLYGWLVRQLSGE Trigger: CTCACCAGAAAGCTGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCGCATGTGGATCTATAGCCACCACATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS TCA 90 bp | GATATATGTGGTGGCTATAGATCCACATGCGGAGGAATGTGTTCTTaGCTGGCTTCGCCTGTACGGATGGCTCGTCCGACAGCTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: DICGGYRSTCGGMCS*LASPVRMARPTAFW Trigger: CCAGAAAGCTGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCGCATGTGGATCTATAGCCACCACATATATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 90 bp | CTTGGGCTCCTCAATTTGGAGCGTGATGACAAATTCGATGTTGGGTaGGAGCGCCTCCCTGGTGCCTTCCAGATACCTCTTTATGTTTGT | + |
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Preference number: 5 (lower is better) Translates to: LGLLNLERDDKFDVG*ERLPGAFQIPLYVC Trigger: ACAAACATAAAGAGGTATCTGGAAGGCACCAGGGAGGCGCTCCCACCCAACATCGAATTTGTCATCACGCTCCAAATTGAGGAGCCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 90 bp | ACCGTCCAAACAGCTGCAGAGCCACGTATGGGTAGTTGTGAGGCATaGTTACTTGCAAATCAATGGTCACCTTGGGCTCCTCAATTTGGA | + |
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Preference number: 5 (lower is better) Translates to: TVQTAAEPRMGSCEA*LLANQWSPWAPQFG Trigger: TCCAAATTGAGGAGCCCAAGGTGACCATTGATTTGCAAGTAACCATGCCTCACAACTACCCATACGTGGCTCTGCAGCTGTTTGGACGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS-3UTR CAA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATATGACAAATTCGATGTaGGGTGGGAGCGCCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: SSQEILELGFSPRILYCHMTNSM*GGSASL Trigger: CAGGGAGGCGCTCCCACCCAACATCGAATTTGTCAT...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATCGGAGGAATGTGTTCTaGACTGGCTTCGCCTGTACG | + |
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Preference number: 5 (lower is better) Translates to: SSQEILELGFSPRILYCHRRNVF*TGFACT Trigger: CGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCG...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAATGACAAATTCGATGTaGGGTGGGAGCGCCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: QSGNSRARFFTQNSILSLMTNSM*GGSASL Trigger: CAGGGAGGCGCTCCCACCCAACATCGAATTTGTCAT...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTCGGAGGAATGTGTTCTaGACTGGCTTCGCCTGTACG | + |
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Preference number: 5 (lower is better) Translates to: GNSRARFFTQNSILSLAFRRNVF*TGFACT Trigger: CGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCG...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATGTGAGGCATGGTTACTaGCAAATCAATGGTCACCTT | + |
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Preference number: 5 (lower is better) Translates to: SSQEILELGFSPRILYCHVRHGY*QINGHL Trigger: AAGGTGACCATTGATTTGCAAGTAACCATGCCTCAC...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | ATTTATAATGAAATGGTAATCAAGTGTGACTTTACACAGCAACCTGGAAACAGCGTGAGGCATGGTTACTaGCAAATCAATGGTCACCTT | + |
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Preference number: 5 (lower is better) Translates to: IYNEMVIKCDFTQQPGNSVRHGY*QINGHL Trigger: AAGGTGACCATTGATTTGCAAGTAACCATGCCTCAC...GCTGTTTCCAGGTTGCTGTGTAAAGTCACACTTGATTACCATTTCATTATAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034988.10 |
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| CDS-3UTR CAA 90 bp | AGCAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATACACTTTCTGCATGCTaGCAGGAAATGTGTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: SSQEILELGFSPRILYCHTLSAC*QEMCFQ Trigger: TTGGAAACACATTTCCTGCAAGCATGCAGAAAGTGT...ATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTACACTTTCTGCATGCTaGCAGGAAATGTGTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GNSRARFFTQNSILSLAFTLSAC*QEMCFQ Trigger: TTGGAAACACATTTCCTGCAAGCATGCAGAAAGTGT...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | GGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGCCTTTAAAACATGCTCACTCTaGTGTTTTCTCAGAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: GNSRARFFTQNSILSLAFKTCSL*CFLRNS Trigger: GGAGTTTCTGAGAAAACACAAGAGTGAGCATGTTTT...AAAGGCTAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAAAAACATGCTCACTCTaGTGTTTTCTCAGAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: QSGNSRARFFTQNSILSLKTCSL*CFLRNS Trigger: GGAGTTTCTGAGAAAACACAAGAGTGAGCATGTTTT...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS-3UTR CAA 90 bp | CAGTCAGGAAATTCTAGAGCTAGGTTTTTCACCCAGAATTCTATATTGTCATTAGATACCTCTTTATGTTaGTTAGGGCGTTTACATCTT | + |
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Preference number: 5 (lower is better) Translates to: QSGNSRARFFTQNSILSLDTSLC*LGRLHL Trigger: AAGATGTAAACGCCCTAACAAACATAAAGAGGTATC...TAATGACAATATAGAATTCTGGGTGAAAAACCTAGCTCTAGAATTTCCTGACTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 |
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| CDS TCA 72 bp | TCGCCTGTACGGATGGCTCGTCCGACAGCTTTCTGGTaGGGAAGTAGGATGCGCTGTTGTCCTGCAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: SPVRMARPTAFW*GSRMRCCPAAT Trigger: AGTGGCTGCAGGACAACAGCGCATCCTACTTCCTCACCAGAAAGCTGTCGGACGAGCCATCCGTACAGGCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS GCA 72 bp | GTAGGATGCGCTGTTGTCCTGCAGCCACTGGATGGCTaGACAGACACACAACTCACCTGGGTCGAAAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VGCAVVLQPLDG*TDTQLTWVESP Trigger: GGGACTTTCGACCCAGGTGAGTTGTGTGTCTGTGCAGCCATCCAGTGGCTGCAGGACAACAGCGCATCCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS GCA 72 bp | TGGCTCGTCCGACAGCTTTCTGGTGAGGAAGTAGGATaGGCTGTTGTCCTGCAGCCACTGGATGGCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: WLVRQLSGEEVG*AVVLQPLDGCT Trigger: TGTGCAGCCATCCAGTGGCTGCAGGACAACAGCGCATCCTACTTCCTCACCAGAAAGCTGTCGGACGAGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS TCA 72 bp | GGTGGCTATAGATCCACATGCGGAGGAATGTGTTCTTaGCTGGCTTCGCCTGTACGGATGGCTCGTCCGACA | + |
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Preference number: 6 (lower is better) Translates to: GGYRSTCGGMCS*LASPVRMARPT Trigger: TGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCGCATGTGGATCTATAGCCACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | TCACCATGGGCCTCAAGGAGTAATTCCTCAAACGAATaGAAGAGGCGCAGGTCTTCACCGTCCCCCTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SPWASRSNSSNE*KRRRSSPSPSV Trigger: GACAGAGGGGGACGGTGAAGACCTGCGCCTCTTCCATTCGTTTGAGGAATTACTCCTTGAGGCCCATGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS TCA 72 bp | GTTAAGCAGCAGCTGCTGTTGTCTGTCAAGCTCAGGTaGCCGTCCAAACAGCTGCAGAGCCACGTATGGGTA | + |
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Preference number: 6 (lower is better) Translates to: VKQQLLLSVKLR*PSKQLQSHVWV Trigger: TACCCATACGTGGCTCTGCAGCTGTTTGGACGGTCACCTGAGCTTGACAGACAACAGCAGCTGCTGCTTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | GAGGAATGTGTTCTTGACTGGCTTCGCCTGTACGGATaGCTCGTCCGACAGCTTTCTGGTGAGGAAGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: EECVLDWLRLYG*LVRQLSGEEVG Trigger: TCCTACTTCCTCACCAGAAAGCTGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | GCTATAGATCCACATGCGGAGGAATGTGTTCTTGACTaGCTTCGCCTGTACGGATGGCTCGTCCGACAGCTT | + |
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Preference number: 6 (lower is better) Translates to: AIDPHAEECVLD*LRLYGWLVRQL Trigger: AAGCTGTCGGACGAGCCATCCGTACAGGCGAAGCCAGTCAAGAACACATTCCTCCGCATGTGGATCTATAGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 90 bp | GTCACCTTGGGCTCCTCAATTTGGAGCGTGATGACAAATTCGATGTaGGGTGGGAGCGCCTCCCTGGTGCCTTCCAGATACCTCTTTATG | + |
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Preference number: 6 (lower is better) Translates to: VTLGSSIWSVMTNSM*GGSASLVPSRYLFM Trigger: CATAAAGAGGTATCTGGAAGGCACCAGGGAGGCGCTCCCACCCAACATCGAATTTGTCATCACGCTCCAAATTGAGGAGCCCAAGGTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | CTCAATTTGGAGCGTGATGACAAATTCGATGTTGGGTaGGAGCGCCTCCCTGGTGCCTTCCAGATACCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LNLERDDKFDVG*ERLPGAFQIPL Trigger: AAGAGGTATCTGGAAGGCACCAGGGAGGCGCTCCCACCCAACATCGAATTTGTCATCACGCTCCAAATTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | ACAGCTGCAGAGCCACGTATGGGTAGTTGTGAGGCATaGTTACTTGCAAATCAATGGTCACCTTGGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: TAAEPRMGSCEA*LLANQWSPWAP Trigger: AGGAGCCCAAGGTGACCATTGATTTGCAAGTAACCATGCCTCACAACTACCCATACGTGGCTCTGCAGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 90 bp | AAACAGCTGCAGAGCCACGTATGGGTAGTTGTGAGGCATGGTTACTaGCAAATCAATGGTCACCTTGGGCTCCTCAATTTGGAGCGTGAT | + |
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Preference number: 6 (lower is better) Translates to: KQLQSHVWVVVRHGY*QINGHLGLLNLERD Trigger: ATCACGCTCCAAATTGAGGAGCCCAAGGTGACCATTGATTTGCAAGTAACCATGCCTCACAACTACCCATACGTGGCTCTGCAGCTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CCA 72 bp | ACTTGCAAATCAATGGTCACCTTGGGCTCCTCAATTTaGAGCGTGATGACAAATTCGATGTTGGGTGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: TCKSMVTLGSSI*SVMTNSMLGGS Trigger: GCTCCCACCCAACATCGAATTTGTCATCACGCTCCAAATTGAGGAGCCCAAGGTGACCATTGATTTGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 72 bp | CAGAGCCACGTATGGGTAGTTGTGAGGCATGGTTACTaGCAAATCAATGGTCACCTTGGGCTCCTCAATTTG | + |
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Preference number: 6 (lower is better) Translates to: QSHVWVVVRHGY*QINGHLGLLNL Trigger: CAAATTGAGGAGCCCAAGGTGACCATTGATTTGCAAGTAACCATGCCTCACAACTACCCATACGTGGCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 72 bp | GCGCCTCCCTGGTGCCTTCCAGATACCTCTTTATGTTaGTTAGGGCGTTTACATCTTCGAGTTTTACTTCTC | + |
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Preference number: 6 (lower is better) Translates to: APPWCLPDTSLC*LGRLHLRVLLL Trigger: GAGAAGTAAAACTCGAAGATGTAAACGCCCTAACAAACATAAAGAGGTATCTGGAAGGCACCAGGGAGGCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 72 bp | TACTTGCAAATCAATGGTCACCTTGGGCTCCTCAATTaGGAGCGTGATGACAAATTCGATGTTGGGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: YLQINGHLGLLN*ERDDKFDVGWE Trigger: CTCCCACCCAACATCGAATTTGTCATCACGCTCCAAATTGAGGAGCCCAAGGTGACCATTGATTTGCAAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS CAA 90 bp | CTGAAAAACATGCTCACTCTTGTGTTTTCTCAGAAACTCCAGGAATaGGCCCAGGTTCATGTGATAATCATTCCGCAATCCATAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: LKNMLTLVFSQKLQE*AQVHVIIIPQSIVT Trigger: GGTGACTATGGATTGCGGAATGATTATCACATGAACCTGGGCCAATTCCTGGAGTTTCTGAGAAAACACAAGAGTGAGCATGTTTTTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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| CDS TCA 72 bp | GTTAGGGCGTTTACATCTTCGAGTTTTACTTCTCCTTaGTTAGGAAACATAGAAAACAGCATTTCCATCTCC | + |
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Preference number: 6 (lower is better) Translates to: VRAFTSSSFTSP*LGNIENSISIS Trigger: GGAGATGGAAATGCTGTTTTCTATGTTTCCTAATCAAGGAGAAGTAAAACTCGAAGATGTAAACGCCCTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034988.10 ENSMUST00000179212.3 ENSMUST00000185566.7 |
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