RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RUNX2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039153

Ensembl transcript IDs: ENSMUST00000113568.8, ENSMUST00000113571.10, ENSMUST00000113572.9, ENSMUST00000159943.8, ENSMUST00000160199.2, ENSMUST00000160672.2, ENSMUST00000160673.8, ENSMUST00000162130.8, ENSMUST00000162373.8, ENSMUST00000162629.8, ENSMUST00000162816.8, ENSMUST00000162878.8, ENSMUST00000238400.2

Found 653 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGCCGCTCATGATCCTTGCCTCGGACACCAGGGGACGTGGCAGTaGGGCAGCTGGGCATCCAGTCAACAAGGTGGGGTGCAGCCTCTG +
Preference number: 1 (lower is better)
Translates to: VAAHDPCLGHQGTWQ*GSWASSQQGGVQPL
Trigger: CAGAGGCTGCACCCCACCTTGTTGACTGGATGCCCAGCTGCCCCACTGCCACGTCCCCTGGTGTCCGAGGCAAGGATCATGAGCGGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR TCA 90 bp CAGAGGTGGCAGTGTCATCATCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGG +
Preference number: 1 (lower is better)
Translates to: QRWQCHHLKYAWARQ*WQVARCPVWKTAAW
Trigger: CCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGATGATGACACTGCCACCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR TCA 90 bp GTACGTGTGGTAGTGAGTGGTGGCGGACATGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTAGGTAAAGGTGGCTGGGTAGTGCAT +
Preference number: 1 (lower is better)
Translates to: VRVVVSGGGHAEGHA*RDWRGVGKGGWVVH
Trigger: ATGCACTACCCAGCCACCTTTACCTACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTCACTACCACACGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR TCA 90 bp GTGCTGGGTTCTGAATCCCGGGGAGTCCATCTGCAGCGGAAAATGTaGAGGCTCTGGGACCAGAGAGCCCTTTCCTGCTACTCGCTTGAG +
Preference number: 1 (lower is better)
Translates to: VLGSESRGVHLQRKM*RLWDQRALSCYSLE
Trigger: CTCAAGCGAGTAGCAGGAAAGGGCTCTCTGGTCCCAGAGCCTTCACATTTTCCGCTGCAGATGGACTCCCCGGGATTCAGAACCCAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 90 bp CCTCTGAGGACAGGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTaGTGGGTTCTGAATCCCGGGGAGTCCATCTGCAGCGGAAAATGT +
Preference number: 1 (lower is better)
Translates to: PLRTGTGWWKTVSPR*WVLNPGESICSGKC
Trigger: ACATTTTCCGCTGCAGATGGACTCCCCGGGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 90 bp TGCACCACATCTGACTCTGTAAGCGGGTCTGCAGAGTGTACCGGCTaGCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTG +
Preference number: 1 (lower is better)
Translates to: CTTSDSVSGSAECTG*HTAEAVVSKHREEV
Trigger: CACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCAGACCCGCTTACAGAGTCAGATGTGGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 90 bp TGCAGCAAGTCTGAAGGAAAACTTTGGAACAGGTGGACGGCAGAGTaGACGGCAGCGGACAGAAGCAGCCACTCTGCCTCTTGTCCCTTT +
Preference number: 1 (lower is better)
Translates to: CSKSEGKLWNRWTAE*TAADRSSHSASCPF
Trigger: AAAGGGACAAGAGGCAGAGTGGCTGCTTCTGTCCGCTGCCGTCCACTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGACTTGCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 90 bp CAAATGAGTACCTGCAGCAAGTCTGAAGGAAAACTTTGGAACAGGTaGACGGCAGAGTGGACGGCAGCGGACAGAAGCAGCCACTCTGCC +
Preference number: 1 (lower is better)
Translates to: QMSTCSKSEGKLWNR*TAEWTAADRSSHSA
Trigger: GGCAGAGTGGCTGCTTCTGTCCGCTGCCGTCCACTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTACTCATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 90 bp CCTGGGATCTGTAATCTGACTCTGTCCTTGTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGGCCGTGGGTTCTGAGGCGGGACACC +
Preference number: 1 (lower is better)
Translates to: PGICNLTLSLWIKRT*CRVQGGPWVLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAGATTACAGATCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 90 bp GGGATCTGTAATCTGACTCTGTCCTTGTGGATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCGTGGGTTCTGAGGCGGGACACCTAC +
Preference number: 1 (lower is better)
Translates to: GICNLTLSLWIKRTW*RVQGGPWVLRRDTY
Trigger: GTAGGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAGATTACAGATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 90 bp GATAGGATGCTGACGAAGTACCATAGTAGAGATATGGAGTGCTGCTaGTCTGGAAGGGTCCACTCTGGCTTTGGGAAGAGCCGGGGTAGG +
Preference number: 1 (lower is better)
Translates to: DRMLTKYHSRDMECC*SGRVHSGFGKSRGR
Trigger: CCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR TCA 90 bp TTTGTGCAGGAGGAATGCTGGGATTGGCCTGGTGGTATCACTGAATaGTCCCTGGCCTGGATTAGGAAGCCACACTTAGGGATTGGCCCT +
Preference number: 1 (lower is better)
Translates to: FVQEECWDWPGGITE*SLAWIRKPHLGIGP
Trigger: AGGGCCAATCCCTAAGTGTGGCTTCCTAATCCAGGCCAGGGATCATTCAGTGATACCACCAGGCCAATCCCAGCATTCCTCCTGCACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR TCA 90 bp AGGAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAGATATGGAGTGCTGCTGGTCTGGAA +
Preference number: 1 (lower is better)
Translates to: RRPVSPGYHWELIGC*RSTIVEIWSAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 90 bp ACTGATAGGATGCTGACGAAGTACCATAGTAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCACTCTGGCTTTGGGAAGAGCCGGGGT +
Preference number: 1 (lower is better)
Translates to: TDRMLTKYHSRDMEC*WSGRVHSGFGKSRG
Trigger: ACCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCTATCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 90 bp GGAACTGATAGGATGCTGACGAAGTACCATAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTCCACTCTGGCTTTGGGAAGAGCCGG +
Preference number: 1 (lower is better)
Translates to: GTDRMLTKYHSRDME*CWSGRVHSGFGKSR
Trigger: CCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCTATCAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 90 bp TCCTTGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACCTACTCTCATACTGGGATGAGGAAT +
Preference number: 1 (lower is better)
Translates to: SLWIKRTWCRVQGGP*VLRRDTYSHTGMRN
Trigger: ATTCCTCATCCCAGTATGAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 90 bp GGTACCCTCAGCATCCCTTTGTTTAGAAGATCCAGCTCTTTTAATTaGCATCTGGTGCTTCAGGCACAGGCTGAGACTGGGGCACCAGAG +
Preference number: 1 (lower is better)
Translates to: GTLSIPLFRRSSSFN*HLVLQAQAETGAPE
Trigger: CTCTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGCACCAGATGCCAATTAAAAGAGCTGGATCTTCTAAACAAAGGGATGCTGAGGGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 90 bp GACTTTAAGAAGAGATATGTGAAGTCCACTGGAGTCCACTGGAGGTaGACACACCATCAGCATCTCAAGAAAGGGATGCTGGAGGGGCCC +
Preference number: 1 (lower is better)
Translates to: DFKKRYVKSTGVHWR*THHQHLKKGMLEGP
Trigger: GGGCCCCTCCAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATATCTCTTCTTAAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 90 bp AGAGAAGAGGCCAATTTAGTGAGGGCCTTTGCTATGATGTCCAGATaGCCATTCATTGTCCGTAGCTCCACCAGGATGTCCCCAACACTG +
Preference number: 1 (lower is better)
Translates to: REEANLVRAFAMMSR*PFIVRSSTRMSPTL
Trigger: CAGTGTTGGGGACATCCTGGTGGAGCTACGGACAATGAATGGCCATCTGGACATCATAGCAAAGGCCCTCACTAAATTGGCCTCTTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 90 bp AAGGAACAGAGAGCGAGGGGGTATAGGGTGCTGAAGGCAAAAGCTTaGAGAACTCTTAGAATGACTCAGGATTCAAATGAAGGTGGCCCC +
Preference number: 1 (lower is better)
Translates to: KEQRARGYRVLKAKA*RTLRMTQDSNEGGP
Trigger: GGGGCCACCTTCATTTGAATCCTGAGTCATTCTAAGAGTTCTGCAAGCTTTTGCCTTCAGCACCCTATACCCCCTCGCTCTCTGTTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR TCA 90 bp CATCCAATGTGTGAGCAAACCAAGCTAAGTAACTGGCTCTTCTGCTaGTTTTGCTTGTCTCCAGCAAAGACGGGATCAGAGGAGTCAGCG +
Preference number: 1 (lower is better)
Translates to: HPMCEQTKLSNWLFC*FCLSPAKTGSEESA
Trigger: CGCTGACTCCTCTGATCCCGTCTTTGCTGGAGACAAGCAAAATCAGCAGAAGAGCCAGTTACTTAGCTTGGTTTGCTCACACATTGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
3UTR GCA 90 bp AAACTCACACACAATGGCAGATACCAATGGGTACATGGCCTTCCCTaGTCTTGTTGGCCCTGCCTAATGAAAGCCTCCAATGTCAAAGGT +
Preference number: 1 (lower is better)
Translates to: KLTHNGRYQWVHGLP*SCWPCLMKASNVKG
Trigger: ACCTTTGACATTGGAGGCTTTCATTAGGCAGGGCCAACAAGAGCAGGGAAGGCCATGTACCCATTGGTATCTGCCATTGTGTGTGAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR GCA 90 bp CGATCAGAGAACAAACTAGGTTTAGAGTCATCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCT +
Preference number: 1 (lower is better)
Translates to: RSENKLGLESSSFCL*LLGSRGPSTVTLIA
Trigger: AGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGATGACTCTAAACCTAGTTTGTTCTCTGATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 90 bp ATAAATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTaGGCTGACCATCTGCGTCTACTTGGTGCACAGCCTTTAGAAGGC +
Preference number: 1 (lower is better)
Translates to: INSISYNFHLKETQR*ADHLRLLGAQPLEG
Trigger: GCCTTCTAAAGGCTGTGCACCAAGTAGACGCAGATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTATTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 90 bp AGTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTaGCACAAAGCACAATTTGTACAATACGTGCATAGAAAGCAAATC +
Preference number: 1 (lower is better)
Translates to: SPFEVQSKLIHDHDL*HKAQFVQYVHRKQI
Trigger: GATTTGCTTTCTATGCACGTATTGTACAAATTGTGCTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR TCA 90 bp GAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTAGCCCACTaGAGAAACTTGGTATTGAAGAAGAAGCACACTTTTAGAGACCGA +
Preference number: 1 (lower is better)
Translates to: ELRLLSNISDMALAH*RNLVLKKKHTFRDR
Trigger: TCGGTCTCTAAAAGTGTGCTTCTTCTTCAATACCAAGTTTCTTCAGTGGGCTAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR GCA 90 bp TCCACGATCATGACCTGTGGCACAAAGCACAATTTGTACAATACGTaGATAGAAAGCAAATCTTGGGCAATAGCAATCAGAAAAATAAAA +
Preference number: 1 (lower is better)
Translates to: STIMTCGTKHNLYNT*IESKSWAIAIRKIK
Trigger: TTTTATTTTTCTGATTGCTATTGCCCAAGATTTGCTTTCTATGCACGTATTGTACAAATTGTGCTTTGTGCCACAGGTCATGATCGTGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGCAGGGGACGTGGCAGTaGGGCAGCTGGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLQGTWQ*GSWASS
Trigger: ACTGGATGCCCAGCTGCCCCACTGCCACGTCCCCTG...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GGACCATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 2 (lower is better)
Translates to: GPSWKETGLPRVPLGTDRVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...CCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATGGTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR GCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTGGGATGTGGCCCCCATaGCACTGGGCCATGGTTGAC +
Preference number: 2 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTGMWPP*HWAMVD
Trigger: GTCAACCATGGCCCAGTGGCATGGGGGCCACATCCC...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR-3UTR CCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGGTGGGGTGCAGCCTCTaGGGAGGAGGTCACAATGGT +
Preference number: 2 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLVGCSL*GGGHNG
Trigger: ACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCAC...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGGGATGTCCCCAACACTaGCCTCCAAGGTGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLGCPQH*PPRWQQ
Trigger: CTGCTGCCACCTTGGAGGCCAGTGTTGGGGACATCC...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGCCAGGATGTTCAGCATaGTCATCCCTGGCAGGGCCT +
Preference number: 2 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLPGCSA*SSLAGP
Trigger: AGGCCCTGCCAGGGATGATCATGCTGAACATCCTGG...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR GCA 90 bp ATGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGGTGGAGTGGATGTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 2 (lower is better)
Translates to: MAGSPVPRVEDSGVVEWMSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...CATCCACTCCACCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR GCA 90 bp GGTAAAGGTGGCTGGGTAGTGCATTCGTGGGTTGGAGAAGCGGCTCTCAGTGAGTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 2 (lower is better)
Translates to: GKGGWVVHSWVGEAALSEWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...CTCACTGAGAGCCGCTTCTCCAACCCACGAATGCACTACCCAGCCACCTTTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGGGCCATCATGGTCTGTaGCCGCTCATGATCCTTGCC +
Preference number: 2 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLGHHGL*PLMILA
Trigger: GGCAAGGATCATGAGCGGCCACAGACCATGATGGCC...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp AGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCTCTCCCGGGCCGGGGCCATCATaGTCTGTGGCCGCTCATGAT +
Preference number: 2 (lower is better)
Translates to: RDAGGAPESVSDDRTSSPGPGPS*SVAAHD
Trigger: ATCATGAGCGGCCACAGACCATGATGGCCCCGGCCC...GGGAGAGGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp GTAGAGGGGCCAGGCTCCTCTGAGGACAGGAACAGGGTGGTGGAAGACTGTGAGCAAGGTGCTGGGTTCTaGATCCCGGGGAGTCCATCT +
Preference number: 2 (lower is better)
Translates to: VEGPGSSEDRNRVVEDCEQGAGF*IPGSPS
Trigger: AGATGGACTCCCCGGGATTCAGAACCCAGCACCTTG...CTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCCTCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR GCA 90 bp TTTAATTGGCATCTGGTGCTTCAGGCACAGGCTGAGACTGGGGCACCAGAGAAGTGGTGTAGAGCCCAGTaGGCCGAGGGACGCAGGGGG +
Preference number: 2 (lower is better)
Translates to: FNWHLVLQAQAETGAPEKWCRAQ*AEGRRG
Trigger: CCCCCTGCGTCCCTCGGCGCACTGGGCTCTACACCA...CTTCTCTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGCACCAGATGCCAATTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GGCTGGAGGAGCACAGGGCTTTGGGGAGGTTCCAGGATGTTCAGCATGATCATCGGAGAGGGGGCAACATaGGGCTGGGAGAGAAGGGCT +
Preference number: 2 (lower is better)
Translates to: GWRSTGLWGGSRMFSMIIGEGAT*GWERRA
Trigger: AGCCCTTCTCTCCCAGCCCCATGTTGCCCCCTCTCC...GATGATCATGCTGAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTCCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GAAAGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCTCTAGGGACGCAGGGGGCTaGCACTGTGGAGGCAGTGGA +
Preference number: 2 (lower is better)
Translates to: ERDAGGAPESVSDDRTSSRDAGG*HCGGSG
Trigger: TCCACTGCCTCCACAGTGCCAGCCCCCTGCGTCCCT...AGAGGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CAA 90 bp GACGGCAGAGTGGACGGCAGCGGACAGAAGCAGCCACTCTGCCTCTaGTCCCTTTCTGAGTGCACCACATCTGACTCTGTAAGCGGGTCT +
Preference number: 2 (lower is better)
Translates to: DGRVDGSGQKQPLCL*SLSECTTSDSVSGS
Trigger: AGACCCGCTTACAGAGTCAGATGTGGTGCACTCAGAAAGGGACAAGAGGCAGAGTGGCTGCTTCTGTCCGCTGCCGTCCACTCTGCCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp GGAGGTGGACACACCATCAGCATCTCAAGAAAGGGATGCTGGAGGGGCCCCAGACCCGGGGAGTCCATCTaGAGCGGAAAATGTGAAGGC +
Preference number: 2 (lower is better)
Translates to: GGGHTISISRKGCWRGPRPGESI*SGKCEG
Trigger: GCCTTCACATTTTCCGCTGCAGATGGACTCCCCGGG...TCTGGGGCCCCTCCAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCTGACGAAGTACTGGAAGGGTCCACTCTaGCTTTGGGAAGAGCCGGGG +
Preference number: 2 (lower is better)
Translates to: ETGLPRVPLGTDRMLTKYWKGPL*LWEEPG
Trigger: CCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCA...GTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp AGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCTCTCCCGGACGAGGATGGAGATaGCAGAGCTGCTGTAGAGGG +
Preference number: 2 (lower is better)
Translates to: RDAGGAPESVSDDRTSSPGRGWR*QSCCRG
Trigger: CCCTCTACAGCAGCTCTGCCATCTCCATCCTCGTCC...GGGAGAGGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GGCTGGAGGAGCACAGGGCTTTGGGGAGGTTCCAGGATGTTCAGCATGATCATCCTGGGAGAGAAGGGCTaGGGCTCACAGGACGAGGAT +
Preference number: 2 (lower is better)
Translates to: GWRSTGLWGGSRMFSMIILGEKG*GSQDED
Trigger: ATCCTCGTCCTGTGAGCCCCAGCCCTTCTCTCCCAG...GATGATCATGCTGAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGAGGGGGCTGGCACTGTaGAGGCAGTGGACAGAGGCT +
Preference number: 2 (lower is better)
Translates to: KTGSEESARMCGTLSIPLRGLAL*RQWTEA
Trigger: AGCCTCTGTCCACTGCCTCCACAGTGCCAGCCCCCT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR GCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGGGGATGTGGCCCCCATaGCACTGGGCCATGGTTGAC +
Preference number: 2 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQGMWPP*HWAMVD
Trigger: GTCAACCATGGCCCAGTGGCATGGGGGCCACATCCC...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACGGGATGTGGCCCCCATaGCACTGGGCCATGGTTGAC +
Preference number: 2 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENGMWPP*HWAMVD
Trigger: GTCAACCATGGCCCAGTGGCATGGGGGCCACATCCC...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp GTGGAAGACAGCGGCGTGGTGGAGTGGATGGATGGGGATGTCATCTGGCTCAGACGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: VEDSGVVEWMDGDVIWLRRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...TCTGAGCCAGATGACATCCCCATCCATCCACTCCACCACGCCGCTGTCTTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR GCA 90 bp GTAGAGGGGCCAGGCTCCTCTGAGGACAGGAACAGGGTGGTGGAAGACTGTGAGGGACTAATGGAAGCCTaGTGGTGGAGCTTCAGCTTG +
Preference number: 2 (lower is better)
Translates to: VEGPGSSEDRNRVVEDCEGLMEA*WWSFSL
Trigger: CAAGCTGAAGCTCCACCAGCAGGCTTCCATTAGTCC...CTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCCTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp GGTAAAGGTGGCTGGGTAGTGCATTCGTGGGTTGGAGAAGCGGCTCTCAGTGAGAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 2 (lower is better)
Translates to: GKGGWVVHSWVGEAALSEKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...CTCACTGAGAGCCGCTTCTCCAACCCACGAATGCACTACCCAGCCACCTTTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp CATCCAGTCAACAAGGTGGGGTGCAGCCTCTGGGGAGGAGGTCACAATGGTGTAGTGAGTCCAAGGTGCTaGGTTCTGAATCCCGGGGAG +
Preference number: 2 (lower is better)
Translates to: HPVNKVGCSLWGGGHNGVVSPRC*VLNPGE
Trigger: CTCCCCGGGATTCAGAACCCAGCACCTTGGACTCAC...TACACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGTGGTGGAAGACTGTaGGTCCAAGGTGCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGGGRL*VQGAGF
Trigger: GAACCCAGCACCTTGGACTCACAGTCTTCCACCACC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp CAAGAAAGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCCAGCATGATCATCCCTaGCAGGGCCTGCATGCTGAC +
Preference number: 2 (lower is better)
Translates to: QERDAGGAPESVSDDRTSQHDHP*QGLHAD
Trigger: GTCAGCATGCAGGCCCTGCCAGGGATGATCATGCTG...GGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCTTTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp GGACCATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 2 (lower is better)
Translates to: GPSWKETGLPRVPLGTDRTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...CCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATGGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR TCA 90 bp AGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCTCTCCCTTCCTGCTACTCGCTTaGGAAACAAAGCCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: RDAGGAPESVSDDRTSSPFLLLA*ETKPSL
Trigger: GAGGGAAGGCTTTGTTTCTCAAGCGAGTAGCAGGAA...GGGAGAGGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR GCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAAATCCCTGGCAGGGCCTaGATGCTGACTGTGGCCCCT +
Preference number: 2 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQIPGRA*MLTVAP
Trigger: AGGGGCCACAGTCAGCATGCAGGCCCTGCCAGGGAT...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp CAAGAAAGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCCTCACAGGACGAGGATaGAGATGGCAGAGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: QERDAGGAPESVSDDRTSLTGRG*RWQSCC
Trigger: ACAGCAGCTCTGCCATCTCCATCCTCGTCCTGTGAG...GGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCTTTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp CGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTAGAAGATCCAGCTCTTTTAGGACACCAGGGGACGTaGCAGTGGGGCAGCTGGGCA +
Preference number: 2 (lower is better)
Translates to: RGCVVPSASLCLEDPALLGHQGT*QWGSWA
Trigger: TGCCCAGCTGCCCCACTGCCACGTCCCCTGGTGTCC...TAAAAGAGCTGGATCTTCTAAACAAAGGGATGCTGAGGGTACCACACATCCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGAGGAGCACAGGGCTTTaGGGAGGTTCCAGGATGTTC +
Preference number: 2 (lower is better)
Translates to: KTGSEESARMCGTLSIPLRSTGL*GGSRMF
Trigger: GAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp TGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGGTAAGTGGCCACCTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 2 (lower is better)
Translates to: WFPGTVHCHFNSSVVSGHLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...GTGGCCACTTACCACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
3UTR-3UTR TCA 90 bp TTTAATTGGCATCTGGTGCTTCAGGCACAGGCTGAGACTGGGGCACCAGAGAAGCTGCAGCGGAAAATGTaGAGGCTCTGGGACCAGAGA +
Preference number: 2 (lower is better)
Translates to: FNWHLVLQAQAETGAPEKLQRKM*RLWDQR
Trigger: TCTCTGGTCCCAGAGCCTTCACATTTTCCGCTGCAG...CTTCTCTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGCACCAGATGCCAATTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp ATAGTAGAGATATGGAGTGCTGCTGGTCTGGAAGGGTCCACTCTGGCTTTGGGAGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: IVEIWSAAGLEGSTLALGVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...TCCCAAAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCCATATCTCTACTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp GAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCTGACGAAGTACGTAGGTAAAGGTGGCTaGGTAGTGCATTCGTGGGTT +
Preference number: 2 (lower is better)
Translates to: ETGLPRVPLGTDRMLTKYVGKGG*VVHSWV
Trigger: AACCCACGAATGCACTACCCAGCCACCTTTACCTAC...GTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp CGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTAGAAGATCCAGCTCTTTTAGGTGGCAGCAGCGGCTaGAGGAGCACAGGGCTTTGG +
Preference number: 2 (lower is better)
Translates to: RGCVVPSASLCLEDPALLGGSSG*RSTGLW
Trigger: CCAAAGCCCTGTGCTCCTCCAGCCGCTGCTGCCACC...TAAAAGAGCTGGATCTTCTAAACAAAGGGATGCTGAGGGTACCACACATCCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CAA 90 bp ATGGTGGGACCATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTGACGAAGTACCATAGTAGAGATATG +
Preference number: 2 (lower is better)
Translates to: MVGPSWKETGLPRVP*GTDRMLTKYHSRDM
Trigger: CATATCTCTACTATGGTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAACAGCTTGTCAGCTCGTaGAGCCAGCAGGACACTGCT +
Preference number: 2 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQQLVSS*SQQDTA
Trigger: AGCAGTGTCCTGCTGGCTCCACGAGCTGACAAGCTG...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CAA 90 bp GTGAAACTCTTGCCTCGTCCGCTCCGGCCCACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTTTTCATAACAGCGGAGGCATTTCGG +
Preference number: 2 (lower is better)
Translates to: VKLLPRPLRPTNLRS*NLATWFFITAEAFR
Trigger: CCGAAATGCCTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGTGGGCCGGAGCGGACGAGGCAAGAGTTTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
3UTR-3UTR TCA 90 bp GTCATAGGACCACGGTGGGGAAGACTGTGCCTGCCTGGGATTTCTTGGTTCCCGCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: VIGPRWGRLCLPGISWFPQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...CGGGAACCAAGAAATCCCAGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR-3UTR TCA 90 bp ATGCTTGGGAACTGCCTGGGGTCTGAAAAAGGGCCCAGTTCTGAAGCACCTGCCCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 2 (lower is better)
Translates to: MLGNCLGSEKGPSSEAPALGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...GGCAGGTGCTTCAGAACTGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp ATGCTTGGGAACTGCCTGGGGTCTGAAAAAGGGCCCAGTTCTGAAGCACCTGCCCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 2 (lower is better)
Translates to: MLGNCLGSEKGPSSEAPALTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...GGCAGGTGCTTCAGAACTGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CCA 90 bp CATCCAGTCAACAAGGTGGGGTGCAGCCTCTGGGGAGGAGGTCACAATGGTGTAAGAAACAAAGGAGAGTaGACTAATGGAAGCCTGCTG +
Preference number: 2 (lower is better)
Translates to: HPVNKVGCSLWGGGHNGVRNKGE*TNGSLL
Trigger: CAGCAGGCTTCCATTAGTCCACTCTCCTTTGTTTCT...TACACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp ACTCTGTCCTTGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCGTGGCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 2 (lower is better)
Translates to: TLSLWIKRTWCRVQGGPWLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...CCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR TCA 90 bp CCTGGGATTTCTTGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 2 (lower is better)
Translates to: PGISWFPGTVHCHFNSSVLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...CACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCAAGAAATCCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR-3UTR CCA 90 bp TGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGGTAAGTGGCCACTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 2 (lower is better)
Translates to: WFPGTVHCHFNSSVVSGHLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...GTGGCCACTTACCACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
3UTR CAA 90 bp AAATGTGAAGGCTCTGGGACCAGAGAGCCCTTTCCTGCTACTCGCTaGAGAAACAAAGCCTTCCCTCCTCCCAACTTGAAAGAAACAAAG +
Preference number: 2 (lower is better)
Translates to: KCEGSGTREPFPATR*RNKAFPPPNLKETK
Trigger: CTTTGTTTCTTTCAAGTTGGGAGGAGGGAAGGCTTTGTTTCTCAAGCGAGTAGCAGGAAAGGGCTCTCTGGTCCCAGAGCCTTCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR TCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAAAACTGGCTCTTCTGCTaGTTTTGCTTGTCTCCAGCA +
Preference number: 2 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQNWLFC*FCLSPA
Trigger: TGCTGGAGACAAGCAAAATCAGCAGAAGAGCCAGTT...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTCTTCATTCGACTTCCTaGAAAGCTGCTGGGGGCCCT +
Preference number: 2 (lower is better)
Translates to: NKGGQRETTCFQNCFWVALHSTS*KAAGGP
Trigger: AGGGCCCCCAGCAGCTTTCCAGGAAGTCGAATGAAG...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCGTCCCCATCTGCCTCTaGACTGTCCCGCATTGGGAC +
Preference number: 2 (lower is better)
Translates to: IASVTISILRKHKGGLTIVPICL*TVPHWD
Trigger: GTCCCAATGCGGGACAGTCCAGAGGCAGATGGGGAC...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR TCA 90 bp GCCCTCAACCACGAAGCCTGCAATTTAGAGTTTTGCTCAACTCAGAGACCACAGGGAACAGGTCACTTATaGAAACAGACCAGACAACAC +
Preference number: 2 (lower is better)
Translates to: ALNHEACNLEFCSTQRPQGTGHL*KQTRQH
Trigger: GTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCC...CTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR TCA 90 bp GCCCTCAACCACGAAGCCTGCAATTTAGAGTTTTGCTCAACTCAGAGACCACAGTACCTGCAGCAAGTCTaGAGGAAAACTTTGGAACAG +
Preference number: 2 (lower is better)
Translates to: ALNHEACNLEFCSTQRPQYLQQV*RKTLEQ
Trigger: CTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTA...CTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTAGGGATGTGGCCCCCATaGCACTGGGCCATGGTTGAC +
Preference number: 2 (lower is better)
Translates to: TLCLKELRLLSNISDMALGMWPP*HWAMVD
Trigger: GTCAACCATGGCCCAGTGGCATGGGGGCCACATCCC...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTTCCTCCAAGGAGGGCTaGATCTCAAACTCACACACA +
Preference number: 2 (lower is better)
Translates to: NKGGQRETTCFQNCFWVASSKEG*ISNSHT
Trigger: TGTGTGTGAGTTTGAGATCCAGCCCTCCTTGGAGGA...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CAA 90 bp TTTGAGAACCGTGTGCATCTAAACCCAGGGAAGTGGAGGGAAGGGTaGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTG +
Preference number: 2 (lower is better)
Translates to: FENRVHLNPGKWREG*VSTHKRLQKSNKTL
Trigger: CAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCCTTCCCTCCACTTCCCTGGGTTTAGATGCACACGGTTCTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR TCA 90 bp AGACTGTGCCTGCCTGGGATCTGTAATCTGACTCTGTCCTTGTGGATTAAAAGGCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: RLCLPGICNLTLSLWIKRQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...CCTTTTAATCCACAAGGACAGAGTCAGATTACAGATCCCAGGCAGGCACAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR TCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAGGACAAAGGTCAACCTaGGAAGGAACAGAGAGCGAG +
Preference number: 2 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRGQRST*EGTESE
Trigger: CTCGCTCTCTGTTCCTTCTCAGGTTGACCTTTGTCC...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR GCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCGTATATATTAACACATaGGGGATGTGGCCCCCATGC +
Preference number: 2 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIVYINT*GMWPPC
Trigger: GCATGGGGGCCACATCCCGCATGTGTTAATATATAC...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR TCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCGGAACAGGTCACTTATaGAAACAGACCAGACAACAC +
Preference number: 2 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIGTGHL*KQTRQH
Trigger: GTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCC...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR TCA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGTACCTGCAGCAAGTCTaGAGGAAAACTTTGGAACAG +
Preference number: 2 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWYLQQV*RKTLEQ
Trigger: CTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTA...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR TCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGGGTGAAGAAAGCACTTaGATTTTCCCAAATAAGGGA +
Preference number: 2 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKGEEST*IFPNKG
Trigger: TCCCTTATTTGGGAAAATTCAAGTGCTTTCTTCACC...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR GCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAACATGGACCGTGGTGTaGTTCAAGCTACCACACACA +
Preference number: 2 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRTWTVV*FKLPHT
Trigger: TGTGTGTGGTAGCTTGAAGCACACCACGGTCCATGT...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGATCTGAAGGAAAACTTTaGAACAGGTGGACGGCAGAG +
Preference number: 2 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRSEGKL*NRWTAE
Trigger: CTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGA...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAAAGGAAACACAAAGGTaGGCTGACCATCTGCGTCTA +
Preference number: 2 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRKETQR*ADHLRL
Trigger: TAGACGCAGATGGTCAGCCCACCTTTGTGTTTCCTT...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CAA 90 bp CAGCCAACTCAAACACTATACCATTATGGCTATAATAATAAGGCATaGCCATTTTCAGTTTGCATAAAGGGAGAAGCAGAAGGAACGGGG +
Preference number: 2 (lower is better)
Translates to: QPTQTLYHYGYNNKA*PFSVCIKGEAEGTG
Trigger: CCCCGTTCCTTCTGCTTCTCCCTTTATGCAAACTGAAAATGGCAATGCCTTATTATTATAGCCATAATGGTATAGTGTTTGAGTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CAA 90 bp AGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGCACAATTaGTACAATACGTGCATAGAAAGCAAATCTTGGGCAATAGCAATC +
Preference number: 2 (lower is better)
Translates to: RVNSSTIMTCGTKHN*YNTCIESKSWAIAI
Trigger: GATTGCTATTGCCCAAGATTTGCTTTCTATGCACGTATTGTACAAATTGTGCTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR TCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGAGGCAATCAAATGCCTaGAAGAAAGAAACAGAGCAT +
Preference number: 2 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLRQSNA*KKETEH
Trigger: ATGCTCTGTTTCTTTCTTTCAGGCATTTGATTGCCT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGGTTCAAATGAGTACCTaGAGCAAGTCTGAAGGAAAA +
Preference number: 2 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLVQMST*SKSEGK
Trigger: TTTTCCTTCAGACTTGCTGCAGGTACTCATTTGAAC...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR GCA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGGTTCAAATGAGTACCTaGAGCAAGTCTGAAGGAAAA +
Preference number: 2 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWVQMST*SKSEGK
Trigger: TTTTCCTTCAGACTTGCTGCAGGTACTCATTTGAAC...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR GCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCGTTCAAATGAGTACCTaGAGCAAGTCTGAAGGAAAA +
Preference number: 2 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIVQMST*SKSEGK
Trigger: TTTTCCTTCAGACTTGCTGCAGGTACTCATTTGAAC...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR TCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCGCAGAACTCTTAGAATaGCTCAGGATTCAAATGAAG +
Preference number: 2 (lower is better)
Translates to: IASVTISILRKHKGGLTIAELLE*LRIQMK
Trigger: CTTCATTTGAATCCTGAGTCATTCTAAGAGTTCTGC...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR TCA 90 bp AAGCACACTTTTAGAGACCGAAGTCAACATATCATTACACTAAGAAATGTTCCATACCTGCAGCAAGTCTaGAGGAAAACTTTGGAACAG +
Preference number: 2 (lower is better)
Translates to: KHTFRDRSQHIITLRNVPYLQQV*RKTLEQ
Trigger: CTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTA...TGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTCTCTAAAAGTGTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CAA 90 bp GACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGGACTGGGAAGGGAGAGGAGCACAGGGCTTaGGGGAGGTTCCAGGATGTT +
Preference number: 3 (lower is better)
Translates to: DLLSPPLAWLGVRWTGKGEEHRA*GRFQDV
Trigger: AACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTC...TCCCTTCCCAGTCCAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp CAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGGATGTCATCTGGCTCA +
Preference number: 3 (lower is better)
Translates to: QVARCPVWKTAA*WSGWMGMSSGS
Trigger: TGAGCCAGATGACATCCCCATCCATCCACTCCACCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp GCCGCTCATGATCCTTGCCTCGGACACCAGGGGACGTaGCAGTGGGGCAGCTGGGCATCCAGTCAACAAGGT +
Preference number: 3 (lower is better)
Translates to: AAHDPCLGHQGT*QWGSWASSQQG
Trigger: ACCTTGTTGACTGGATGCCCAGCTGCCCCACTGCCACGTCCCCTGGTGTCCGAGGCAAGGATCATGAGCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp CCCTCTCTGAAGCTAGAGCTGGGGCCGGGGCCATCATaGTCTGTGGCCGCTCATGATCCTTGCCTCGGACAC +
Preference number: 3 (lower is better)
Translates to: PSLKLELGPGPS*SVAAHDPCLGH
Trigger: GTGTCCGAGGCAAGGATCATGAGCGGCCACAGACCATGATGGCCCCGGCCCCAGCTCTAGCTTCAGAGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR TCA 72 bp GTAGTGAGTGGTGGCGGACATGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTAGGTAAAGGTGGCTGG +
Preference number: 3 (lower is better)
Translates to: VVSGGGHAEGHA*RDWRGVGKGGW
Trigger: CCAGCCACCTTTACCTACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTCACTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp GCTGGGCATCCAGTCAACAAGGTGGGGTGCAGCCTCTaGGGAGGAGGTCACAATGGTGTAGAGCCCAGTGCG +
Preference number: 3 (lower is better)
Translates to: AGHPVNKVGCSL*GGGHNGVEPSA
Trigger: CGCACTGGGCTCTACACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGATGCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp CCAGTTCCCCGAGGACAGCGACTTCATTCGACTTCCTaGAAAGCTGCTGGGGGCCCTCCTTGGGTAAGGCAC +
Preference number: 3 (lower is better)
Translates to: PVPRGQRLHSTS*KAAGGPPWVRH
Trigger: GTGCCTTACCCAAGGAGGGCCCCCAGCAGCTTTCCAGGAAGTCGAATGAAGTCGCTGTCCTCGGGGAACTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 72 bp GGTCATAGGACCACGGTGGGGAAGACTGTGCCTGCCTaGGATTTCTTGGTTCCCGGGGACCGTCCACTGTCA +
Preference number: 3 (lower is better)
Translates to: GHRTTVGKTVPA*DFLVPGDRPLS
Trigger: TGACAGTGGACGGTCCCCGGGAACCAAGAAATCCCAGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR-3UTR CAA 90 bp CATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCTCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 3 (lower is better)
Translates to: HPGRRPVSPGYHWELIGCSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...GCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp GGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTGCTaGGTTCTGAATCCCGGGGAGTCCATCTGCAGCGGA +
Preference number: 3 (lower is better)
Translates to: GTGWWKTVSPRC*VLNPGESICSG
Trigger: TCCGCTGCAGATGGACTCCCCGGGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CAA 90 bp ATGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGGTGGAGTGGATGGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 3 (lower is better)
Translates to: MAGSPVPRVEDSGVVEWMVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...CATCCACTCCACCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR TCA 72 bp CAGTGTCATCATCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACA +
Preference number: 3 (lower is better)
Translates to: QCHHLKYAWARQ*WQVARCPVWKT
Trigger: TGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGATGATGACACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 72 bp CCAAGGTGCTGGGTTCTGAATCCCGGGGAGTCCATCTaGAGCGGAAAATGTGAAGGCTCTGGGACCAGAGAG +
Preference number: 3 (lower is better)
Translates to: PRCWVLNPGESI*SGKCEGSGTRE
Trigger: CTCTCTGGTCCCAGAGCCTTCACATTTTCCGCTGCAGATGGACTCCCCGGGATTCAGAACCCAGCACCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 72 bp ACAGGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTaGTGGGTTCTGAATCCCGGGGAGTCCATCTGCAGC +
Preference number: 3 (lower is better)
Translates to: TGTGWWKTVSPR*WVLNPGESICS
Trigger: GCTGCAGATGGACTCCCCGGGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp TCAGTGCCTTTCCTCCGAGCGGAGGGAACCCCCACATaGCTCCTCCCTTCTCAACCTCTAATGGTGTGGAGA +
Preference number: 3 (lower is better)
Translates to: SVPFLRAEGTPT*LLPSQPLMVWR
Trigger: TCTCCACACCATTAGAGGTTGAGAAGGGAGGAGCCATGTGGGGGTTCCCTCCGCTCGGAGGAAAGGCACTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 72 bp CCACGGTGGGGAAGACTGTGCCTGCCTGGGATTTCTTaGTTCCCGGGGACCGTCCACTGTCACTTTAATAGC +
Preference number: 3 (lower is better)
Translates to: PRWGRLCLPGIS*FPGTVHCHFNS
Trigger: GCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCAAGAAATCCCAGGCAGGCACAGTCTTCCCCACCGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR CCA 72 bp AGGGGCCAGGCTCCTCTGAGGACAGGAACAGGGTGGTaGAAGACTGTGAGTCCAAGGTGCTGGGTTCTGAAT +
Preference number: 3 (lower is better)
Translates to: RGQAPLRTGTGW*KTVSPRCWVLN
Trigger: ATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CAA 90 bp GGAGGTGGACACACCATCAGCATCTCAAGAAAGGGATGCTGGAGGGGCCCCAGAACCTTTCCAATCACCTaGTCCCTGGAACTTCTCGGG +
Preference number: 3 (lower is better)
Translates to: GGGHTISISRKGCWRGPRTFPIT*SLELLG
Trigger: CCCGAGAAGTTCCAGGGACAAGGTGATTGGAAAGGT...TCTGGGGCCCCTCCAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR TCA 72 bp TCTGAATCCCGGGGAGTCCATCTGCAGCGGAAAATGTaGAGGCTCTGGGACCAGAGAGCCCTTTCCTGCTAC +
Preference number: 3 (lower is better)
Translates to: SESRGVHLQRKM*RLWDQRALSCY
Trigger: GTAGCAGGAAAGGGCTCTCTGGTCCCAGAGCCTTCACATTTTCCGCTGCAGATGGACTCCCCGGGATTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp TCTGAAGGAAAACTTTGGAACAGGTGGACGGCAGAGTaGACGGCAGCGGACAGAAGCAGCCACTCTGCCTCT +
Preference number: 3 (lower is better)
Translates to: SEGKLWNRWTAE*TAADRSSHSAS
Trigger: AGAGGCAGAGTGGCTGCTTCTGTCCGCTGCCGTCCACTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CAA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTAACACCTTTGACGGTTaGTTCCTTGGTAAAGGGGAC +
Preference number: 3 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTNTFDG*FLGKGD
Trigger: GTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTT...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR TCA 72 bp GCTCGTGGAGCCAGCAGGACACTGCTATCCTTTGAGTaGCAGGCCAAGGGCATCCAATGTGTGAGCAAACCA +
Preference number: 3 (lower is better)
Translates to: ARGASRTLLSFE*QAKGIQCVSKP
Trigger: TGGTTTGCTCACACATTGGATGCCCTTGGCCTGTCACTCAAAGGATAGCAGTGTCCTGCTGGCTCCACGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 72 bp TCTGACTCTGTAAGCGGGTCTGCAGAGTGTACCGGCTaGCACACAGCAGAGGCTGTGGTTTCAAAGCACAGA +
Preference number: 3 (lower is better)
Translates to: SDSVSGSAECTG*HTAEAVVSKHR
Trigger: TCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCAGACCCGCTTACAGAGTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR GCA 72 bp TTGGATTTAATAGCGTGCTGCCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGGAAGGAGACCGGTCTC +
Preference number: 3 (lower is better)
Translates to: LDLIACCHSRWW*MVGPSWKETGL
Trigger: GAGACCGGTCTCCTTCCAGGATGGTCCCACCATGCACCACCACCTCGAATGGCAGCACGCTATTAAATCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp CCTCCTTGGGTAAGGCACTTTTTGGGTTCCCCTGAATaGCTGTATGGTGAGGCTGGTAGGTGCAGGCTCCTA +
Preference number: 3 (lower is better)
Translates to: PPWVRHFLGSPE*LYGEAGRCRLL
Trigger: TAGGAGCCTGCACCTACCAGCCTCACCATACAGCCATTCAGGGGAACCCAAAAAGTGCCTTACCCAAGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 72 bp ATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACCTACTCTCATACTGGG +
Preference number: 3 (lower is better)
Translates to: IKRTWCRVQGGP*VLRRDTYSHTG
Trigger: CCCAGTATGAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CAA 90 bp CAGAAAGTGTTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGCTCTTCTGCTGATTTaGCTTGTCTCCAGCAAAGAC +
Preference number: 3 (lower is better)
Translates to: QKVFLTIGPPLPSARLAGALLLI*LVSSKD
Trigger: GTCTTTGCTGGAGACAAGCAAAATCAGCAGAAGAGC...CCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAACACTTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CAA 90 bp GAAAGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCTCTAACGAGAGAGGGGCATaGGAAGGTGAAAGGGAACAC +
Preference number: 3 (lower is better)
Translates to: ERDAGGAPESVSDDRTSSNERGA*EGEREH
Trigger: GTGTTCCCTTTCACCTTCCAATGCCCCTCTCTCGTT...AGAGGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR TCA 72 bp GAGGAATGCTGGGATTGGCCTGGTGGTATCACTGAATaGTCCCTGGCCTGGATTAGGAAGCCACACTTAGGG +
Preference number: 3 (lower is better)
Translates to: EECWDWPGGITE*SLAWIRKPHLG
Trigger: CCCTAAGTGTGGCTTCCTAATCCAGGCCAGGGATCATTCAGTGATACCACCAGGCCAATCCCAGCATTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 72 bp CAAATGAGTACCTGCAGCAAGTCTGAAGGAAAACTTTaGAACAGGTGGACGGCAGAGTGGACGGCAGCGGAC +
Preference number: 3 (lower is better)
Translates to: QMSTCSKSEGKL*NRWTAEWTAAD
Trigger: GTCCGCTGCCGTCCACTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTACTCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CAA 90 bp ATAGGACCACGGTGGGGAAGACTGTGCCTGCCTGGGATTTCTTGGTTCCCGGGGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 3 (lower is better)
Translates to: IGPRWGRLCLPGISWFPGTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CCCCGGGAACCAAGAAATCCCAGGCAGGCACAGTCTTCCCCACCGTGGTCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR-3UTR CAA 90 bp CATCCAGTCAACAAGGTGGGGTGCAGCCTCTGGGGAGGAGGTCACAATGGTGTATTTCCTGCTACTCGCTaGAGAAACAAAGCCTTCCCT +
Preference number: 3 (lower is better)
Translates to: HPVNKVGCSLWGGGHNGVFPATR*RNKAFP
Trigger: AGGGAAGGCTTTGTTTCTCAAGCGAGTAGCAGGAAA...TACACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR GCA 72 bp AGGATGCTGACGAAGTACCATAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTCCACTCTGGCTTTGGG +
Preference number: 3 (lower is better)
Translates to: RMLTKYHSRDME*CWSGRVHSGFG
Trigger: CCCAAAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp AATTTGGATTTAATAGCGTGCTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCCTGGAAGGAGACCGGT +
Preference number: 3 (lower is better)
Translates to: NLDLIACCHSRW*CMVGPSWKETG
Trigger: ACCGGTCTCCTTCCAGGATGGTCCCACCATGCACCACCACCTCGAATGGCAGCACGCTATTAAATCCAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR-3UTR CAA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCATTGCCATTTTCAGTTaGCATAAAGGGAGAAGCAGA +
Preference number: 3 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPIAIFS*HKGRSR
Trigger: TCTGCTTCTCCCTTTATGCAAACTGAAAATGGCAAT...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CAA 90 bp ATGCTTGGGAACTGCCTGGGGTCTGAAAAAGGGCCCAGTTCTGAAGCACCTGCCACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 3 (lower is better)
Translates to: MLGNCLGSEKGPSSEAPATNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...GGCAGGTGCTTCAGAACTGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR TCA 72 bp GTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAGATATGGAGTGCTGCT +
Preference number: 3 (lower is better)
Translates to: VSPGYHWELIGC*RSTIVEIWSAA
Trigger: AGCAGCACTCCATATCTCTACTATGGTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 72 bp CAATGGGTACATGGCCTTCCCTGCTCTTGTTGGCCCTaGCTAATGAAAGCCTCCAATGTCAAAGGTTTCCTG +
Preference number: 3 (lower is better)
Translates to: QWVHGLPCSCWP*LMKASNVKGFL
Trigger: CAGGAAACCTTTGACATTGGAGGCTTTCATTAGGCAGGGCCAACAAGAGCAGGGAAGGCCATGTACCCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR GCA 72 bp CACAATGGCAGATACCAATGGGTACATGGCCTTCCCTaGTCTTGTTGGCCCTGCCTAATGAAAGCCTCCAAT +
Preference number: 3 (lower is better)
Translates to: HNGRYQWVHGLP*SCWPCLMKASN
Trigger: ATTGGAGGCTTTCATTAGGCAGGGCCAACAAGAGCAGGGAAGGCCATGTACCCATTGGTATCTGCCATTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR GCA 72 bp CCTTTCCAATCACCTTGTCCCTGGAACTTCTCGGGGTaGTTCTTCTATTGGGGATTTAGAACGAGAGAGGGG +
Preference number: 3 (lower is better)
Translates to: PFQSPCPWNFSG*FFYWGFRTREG
Trigger: CCCCTCTCTCGTTCTAAATCCCCAATAGAAGAAGCACCCCGAGAAGTTCCAGGGACAAGGTGATTGGAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp TGTAATCTGACTCTGTCCTTGTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGGCCGTGGGTTCTGAGG +
Preference number: 3 (lower is better)
Translates to: CNLTLSLWIKRT*CRVQGGPWVLR
Trigger: CCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAGATTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp TGCCTGCCTGGGATCTGTAATCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGG +
Preference number: 3 (lower is better)
Translates to: CLPGICNLTLSL*IKRTWCRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAGATTACAGATCCCAGGCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CCA 72 bp GCCAATTTAGTGAGGGCCTTTGCTATGATGTCCAGATaGCCATTCATTGTCCGTAGCTCCACCAGGATGTCC +
Preference number: 3 (lower is better)
Translates to: ANLVRAFAMMSR*PFIVRSSTRMS
Trigger: GGACATCCTGGTGGAGCTACGGACAATGAATGGCCATCTGGACATCATAGCAAAGGCCCTCACTAAATTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CAA 90 bp CCTGGGATTTCTTGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 3 (lower is better)
Translates to: PGISWFPGTVHCHFNSSVVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...CACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCAAGAAATCCCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160672.2
3UTR GCA 72 bp AACAAACTAGGTTTAGAGTCATCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGACCGTCCACTGTCACT +
Preference number: 3 (lower is better)
Translates to: NKLGLESSSFCL*LLGSRGPSTVT
Trigger: AGTGACAGTGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGATGACTCTAAACCTAGTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR GCA 72 bp TGTTTAGAAGATCCAGCTCTTTTAATTGGCATCTGGTaGTTCAGGCACAGGCTGAGACTGGGGCACCAGAGA +
Preference number: 3 (lower is better)
Translates to: CLEDPALLIGIW*FRHRLRLGHQR
Trigger: TCTCTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGCACCAGATGCCAATTAAAAGAGCTGGATCTTCTAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp TCCTTTGAGAACCGTGTGCATCTAAACCCAGGGAAGTaGAGGGAAGGGTTGGTTAGTACACATAAACGGCTC +
Preference number: 3 (lower is better)
Translates to: SFENRVHLNPGK*REGLVSTHKRL
Trigger: GAGCCGTTTATGTGTACTAACCAACCCTTCCCTCCACTTCCCTGGGTTTAGATGCACACGGTTCTCAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 72 bp CTTTGTTTAGAAGATCCAGCTCTTTTAATTGGCATCTaGTGCTTCAGGCACAGGCTGAGACTGGGGCACCAG +
Preference number: 3 (lower is better)
Translates to: LCLEDPALLIGI*CFRHRLRLGHQ
Trigger: CTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGCACCAGATGCCAATTAAAAGAGCTGGATCTTCTAAACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR CCA 72 bp AAGAGATATGTGAAGTCCACTGGAGTCCACTGGAGGTaGACACACCATCAGCATCTCAAGAAAGGGATGCTG +
Preference number: 3 (lower is better)
Translates to: KRYVKSTGVHWR*THHQHLKKGML
Trigger: CAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATATCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR-3UTR CAA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGCAGCCACTCTGCCTCTaGTCCCTTTCTGAGTGCACC +
Preference number: 3 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLQPLCL*SLSECT
Trigger: GGTGCACTCAGAAAGGGACAAGAGGCAGAGTGGCTG...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR TCA 72 bp TGTGAGCAAACCAAGCTAAGTAACTGGCTCTTCTGCTaGTTTTGCTTGTCTCCAGCAAAGACGGGATCAGAG +
Preference number: 3 (lower is better)
Translates to: CEQTKLSNWLFC*FCLSPAKTGSE
Trigger: CTCTGATCCCGTCTTTGCTGGAGACAAGCAAAATCAGCAGAAGAGCCAGTTACTTAGCTTGGTTTGCTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
3UTR CCA 72 bp TTTAAGAAGAGATATGTGAAGTCCACTGGAGTCCACTaGAGGTGGACACACCATCAGCATCTCAAGAAAGGG +
Preference number: 3 (lower is better)
Translates to: FKKRYVKSTGVH*RWTHHQHLKKG
Trigger: CCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATATCTCTTCTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
3UTR TCA 72 bp GAACTCAAAAGTTCAAATGAGTACCTGCAGCAAGTCTaGAGGAAAACTTTGGAACAGGTGGACGGCAGAGTG +
Preference number: 3 (lower is better)
Translates to: ELKSSNEYLQQV*RKTLEQVDGRV
Trigger: CACTCTGCCGTCCACCTGTTCCAAAGTTTTCCTTCAGACTTGCTGCAGGTACTCATTTGAACTTTTGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR GCA 72 bp AGAGCGAGGGGGTATAGGGTGCTGAAGGCAAAAGCTTaGAGAACTCTTAGAATGACTCAGGATTCAAATGAA +
Preference number: 3 (lower is better)
Translates to: RARGYRVLKAKA*RTLRMTQDSNE
Trigger: TTCATTTGAATCCTGAGTCATTCTAAGAGTTCTGCAAGCTTTTGCCTTCAGCACCCTATACCCCCTCGCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CAA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGAACACCTTTGACGGTTaGTTCCTTGGTAAAGGGGAC +
Preference number: 3 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLNTFDG*FLGKGD
Trigger: GTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR-3UTR CAA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTCTGCAATTTAGAGTTTaGCTCAACTCAGAGACCACA +
Preference number: 3 (lower is better)
Translates to: NKGGQRETTCFQNCFWVALQFRV*LNSETT
Trigger: TGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAG...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 72 bp GCTGCTGAAATAGGTATCAGACAAACACATGGACCGTaGTGTGCTTCAAGCTACCACACACAAACAATAAAT +
Preference number: 3 (lower is better)
Translates to: AAEIGIRQTHGP*CASSYHTQTIN
Trigger: ATTTATTGTTTGTGTGTGGTAGCTTGAAGCACACCACGGTCCATGTGTTTGTCTGATACCTATTTCAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CCA 72 bp GAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTaGCACAAAGCACAATTTGTACAATACGTGCATAGA +
Preference number: 3 (lower is better)
Translates to: EVQSKLIHDHDL*HKAQFVQYVHR
Trigger: TCTATGCACGTATTGTACAAATTGTGCTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR-3UTR CAA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTCTACATCTAAACTATTaGGAGATGGGAGTTATCTTC +
Preference number: 3 (lower is better)
Translates to: NKGGQRETTCFQNCFWVALHLNY*EMGVIF
Trigger: GAAGATAACTCCCATCTCCAAATAGTTTAGATGTAG...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR GCA 72 bp ATGACCTGTGGCACAAAGCACAATTTGTACAATACGTaGATAGAAAGCAAATCTTGGGCAATAGCAATCAGA +
Preference number: 3 (lower is better)
Translates to: MTCGTKHNLYNT*IESKSWAIAIR
Trigger: TCTGATTGCTATTGCCCAAGATTTGCTTTCTATGCACGTATTGTACAAATTGTGCTTTGTGCCACAGGTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR TCA 72 bp TTGCTTAGCAATATTTCCGATATGGCTCTAGCCCACTaGAGAAACTTGGTATTGAAGAAGAAGCACACTTTT +
Preference number: 3 (lower is better)
Translates to: LLSNISDMALAH*RNLVLKKKHTF
Trigger: AAAAGTGTGCTTCTTCTTCAATACCAAGTTTCTTCAGTGGGCTAGAGCCATATCGGAAATATTGCTAAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CCA 72 bp GAACACTTTTCTGCAGTTCAACCAATCACTTGTGCTTaGCTTTTTAATATGATAAGAGTCATAATGGCCACC +
Preference number: 3 (lower is better)
Translates to: EHFSAVQPITCA*LFNMIRVIMAT
Trigger: GGTGGCCATTATGACTCTTATCATATTAAAAAGCCAAGCACAAGTGATTGGTTGAACTGCAGAAAAGTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GGAGGTGGACACACCATCAGCATCTCAAGAAAGGGATGCTGGAGGGGCCCCAGATGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GGGHTISISRKGCWRGPRCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...TCTGGGGCCCCTCCAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCGACTTCCTGGAAAGCTGCTGGGGGCCCTCCTTGGGTAAGGCACTTTTTGGGTTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: STSWKAAGGPPWVRHFLGCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...ACCCAAAAAGTGCCTTACCCAAGGAGGGCCCCCAGCAGCTTTCCAGGAAGTCGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTGAGGGCCGTGGGTTCTaGGGCGGGACACCTACTCTC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTEGRGF*GGTPTL
Trigger: GAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTC...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGACCAGTTCGGCCGGGTaGTCCGCGATGATCTCCACC +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRTSSAG*SAMIST
Trigger: GGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CCGGGGCCATCATGGTCTGTGGCCGCTCATGATCCTTGCCTCGGACACCAGGGGGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: PGPSWSVAAHDPCLGHQGVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...CCCCTGGTGTCCGAGGCAAGGATCATGAGCGGCCACAGACCATGATGGCCCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCGAGGGCCGTGGGTTCTaGGGCGGGACACCTACTCTC +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPEGRGF*GGTPTL
Trigger: GAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTC...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp GTAAGCGGGTCTGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: VSGSAECTGCHTAEAVVSMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...TGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCAGACCCGCTTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAAGAAAGGGATGCTGGAGGGGCCCCAGAAAGTGTTTCTGACGATAGGACCTCCGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: QERDAGGAPESVSDDRTSARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...GGAGGTCCTATCGTCAGAAACACTTTCTGGGGCCCCTCCAGCATCCCTTTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GGCTGGAGGAGCACAGGGCTTTGGGGAGGTTCCAGGATGTTCAGCATGATCATCCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: GWRSTGLWGGSRMFSMIIPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...GATGATCATGCTGAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp CATCCAGTCAACAAGGTGGGGTGCAGCCTCTGGGGAGGAGGTCACAATGGTGTAATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: HPVNKVGCSLWGGGHNGVMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...TACACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCGAGTGGTGGCGGACATaGCGAGGGACATGCCTGACG +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPEWWRT*RGTCLT
Trigger: CGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTC...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGCGGTGGGGAAGACTGTaGCTGCCTGGGATTTCTTGG +
Preference number: 4 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLRWGRL*LPGISW
Trigger: CCAAGAAATCCCAGGCAGGCACAGTCTTCCCCACCG...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTGGTGTAGAGCCCAGTaGGCCGAGGGACGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLWCRAQ*AEGRRG
Trigger: CCCCCTGCGTCCCTCGGCGCACTGGGCTCTACACCA...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCACCAGTTCGGCCGGGTaGTCCGCGATGATCTCCACC +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPTSSAG*SAMIST
Trigger: GGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTACGTGTGGTAGTGAGTaGTGGCGGACATGCCGAGGG +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTTCGSE*WRTCRG
Trigger: CCCTCGGCATGTCCGCCACCACTCACTACCACACGT...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGGGAGTGCTGCTGGTCTaGAAGGGTCCACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRGVLLV*KGPLWL
Trigger: AAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCC...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGACACCAGGGGACGTaGCAGTGGGGCAGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGHQGT*QWGSWA
Trigger: TGCCCAGCTGCCCCACTGCCACGTCCCCTGGTGTCC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTGAGGGCCGTGGGTTCTaGGGCGGGACACCTACTCTC +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVEGRGF*GGTPTL
Trigger: GAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTC...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGGGCCAGGCTCCTCTaGGGACAGGAACAGGGTGGT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGARLL*GQEQGG
Trigger: ACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGATGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GGCTGGAGGAGCACAGGGCTTTGGGGAGGTTCCAGGATGTTCAGCATGATCATCTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: GWRSTGLWGGSRMFSMIICCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...GATGATCATGCTGAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp ATGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGGTGGAGTGGATGACGCCAGAGCCTTCTTaGAGTCTTCCTGGAGAAAGT +
Preference number: 4 (lower is better)
Translates to: MAGSPVPRVEDSGVVEWMTPEPS*SLPGES
Trigger: ACTTTCTCCAGGAAGACTGCAAGAAGGCTCTGGCGT...CATCCACTCCACCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGAGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp GTAAGCGGGTCTGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCATGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: VSGSAECTGCHTAEAVVSWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...TGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCAGACCCGCTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCTGGAAGGGTCCACTCTaGCTTTGGGAAGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPWKGPL*LWEEPG
Trigger: CCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCA...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGGTGGGACCATCCTaGAAGGAGACCGGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLMVGPS*KETGLP
Trigger: GGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTGCTGGGTTCTGAATCCCGGGCTGCCTGGGATTTCTTaGTTCCCGGGGACCGTCCAC +
Preference number: 4 (lower is better)
Translates to: GTGWWKTVSPRCWVLNPGLPGIS*FPGTVH
Trigger: GTGGACGGTCCCCGGGAACCAAGAAATCCCAGGCAG...CCCGGGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTAGGGACGCAGGGGGCTaGCACTGTGGAGGCAGTGGA +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVRDAGG*HCGGSG
Trigger: TCCACTGCCTCCACAGTGCCAGCCCCCTGCGTCCCT...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCAGGGGACGTGGCAGTaGGGCAGCTGGGCATCCAGT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLQGTWQ*GSWASS
Trigger: ACTGGATGCCCAGCTGCCCCACTGCCACGTCCCCTG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGTGGCAGCAGCGGCTaGAGGAGCACAGGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGGSSG*RSTGLW
Trigger: CCAAAGCCCTGTGCTCCTCCAGCCGCTGCTGCCACC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
3UTR CAA 72 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTaGGCTGGGGGTTCGCTGGACTGGGAAGGGAATGAT +
Preference number: 4 (lower is better)
Translates to: FLTIGPPLPSAR*AGGSLDWEGND
Trigger: ATCATTCCCTTCCCAGTCCAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp CATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATTGGGAACTGATAGGATGCACGGTGTCACTGCGCTaGAGAGGCTGTTTGACGCCA +
Preference number: 4 (lower is better)
Translates to: HPGRRPVSPGYHWELIGCTVSLR*RGCLTP
Trigger: TGGCGTCAAACAGCCTCTTCAGCGCAGTGACACCGT...GCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp TTTCTGACGATAGGACCTCCTCTCCCCTCCGCTCGCTTGGCTGGGGGTTCGCTGCTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: FLTIGPPLPSARLAGGSLLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...CAGCGAACCCCCAGCCAAGCGAGCGGAGGGGAGAGGAGGTCCTATCGTCAGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGAGGGCCGTGGGTTCTaGGGCGGGACACCTACTCTC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNEGRGF*GGTPTL
Trigger: GAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTGCAGGGCCTGCATGCTaGCTGTGGCCCCTCTCTGAA +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVAGPAC*LWPLSE
Trigger: TTCAGAGAGGGGCCACAGTCAGCATGCAGGCCCTGC...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGATCCCTGGCAGGGCCTaGATGCTGACTGTGGCCCCT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLIPGRA*MLTVAP
Trigger: AGGGGCCACAGTCAGCATGCAGGCCCTGCCAGGGAT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp GTAGAGGGGCCAGGCTCCTCTGAGGACAGGAACAGGGTGGTGGAAGACTGTGAGAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: VEGPGSSEDRNRVVEDCENHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...CTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCCTCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp GTAAGCGGGTCTGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAGGAGTGCTGCTGGTCTaGAAGGGTCCACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: VSGSAECTGCHTAEAVVSGVLLV*KGPLWL
Trigger: AAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCC...TGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCAGACCCGCTTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGGAGAGGGGGCAACATaGGGCTGGGAGAGAAGGGCT +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLGEGAT*GWERRA
Trigger: AGCCCTTCTCTCCCAGCCCCATGTTGCCCCCTCTCC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGGCCGGGGCCATCATaGTCTGTGGCCGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGPGPS*SVAAHD
Trigger: ATCATGAGCGGCCACAGACCATGATGGCCCCGGCCC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTGCTCTCAGTGAGGGATaGAATGCTTGGGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTALSEG*NAWELP
Trigger: AGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGC...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTGCTTCAGGCACAGGCTaGGACTGGGGCACCAGAGAA +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVASGTG*DWGTRE
Trigger: TTCTCTGGTGCCCCAGTCTCAGCCTGTGCCTGAAGC...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACTCACGTCGCTCATCTTaGCGGGCTGCAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDSRRSS*RAAGCW
Trigger: CCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGA...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTCACGTCGCTCATCTTaGCGGGCTGCAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNSRRSS*RAAGCW
Trigger: CCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGAGTGGTGGCGGACATaGCGAGGGACATGCCTGACG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNEWWRT*RGTCLT
Trigger: CGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATACCAGTTCGGCCGGGTaGTCCGCGATGATCTCCACC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNTSSAG*SAMIST
Trigger: GGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCTGAAGCACCTGCCTaGCTCTTCTTACTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRSEAPA*LFLLRE
Trigger: CTCTCTCAGTAAGAAGAGCCAGGCAGGTGCTTCAGA...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTTGGGTAGTGCATTCGTaGGTTGGAGAAGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLWVVHS*VGEAAL
Trigger: GAGAGCCGCTTCTCCAACCCACGAATGCACTACCCA...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTAGGGGGCTGGCACTGTaGAGGCAGTGGACAGAGGCT +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFRGLAL*RQWTEA
Trigger: AGCCTCTGTCCACTGCCTCCACAGTGCCAGCCCCCT...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGATGTCCCCAACACTaGCCTCCAAGGTGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLGCPQH*PPRWQQ
Trigger: CTGCTGCCACCTTGGAGGCCAGTGTTGGGGACATCC...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GTCAAGGTGAAACTCTTGCCTCGTCCGCTCCGGCCCACAAATCTCAGATCGTTGACGGTGTCACTGCGCTaGAGAGGCTGTTTGACGCCA +
Preference number: 4 (lower is better)
Translates to: VKVKLLPRPLRPTNLRSLTVSLR*RGCLTP
Trigger: TGGCGTCAAACAGCCTCTTCAGCGCAGTGACACCGT...CAACGATCTGAGATTTGTGGGCCGGAGCGGACGAGGCAAGAGTTTCACCTTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS-3UTR TCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTGCGCCCTAAATCACTaGGGCGATCAGAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTCALNH*GDQRTN
Trigger: GTTTGTTCTCTGATCGCCTCAGTGATTTAGGGCGCA...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp GCCCTCAACCACGAAGCCTGCAATTTAGAGTTTTGCTCAACTCAGAGACCACAGGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: ALNHEACNLEFCSTQRPQAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...CTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGGTGGTGGAAGACTGTaGGTCCAAGGTGCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLGGGRL*VQGAGF
Trigger: GAACCCAGCACCTTGGACTCACAGTCTTCCACCACC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTCCAGGATGTTCAGCATaGTCATCCCTGGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVPGCSA*SSLAGP
Trigger: AGGCCCTGCCAGGGATGATCATGCTGAACATCCTGG...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAATGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLRDMEC*WSGRVH
Trigger: GTGGACCCTTCCAGACCAGCAGCACTCCATATCTCT...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTAAACAGTTGGGGAACTaGTGTGGCTTCCGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLKQLGN*CGFRQR
Trigger: ACGCTGACGGAAGCCACAGCAGTTCCCCAACTGTTT...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRWIKRT*CRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCA...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGGGCAGAAGTCAGAGGTaGCAGTGTCATCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRGRSQR*QCHHLK
Trigger: TTTCAGATGATGACACTGCCACCTCTGACTTCTGCC...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGATGTGGTAGTGAGTGGTaGCGGACATGCCGAGGGACA +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRCGSEW*RTCRGT
Trigger: TGTCCCTCGGCATGTCCGCCACCACTCACTACCACA...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACACGTGTGGTAGTGAGTaGTGGCGGACATGCCGAGGG +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENTCGSE*WRTCRG
Trigger: CCCTCGGCATGTCCGCCACCACTCACTACCACACGT...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGTGGAAGGGTCCACTCTaGCTTTGGGAAGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQWKGPL*LWEEPG
Trigger: CCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCA...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGGAAGGGTCCACTCTaGCTTTGGGAAGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNWKGPL*LWEEPG
Trigger: CCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATATGGTGGGACCATCCTaGAAGGAGACCGGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNMVGPS*KETGLP
Trigger: GGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCTGGGAGAGAAGGGCTaGGGCTCACAGGACGAGGAT +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFLGEKG*GSQDED
Trigger: ATCCTCGTCCTGTGAGCCCCAGCCCTTCTCTCCCAG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGGAGGAGGTCACAATaGTGTAGAGCCCAGTGCGCC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFGRRSQ*CRAQCA
Trigger: GGCGCACTGGGCTCTACACCATTGTGACCTCCTCCC...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTGGGGTGCAGCCTCTaGGGAGGAGGTCACAATGGT +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFVGCSL*GGGHNG
Trigger: ACCATTGTGACCTCCTCCCCAGAGGCTGCACCCCAC...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTATCCAGTCAACAAGGTaGGGTGCAGCCTCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLIQSTR*GAASGE
Trigger: CTCCCCAGAGGCTGCACCCCACCTTGTTGACTGGAT...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGGCCATCATGGTCTGTaGCCGCTCATGATCCTTGCC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLGHHGL*PLMILA
Trigger: GGCAAGGATCATGAGCGGCCACAGACCATGATGGCC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTCAGCATGATCATCCCTaGCAGGGCCTGCATGCTGAC +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVQHDHP*QGLHAD
Trigger: GTCAGCATGCAGGCCCTGCCAGGGATGATCATGCTG...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATACGGTGTCACTGCGCTaGAGAGGCTGTTTGACGCCA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNTVSLR*RGCLTP
Trigger: TGGCGTCAAACAGCCTCTTCAGCGCAGTGACACCGT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTACGGTGTCACTGCGCTaGAGAGGCTGTTTGACGCCA +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFTVSLR*RGCLTP
Trigger: TGGCGTCAAACAGCCTCTTCAGCGCAGTGACACCGT...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAACGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp GTAGAGGGGCCAGGCTCCTCTGAGGACAGGAACAGGGTGGTGGAAGACTGTGAGCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: VEGPGSSEDRNRVVEDCELGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...CTCACAGTCTTCCACCACCCTGTTCCTGTCCTCAGAGGAGCCTGGCCCCTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPICRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGTGCCGCCGCTGCTGCTaGGGCCGCCTCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGCRRCC*GRLLLL
Trigger: CAGCAGCAGGAGGCGGCCGCAGCAGCAGCGGCGGCA...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGATGTCATCTGGCTCAGATAGGAGGGGTAAGACTGGTCATAGGACCACGGTGAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: GMSSGSDRRGKTGHRTTVNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...CACCGTGGTCCTATGACCAGTCTTACCCCTCCTATCTGAGCCAGATGACATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTCACCTACTCTCATACTaGGATGAGGAATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLHLLSY*DEECAL
Trigger: TAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTG...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: NKGGQRETTCFQNCFWVAARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTGGCAGAAGTCAGAGGTaGCAGTGTCATCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTGRSQR*QCHHLK
Trigger: TTTCAGATGATGACACTGCCACCTCTGACTTCTGCC...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGATGCTTGGGAACTGCCTaGGGTCTGAAAAAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRCLGTA*GLKKGP
Trigger: TGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCA...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACTGTGGTAGTGAGTGGTaGCGGACATGCCGAGGGACA +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENCGSEW*RTCRGT
Trigger: TGTCCCTCGGCATGTCCGCCACCACTCACTACCACA...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGGAGTGCTGCTGGTCTaGAAGGGTCCACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNGVLLV*KGPLWL
Trigger: AAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCGACTTCCTGGAAAGCTGCTGGGGGCCCTCCTTGGGTAAGGCACTTTTTGGGTGATATGGAGTGCTGCTaGTCTGGAAGGGTCCACTCT +
Preference number: 4 (lower is better)
Translates to: STSWKAAGGPPWVRHFLGDMECC*SGRVHS
Trigger: AGAGTGGACCCTTCCAGACCAGCAGCACTCCATATC...ACCCAAAAAGTGCCTTACCCAAGGAGGGCCCCCAGCAGCTTTCCAGGAAGTCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCTGCCATTCGAGGTaGTGGTGCATGGTGGGACCA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCCHSR*WCMVGP
Trigger: TGGTCCCACCATGCACCACCACCTCGAATGGCAGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACTCTGTCCTTGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCGTGGCTCGGTTGGTCTCGGTaGCTGGTAGTGACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: TLSLWIKRTWCRVQGGPWLGWSR*LVVTCR
Trigger: TCTGCAGGTCACTACCAGCCACCGAGACCAACCGAG...CCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGGACGAGGATGGAGATaGCAGAGCTGCTGTAGAGGG +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFGRGWR*QSCCRG
Trigger: CCCTCTACAGCAGCTCTGCCATCTCCATCCTCGTCC...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCTCACAGGACGAGGATaGAGATGGCAGAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLLTGRG*RWQSCC
Trigger: ACAGCAGCTCTGCCATCTCCATCCTCGTCCTGTGAG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTAGGAGCACAGGGCTTTaGGGAGGTTCCAGGATGTTC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLRSTGL*GGSRMF
Trigger: GAACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCT...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
3UTR CAA 72 bp CCACAGGTTCTGTTGTCTACTGACATCAGCTACCGGTaGCTACTTCAGCTGACCAGTTCCCCGAGGACAGCG +
Preference number: 4 (lower is better)
Translates to: PQVLLSTDISYR*LLQLTSSPRTA
Trigger: CGCTGTCCTCGGGGAACTGGTCAGCTGAAGTAGCAACCGGTAGCTGATGTCAGTAGACAACAGAACCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CAA 72 bp CCATCCTGGAAGGAGACCGGTCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTGACGAAGTACCATAGT +
Preference number: 4 (lower is better)
Translates to: PSWKETGLPRVP*GTDRMLTKYHS
Trigger: ACTATGGTACTTCGTCAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAGACCGGTCTCCTTCCAGGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR TCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGACCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp CTCTCCTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: LSFLPDPESTSLNRRGNRQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...CCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCGAGGGCCGTGGGTTCTaGGGCGGGACACCTACTCTC +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSEGRGF*GGTPTL
Trigger: GAGAGTAGGTGTCCCGCCTCAGAACCCACGGCCCTC...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGGTAAGTGGCCACGCTGAAGAGGCTGTTTaGCGCCATAGTCCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: WFPGTVHCHFNSSVVSGHAEEAV*RHSPSF
Trigger: AAAGGAGGGACTATGGCGTCAAACAGCCTCTTCAGC...GTGGCCACTTACCACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS-3UTR GCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGATGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGAAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRRDMEC*WSGRVH
Trigger: GTGGACCCTTCCAGACCAGCAGCACTCCATATCTCT...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTTTGGATTTAATAGCGTaGTGCCATTCGAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLLDLIA*CHSRWW
Trigger: CCACCACCTCGAATGGCAGCACGCTATTAAATCCAA...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CCTGGCTACTTGGTTTTTCATAACAGCGGAGGCATTTCGGAGCTCGGCGGAGTAAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: PGYLVFHNSGGISELGGVNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...TACTCCGCCGAGCTCCGAAATGCCTCCGCTGTTATGAAAAACCAAGTAGCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTLTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGCCCGGTGCCCCGTGTaGAAGACAGCGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGARCPV*KTAAWW
Trigger: CCACCACGCCGCTGTCTTCCACACGGGGCACCGGGC...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGCTTGGGAACTGCCTaGGGTCTGAAAAAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNCLGTA*GLKKGP
Trigger: TGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACTGGGTAGTGCATTCGTaGGTTGGAGAAGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENWVVHS*VGEAAL
Trigger: GAGAGCCGCTTCTCCAACCCACGAATGCACTACCCA...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTGGGTAGTGCATTCGTaGGTTGGAGAAGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNWVVHS*VGEAAL
Trigger: GAGAGCCGCTTCTCCAACCCACGAATGCACTACCCA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTACCATAGTAGAGATATaGAGTGCTGCTGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTTIVEI*SAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGT...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCCCTCAACCACGAAGCCTGCAATTTAGAGTTTTGCTCAACTCAGAGACCACAGATGGTGGGACCATCCTaGAAGGAGACCGGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: ALNHEACNLEFCSTQRPQMVGPS*KETGLP
Trigger: GGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT...CTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGTTGGGGAACTGCTGTaGCTTCCGTCAGCGTCAACA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNVGELL*LPSAST
Trigger: TGTTGACGCTGACGGAAGCCACAGCAGTTCCCCAAC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
3UTR CAA 72 bp GGCTCTGGGACCAGAGAGCCCTTTCCTGCTACTCGCTaGAGAAACAAAGCCTTCCCTCCTCCCAACTTGAAA +
Preference number: 4 (lower is better)
Translates to: GSGTREPFPATR*RNKAFPPPNLK
Trigger: TTTCAAGTTGGGAGGAGGGAAGGCTTTGTTTCTCAAGCGAGTAGCAGGAAAGGGCTCTCTGGTCCCAGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTGCGCCCTAAATCACTaGGGCGATCAGAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLCALNH*GDQRTN
Trigger: GTTTGTTCTCTGATCGCCTCAGTGATTTAGGGCGCA...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGCTCTCAGTGAGGGATaGAATGCTTGGGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNALSEG*NAWELP
Trigger: AGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAGAAGCGGCTCTCAGTaGGGGATGAAATGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNRSGSQ*GMKCLG
Trigger: TCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp TCCAAGCCATGCCTGAGCCTTTACCACACGCGTGGCTTTCAGCTGACTAGGCCCGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: SKPCLSLYHTRGFQLTRPELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...GGGCCTAGTCAGCTGAAAGCCACGCGTGTGGTAAAGGCTCAGGCATGGCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCCCCC*AATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGACCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRPQSGH*GRRRCC
Trigger: GCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGG...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTAGAAGATCCAGCTCTTTTAAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: RGCVVPSASLCLEDPALLSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...TAAAAGAGCTGGATCTTCTAAACAAAGGGATGCTGAGGGTACCACACATCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNRDMEC*WSGRVH
Trigger: GTGGACCCTTCCAGACCAGCAGCACTCCATATCTCT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAAACAGTTGGGGAACTaGTGTGGCTTCCGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNKQLGN*CGFRQR
Trigger: ACGCTGACGGAAGCCACAGCAGTTCCCCAACTGTTT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCACCAGTTCGGCCGGGTaGTCCGCGATGATCTCCACC +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSTSSAG*SAMIST
Trigger: GGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CTTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: LPPRPRVHLSEPAWEQVTLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...AGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CCA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAAAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp TCGACTTCCTGGAAAGCTGCTGGGGGCCCTCCTTGGGTAAGGCACTTTTTGGGTGGCAGAAGTCAGAGGTaGCAGTGTCATCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: STSWKAAGGPPWVRHFLGGRSQR*QCHHLK
Trigger: TTTCAGATGATGACACTGCCACCTCTGACTTCTGCC...ACCCAAAAAGTGCCTTACCCAAGGAGGGCCCCCAGCAGCTTTCCAGGAAGTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CAA 72 bp TTGCCTCGTCCGCTCCGGCCCACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: LPRPLRPTNLRS*NLATWFFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGTGGGCCGGAGCGGACGAGGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GGAGGTGGACACACCATCAGCATCTCAAGAAAGGGATGCTGGAGGGGCCCCAGACAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: GGGHTISISRKGCWRGPRQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...TCTGGGGCCCCTCCAGCATCCCTTTCTTGAGATGCTGATGGTGTGTCCACCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp GACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: DGIRGVSEDVWYPQHPFVLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...AACAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp TCGACTTCCTGGAAAGCTGCTGGGGGCCCTCCTTGGGTAAGGCACTTTTTGGGTCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 4 (lower is better)
Translates to: STSWKAAGGPPWVRHFLGLGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...ACCCAAAAAGTGCCTTACCCAAGGAGGGCCCCCAGCAGCTTTCCAGGAAGTCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGCCGAGGGACATGCCTaGCGTGACTGGCGGGGTGTA +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGAEGHA*RDWRGV
Trigger: TACACCCCGCCAGTCACGTCAGGCATGTCCCTCGGC...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTTCACGTCGCTCATCTTaGCGGGCTGCAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: NKGGQRETTCFQNCFWVASRRSS*RAAGCW
Trigger: CCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGA...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTCACGTCGCTCATCTTaGCGGGCTGCAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSRRSS*RAAGCW
Trigger: CCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGMVRLS*GGLNRG
Trigger: GCCCCGATTGAGGCCGCCGCACGACAACCGCACCAT...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: NKGGQRETTCFQNCFWVASWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGTGGCAGGTAGCCCGGTaGCCCGTGTGGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLWQVAR*PVWKTA
Trigger: CGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCA...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGAAATGCTTGGGAACTaGCTGGGGTCTGAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNEMLGN*LGSEKG
Trigger: CCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGAGTGGTGGCGGACATaGCGAGGGACATGCCTGACG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGEWWRT*RGTCLT
Trigger: CGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGACCAGTTCGGCCGGGTaGTCCGCGATGATCTCCACC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGTSSAG*SAMIST
Trigger: GGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCACCTACTCTCATACTaGGATGAGGAATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNHLLSY*DEECAL
Trigger: TAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCACCTACTCTCATACTaGGATGAGGAATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFHLLSY*DEECAL
Trigger: TAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CGAGGATGTGTGGTACCCTCAGCATCCCTTTGTTTAGAAGATCCAGCTCTTTTATGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: RGCVVPSASLCLEDPALLWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...TAAAAGAGCTGGATCTTCTAAACAAAGGGATGCTGAGGGTACCACACATCCTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACTCTGAAGCACCTGCCTaGCTCTTCTTACTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENSEAPA*LFLLRE
Trigger: CTCTCTCAGTAAGAAGAGCCAGGCAGGTGCTTCAGA...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGTAGGTAAAGGTGGCTaGGTAGTGCATTCGTGGGTT +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNVGKGG*VVHSWV
Trigger: AACCCACGAATGCACTACCCAGCCACCTTTACCTAC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCACGTGTGGTAGTGAGTaGTGGCGGACATGCCGAGGG +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSTCGSE*WRTCRG
Trigger: CCCTCGGCATGTCCGCCACCACTCACTACCACACGT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGATGGAAGGGTCCACTCTaGCTTTGGGAAGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARWKGPL*LWEEPG
Trigger: CCCCGGCTCTTCCCAAAGCCAGAGTGGACCCTTCCA...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGT +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTIPGGPR*SPPWCG
Trigger: ACCGCACCATGGTGGAGATCATCGCGGACCACCCGG...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGCGAGGGCTACAACCTTaGAGGCCACGGGCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWRGLQP*RPRAGS
Trigger: AGACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCG...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 4 (lower is better)
Translates to: KTGSEESARMCGTLSIPLLGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGCCTGGCTCTTCTTACTaGGAGAGGAAGGCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKPGSSY*ERKARG
Trigger: GCCTCTGGCCTTCCTCTCTCAGTAAGAAGAGCCAGG...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGAGTGGTGGCGGACATaGCGAGGGACATGCCTGACG +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGEWWRT*RGTCLT
Trigger: CGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTC...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACTTGGATTTAATAGCGTaGTGCCATTCGAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDLDLIA*CHSRWW
Trigger: CCACCACCTCGAATGGCAGCACGCTATTAAATCCAA...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTTGGATTTAATAGCGTaGTGCCATTCGAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNLDLIA*CHSRWW
Trigger: CCACCACCTCGAATGGCAGCACGCTATTAAATCCAA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CCTGGCTACTTGGTTTTTCATAACAGCGGAGGCATTTCGGAGCTCGGCGGAGTATTCCTGGAGAAAGTTTaGACCGCACTTGTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: PGYLVFHNSGGISELGGVFLEKV*TALVVL
Trigger: CAGAACCACAAGTGCGGTGCAAACTTTCTCCAGGAA...TACTCCGCCGAGCTCCGAAATGCCTCCGCTGTTATGAAAAACCAAGTAGCCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR GCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGGGGGAAGACTGTGCCTaGCTGGGATCTCGTCCGCTC +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLGEDCA*LGSRPL
Trigger: GAGCGGACGAGATCCCAGGCAGGCACAGTCTTCCCC...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGCGGTGGGGAAGACTGTaGCTGCCTGGGATCTCGTCC +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLRWGRL*LPGISS
Trigger: GGACGAGATCCCAGGCAGGCACAGTCTTCCCCACCG...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCGTTCAGGGAGGGCCGTaGGTTCTGAGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTIVQGGP*VLRRDT
Trigger: GGTGTCCCGCCTCAGAACCCACGGCCCTCCCTGAAC...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFWIKRT*CRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCA...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLLTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTTGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGGCAGAAGTCAGAGGTaGCAGTGTCATCATCTGAAA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNGRSQR*QCHHLK
Trigger: TTTCAGATGATGACACTGCCACCTCTGACTTCTGCC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTGCTTGGGAACTGCCTaGGGTCTGAAAAAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLCLGTA*GLKKGP
Trigger: TGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCA...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGTGTGGTAGTGAGTGGTaGCGGACATGCCGAGGGACA +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKCGSEW*RTCRGT
Trigger: TGTCCCTCGGCATGTCCGCCACCACTCACTACCACA...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTGTGGTAGTGAGTGGTaGCGGACATGCCGAGGGACA +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSCGSEW*RTCRGT
Trigger: TGTCCCTCGGCATGTCCGCCACCACTCACTACCACA...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGACGTGTGGTAGTGAGTaGTGGCGGACATGCCGAGGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGTCGSE*WRTCRG
Trigger: CCCTCGGCATGTCCGCCACCACTCACTACCACACGT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGGAGTGCTGCTGGTCTaGAAGGGTCCACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARGVLLV*KGPLWL
Trigger: AAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGATGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGGTTGGGGAACTGCTGTaGCTTCCGTCAGCGTCAACA +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLVGELL*LPSAST
Trigger: TGTTGACGCTGACGGAAGCCACAGCAGTTCCCCAAC...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACTCTGTCCTTGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCGTGGTTCTTGCAGTCTTCCTaGAGAAAGTTTGCACCGCAC +
Preference number: 4 (lower is better)
Translates to: TLSLWIKRTWCRVQGGPWFLQSS*RKFAPH
Trigger: GTGCGGTGCAAACTTTCTCCAGGAAGACTGCAAGAA...CCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGTGAGTCCAAGGTGCTaGGTTCTGAATCTGAAATAC +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLVSPRC*VLNLKY
Trigger: GTATTTCAGATTCAGAACCCAGCACCTTGGACTCAC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCTATGATGTCCAGATaGCCATTCATTGTCCGTAGC +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFAMMSR*PFIVRS
Trigger: GCTACGGACAATGAATGGCCATCTGGACATCATAGC...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
3UTR CAA 72 bp CAGATACCAATGGGTACATGGCCTTCCCTGCTCTTGTaGGCCCTGCCTAATGAAAGCCTCCAATGTCAAAGG +
Preference number: 4 (lower is better)
Translates to: QIPMGTWPSLLL*ALPNESLQCQR
Trigger: CCTTTGACATTGGAGGCTTTCATTAGGCAGGGCCAACAAGAGCAGGGAAGGCCATGTACCCATTGGTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CAA 72 bp TGGCAGATACCAATGGGTACATGGCCTTCCCTGCTCTaGTTGGCCCTGCCTAATGAAAGCCTCCAATGTCAA +
Preference number: 4 (lower is better)
Translates to: WQIPMGTWPSLL*LALPNESLQCQ
Trigger: TTGACATTGGAGGCTTTCATTAGGCAGGGCCAACAAGAGCAGGGAAGGCCATGTACCCATTGGTATCTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TGCAGAGTGTACCGGCTGCCACACAGCAGAGGCTGTGGTTTCAAAGCACAGAGACAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: CRVYRLPHSRGCGFKAQRQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...TCTCTGTGCTTTGAAACCACAGCCTCTGCTGTGTGGCAGCCGGTACACTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNLGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTCCTGGCTCTTCTTACTaGGAGAGGAAGGCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGPGSSY*ERKARG
Trigger: GCCTCTGGCCTTCCTCTCTCAGTAAGAAGAGCCAGG...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTACTGTGAGTCCAAGGTaGTGGGTTCTGAATCTGAAA +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFTVSPR*WVLNLK
Trigger: TTTCAGATTCAGAACCCAGCACCTTGGACTCACAGT...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATTGGAAGACAGCGGCGTaGTGGAGTGGATGGATGGGG +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNWKTAA*WSGWMG
Trigger: CCCCATCCATCCACTCCACCACGCCGCTGTCTTCCA...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGATGCTTGGGAACTGCCTaGGGTCTGAAAAAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARCLGTA*GLKKGP
Trigger: TGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCA...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCCCTCAACCACGAAGCCTGCAATTTAGAGTTTTGCTCAACTCAGAGACCACAGGTAGGTAAAGGTGGCTaGGTAGTGCATTCGTGGGTT +
Preference number: 4 (lower is better)
Translates to: ALNHEACNLEFCSTQRPQVGKGG*VVHSWV
Trigger: AACCCACGAATGCACTACCCAGCCACCTTTACCTAC...CTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGTGGTAGTGAGTGGTaGCGGACATGCCGAGGGACA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCGSEW*RTCRGT
Trigger: TGTCCCTCGGCATGTCCGCCACCACTCACTACCACA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGACGTGTGGTAGTGAGTaGTGGCGGACATGCCGAGGG +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLTCGSE*WRTCRG
Trigger: CCCTCGGCATGTCCGCCACCACTCACTACCACACGT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGGAGTGCTGCTGGTCTaGAAGGGTCCACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGGVLLV*KGPLWL
Trigger: AAGCCAGAGTGGACCCTTCCAGACCAGCAGCACTCC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACACCATAGTAGAGATATaGAGTGCTGCTGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDTIVEI*SAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGT...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTATGAAAACACCATAGTAGAGATATaGAGTGCTGCTGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: RPRVHLSEPAWEQVTYENTIVEI*SAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGT...GTTTTCATAAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATATGGTGGGACCATCCTaGAAGGAGACCGGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNMVGPS*KETGLP
Trigger: GGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCATGGTGGGACCATCCTaGAAGGAGACCGGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIMVGPS*KETGLP
Trigger: GGGGAGACCGGTCTCCTTCCAGGATGGTCCCACCAT...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGCTGCCATTCGAGGTaGTGGTGCATGGTGGGACCA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCCHSR*WCMVGP
Trigger: TGGTCCCACCATGCACCACCACCTCGAATGGCAGCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGTTGGGGAACTGCTGTaGCTTCCGTCAGCGTCAACA +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARVGELL*LPSAST
Trigger: TGTTGACGCTGACGGAAGCCACAGCAGTTCCCCAAC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR CAA 72 bp CTGTGCCTGCCTGGGATCTGTAATCTGACTCTGTCCTaGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: LCLPGICNLTLS*WIKRTWCRVQG
Trigger: TCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAGATTACAGATCCCAGGCAGGCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
3UTR CAA 72 bp CTGGACTGGGAAGGGAATGATACCTTTCCAATCACCTaGTCCCTGGAACTTCTCGGGGTGCTTCTTCTATTG +
Preference number: 4 (lower is better)
Translates to: LDWEGNDTFPIT*SLELLGVLLLL
Trigger: CAATAGAAGAAGCACCCCGAGAAGTTCCAGGGACAAGGTGATTGGAAAGGTATCATTCCCTTCCCAGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR TCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGACGGTGTCACTGCGCTaGAGAGGCTGTTTGACGCCA +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGTVSLR*RGCLTP
Trigger: TGGCGTCAAACAGCCTCTTCAGCGCAGTGACACCGT...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp AAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: KDGIRGVSEDVWYPQHPFQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...AAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR TCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGACTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCCTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTGCGCCCTAAATCACTaGGGCGATCAGAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLCALNH*GDQRTN
Trigger: GTTTGTTCTCTGATCGCCTCAGTGATTTAGGGCGCA...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCCCTGGCTCTTCTTACTaGGAGAGGAAGGCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIPGSSY*ERKARG
Trigger: GCCTCTGGCCTTCCTCTCTCAGTAAGAAGAGCCAGG...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAAGAAGCGGCTCTCAGTaGGGGATGAAATGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARRSGSQ*GMKCLG
Trigger: TCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCT...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAGAGTGGTGGCGGACATaGCGAGGGACATGCCTGACG +
Preference number: 4 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGREWWRT*RGTCLT
Trigger: CGTCAGGCATGTCCCTCGGCATGTCCGCCACCACTC...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSRDMEC*WSGRVH
Trigger: GTGGACCCTTCCAGACCAGCAGCACTCCATATCTCT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCAAACAGTTGGGGAACTaGTGTGGCTTCCGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSKQLGN*CGFRQR
Trigger: ACGCTGACGGAAGCCACAGCAGTTCCCCAACTGTTT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGCACCTACTCTCATACTaGGATGAGGAATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLHLLSY*DEECAL
Trigger: TAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTG...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATGTCATAGGACCACGGTaGGGAAGACTGTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNVIGPR*GRLCLP
Trigger: AGGCAGGCACAGTCTTCCCCACCGTGGTCCTATGAC...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGGGTAGTGCATTCGTaGGTTGGAGAAGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGWVVHS*VGEAAL
Trigger: GAGAGCCGCTTCTCCAACCCACGAATGCACTACCCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATTGCCATTCGAGGTGGTaGTGCATGGTGGGACCATCC +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNCHSRW*CMVGPS
Trigger: GGATGGTCCCACCATGCACCACCACCTCGAATGGCA...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGTGCTGCCATTCGAGGTaGTGGTGCATGGTGGGACCA +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGCCHSR*WCMVGP
Trigger: TGGTCCCACCATGCACCACCACCTCGAATGGCAGCA...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
3UTR CAA 72 bp CGTGTGCATCTAAACCCAGGGAAGTGGAGGGAAGGGTaGGTTAGTACACATAAACGGCTCCAGAAGAGTAAT +
Preference number: 4 (lower is better)
Translates to: RVHLNPGKWREG*VSTHKRLQKSN
Trigger: ATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCCTTCCCTCCACTTCCCTGGGTTTAGATGCACACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCCCTGGCTCTTCTTACTaGGAGAGGAAGGCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTIPGSSY*ERKARG
Trigger: GCCTCTGGCCTTCCTCTCTCAGTAAGAAGAGCCAGG...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGCTCTCAGTGAGGGATaGAATGCTTGGGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGALSEG*NAWELP
Trigger: AGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTATCACGTCGCTCATCTTaGCGGGCTGCAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TLCLKELRLLSNISDMALSRRSS*RAAGCW
Trigger: CCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGA...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTAAGTTGGGACTGTCGGTaGGGACCAGTTCGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: TLCLKELRLLSNISDMALSWDCR*GPVRPG
Trigger: ACCCGGCCGAACTGGTCCGCACCGACAGTCCCAACT...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTCAAGCTTCTGTCTGTaGCTTCTTGGTTCCCGGGGA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSSFCL*LLGSRG
Trigger: TCCCCGGGAACCAAGAAGGCACAGACAGAAGCTTGA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATCGGTGGGGAAGACTGTaGCTGCCTGGGATCTGTAAT +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNRWGRL*LPGICN
Trigger: ATTACAGATCCCAGGCAGGCACAGTCTTCCCCACCG...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGAAATGCTTGGGAACTaGCTGGGGTCTGAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVAREMLGN*LGSEKG
Trigger: CCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGAGAGATATGGAGTGCTaGTGGTCTGGAAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGRDMEC*WSGRVH
Trigger: GTGGACCCTTCCAGACCAGCAGCACTCCATATCTCT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCCATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTIHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTGGATTTAATAGCGTaGTGCCATTCGAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLLDLIA*CHSRWW
Trigger: CCACCACCTCGAATGGCAGCACGCTATTAAATCCAA...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGAAACAGTTGGGGAACTaGTGTGGCTTCCGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGKQLGN*CGFRQR
Trigger: ACGCTGACGGAAGCCACAGCAGTTCCCCAACTGTTT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCGTAGGTAAAGGTGGCTaGGTAGTGCATTCGTGGGTT +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSVGKGG*VVHSWV
Trigger: AACCCACGAATGCACTACCCAGCCACCTTTACCTAC...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGATATGGAGTGCTGCTaGTCTGGAAGGGTCCACTCT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGDMECC*SGRVHS
Trigger: AGAGTGGACCCTTCCAGACCAGCAGCACTCCATATC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATGTTGGGGAACTGCTGTaGCTTCCGTCAGCGTCAACA +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNVGELL*LPSAST
Trigger: TGTTGACGCTGACGGAAGCCACAGCAGTTCCCCAAC...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGACTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTTGCGCCCTAAATCACTaGGGCGATCAGAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: NKGGQRETTCFQNCFWVACALNH*GDQRTN
Trigger: GTTTGTTCTCTGATCGCCTCAGTGATTTAGGGCGCA...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGCGCCCTAAATCACTaGGGCGATCAGAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGCALNH*GDQRTN
Trigger: GTTTGTTCTCTGATCGCCTCAGTGATTTAGGGCGCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 4 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLLGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR TCA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGAGAAGCGGCTCTCAGTaGGGGATGAAATGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWRSGSQ*GMKCLG
Trigger: TCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCT...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATAGAAGCGGCTCTCAGTaGGGGATGAAATGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNRSGSQ*GMKCLG
Trigger: TCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCT...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCATGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACC +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSCCCCC*CCAATT
Trigger: GGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCA...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGAAATGCTTGGGAACTaGCTGGGGTCTGAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGEMLGN*LGSEKG
Trigger: CCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGATTTAATAGCGTGCTaGCATTCGAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGDLIAC*HSRWWC
Trigger: GCACCACCACCTCGAATGGCAGCACGCTATTAAATC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCACCTACTCTCATACTaGGATGAGGAATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGHLLSY*DEECAL
Trigger: TAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CCA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTTCTGAAGCACCTGCCTaGCTCTTCTTACTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGSEAPA*LFLLRE
Trigger: CTCTCTCAGTAAGAAGAGCCAGGCAGGTGCTTCAGA...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCGATATGGAGTGCTGCTaGTCTGGAAGGGTCCACTCT +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIDMECC*SGRVHS
Trigger: AGAGTGGACCCTTCCAGACCAGCAGCACTCCATATC...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAGGTGGTGGTGCATGGTaGGACCATCCTGGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRGGGAW*DHPGRR
Trigger: TCTCCTTCCAGGATGGTCCCACCATGCACCACCACC...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
3UTR CAA 72 bp CTAGGCCCTCAACCACGAAGCCTGCAATTTAGAGTTTaGCTCAACTCAGAGACCACAGAACACTTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LGPQPRSLQFRV*LNSETTEHFSA
Trigger: TGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCTAAATTGCAGGCTTCGTGGTTGAGGGCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCGCTCTCAGTGAGGGATaGAATGCTTGGGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTIALSEG*NAWELP
Trigger: AGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGC...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR GCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGATTAAAAGGACTTGGTaGAGAGTTCAGGGAGGGCCG +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGIKRTW*RVQGGP
Trigger: CGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAAT...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR GCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCGAAATGCTTGGGAACTaGCTGGGGTCTGAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIEMLGN*LGSEKG
Trigger: CCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTC...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TTGAAAGAAACAAAGGAGAGTGGACTAATGGAAGCCTGCTGGTGGAGCTTCAGCTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: LKETKESGLMEACWWSFSLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...GCTGAAGCTCCACCAGCAGGCTTCCATTAGTCCACTCTCCTTTGTTTCTTTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGWIKRT*CRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CCA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGACTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARLTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGTAGGTAAAGGTGGCTaGGTAGTGCATTCGTGGGTT +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGVGKGG*VVHSWV
Trigger: AACCCACGAATGCACTACCCAGCCACCTTTACCTAC...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTATGCTGCCATTCGAGGTaGTGGTGCATGGTGGGACCA +
Preference number: 4 (lower is better)
Translates to: TLCLKELRLLSNISDMALCCHSR*WCMVGP
Trigger: TGGTCCCACCATGCACCACCACCTCGAATGGCAGCA...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGACTGTTATGGTCAAGGTaGAACTCTTGCCTCGTCCGC +
Preference number: 4 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRLLWSR*NSCLVR
Trigger: GCGGACGAGGCAAGAGTTTCACCTTGACCATAACAG...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWLGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCTGGGATCTGTAATCTaGCTCTGTCCTTGTGGATTA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLGSVI*LCPCGL
Trigger: TAATCCACAAGGACAGAGTCAGATTACAGATCCCAG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAGCACACTTTTAGAGACCGAAGTCAACATATCATTACACTAAGAAATGTTCCACATTCGAGGTGGTGGTaGATGGTGGGACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: KHTFRDRSQHIITLRNVPHSRWW*MVGPSW
Trigger: CCAGGATGGTCCCACCATGCACCACCACCTCGAATG...TGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTCTCTAAAAGTGTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGTGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGWIKRT*CRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCA...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAAAGACAGCGGCGTGGTaGAGTGGATGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSKTAAW*SGWMGM
Trigger: CATCCCCATCCATCCACTCCACCACGCCGCTGTCTT...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACAAATCATACGTGTGACCCAGTGCAAATGAAGAGTTTAAGAGATAAGGGAAGAGATATGGAGTGCTGCTaGTCTGGAAGGGTCCACTCT +
Preference number: 4 (lower is better)
Translates to: TNHTCDPVQMKSLRDKGRDMECC*SGRVHS
Trigger: AGAGTGGACCCTTCCAGACCAGCAGCACTCCATATC...TCTTCCCTTATCTCTTAAACTCTTCATTTGCACTGGGTCACACGTATGATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGACCATAGTAGAGATATaGAGTGCTGCTGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGTIVEI*SAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCCTTGGGGAGGATTTGTaGAGACTGTTATGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: IASVTISILRKHKGGLTILGEDL*RLLWSR
Trigger: CCTTGACCATAACAGTCTTCACAAATCCTCCCCAAG...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSNHSPI*YLSEGY
Trigger: GTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATCTGACTCTGTCCTTGTaGATTAAAAGGACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNLTLSL*IKRTWC
Trigger: GCACCAAGTCCTTTTAATCCACAAGGACAGAGTCAG...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCATGGGTAGTGCATTCGTaGGTTGGAGAAGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSWVVHS*VGEAAL
Trigger: GAGAGCCGCTTCTCCAACCCACGAATGCACTACCCA...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAGTTGGGGAACTGCTGTaGCTTCCGTCAGCGTCAACA +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSVGELL*LPSAST
Trigger: TGTTGACGCTGACGGAAGCCACAGCAGTTCCCCAAC...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPIQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGCAAATCTCAGATCGTTaGACCTGGCTACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGQISDR*TWLLGF
Trigger: AAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTG...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAGCTCTCAGTGAGGGATaGAATGCTTGGGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSALSEG*NAWELP
Trigger: AGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGC...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp AAGCACACTTTTAGAGACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAAACAGTTGGGGAACTaGTGTGGCTTCCGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: KHTFRDRSQHIITLRNVPKQLGN*CGFRQR
Trigger: ACGCTGACGGAAGCCACAGCAGTTCCCCAACTGTTT...TGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTCTCTAAAAGTGTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCTTGAACCTGGCTACTTaGTTTTTCATAACAGCGGAG +
Preference number: 4 (lower is better)
Translates to: RVLLNSETTEHFSAVQPILNLAT*FFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAA...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAGAAATGCTTGGGAACTaGCTGGGGTCTGAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSEMLGN*LGSEKG
Trigger: CCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTC...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR GCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAAGTAGAGATATGGAGTaGTGCTGGTCTGGAAGGGTC +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSSRDME*CWSGRV
Trigger: GACCCTTCCAGACCAGCAGCACTCCATATCTCTACT...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTATGGATTAAAAGGACTTaGTGCAGAGTTCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: TLCLKELRLLSNISDMALWIKRT*CRVQGG
Trigger: CCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCA...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCATCTGAAGCACCTGCCTaGCTCTTCTTACTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSSEAPA*LFLLRE
Trigger: CTCTCTCAGTAAGAAGAGCCAGGCAGGTGCTTCAGA...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR TCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAACTCTCATACTGGGATaGGGAATGCGCCCTAAATCA +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSTLILG*GMRPKS
Trigger: TGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGT...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CCA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTAACCATAGTAGAGATATaGAGTGCTGCTGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: TLCLKELRLLSNISDMALTIVEI*SAAGLE
Trigger: TTCCAGACCAGCAGCACTCCATATCTCTACTATGGT...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CAA 72 bp AATTCTAAGCTTGGGAGGATCATCTTTTATTGTTTATaGCTCTCTCAGATACCATGGGTGCTTCTGCTACCA +
Preference number: 4 (lower is better)
Translates to: NSKLGRIIFYCL*LSQIPWVLLLP
Trigger: TGGTAGCAGAAGCACCCATGGTATCTGAGAGAGCAATAAACAATAAAAGATGATCCTCCCAAGCTTAGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR TCA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCAGAACTGATAGGATGCTaGCGAAGTACCATAGTAGAG +
Preference number: 4 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSELIGC*RSTIVE
Trigger: CTCTACTATGGTACTTCGTCAGCATCCTATCAGTTC...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
3UTR CAA 72 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTaGTTCCTTGGTAAAGGGGACATCTTAAATAGTAAA +
Preference number: 4 (lower is better)
Translates to: TYENRPDNTFDG*FLGKGDILNSK
Trigger: TTTACTATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS GCA 90 bp GTTGTCGTGCGGCGGCCTCAATCGGGGCACTGCGGCCGCCGCCGCTaGTGCCGCCGCCGCTGCCGCCGCTGCTGCTGCGGCCGCCTCCTG +
Preference number: 5 (lower is better)
Translates to: VVVRRPQSGHCGRRR*CRRRCRRCCCGRLL
Trigger: CAGGAGGCGGCCGCAGCAGCAGCGGCGGCAGCGGCGGCGGCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGGCCGCCGCACGACAAC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp CTCCACCATGGTGCGGTTGTCGTGCGGCGGCCTCAATCGGGGCACTaGGGCCGCCGCCGCTGCTGCCGCCGCCGCTGCCGCCGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LHHGAVVVRRPQSGH*GRRRCCRRRCRRCC
Trigger: GCAGCAGCGGCGGCAGCGGCGGCGGCAGCAGCGGCGGCGGCCGCAGTGCCCCGATTGAGGCCGCCGCACGACAACCGCACCATGGTGGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS TCA 90 bp GGAGAGAGCAACGGCTCCGAGCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGG +
Preference number: 5 (lower is better)
Translates to: GESNGSELKYAWARQ*WQVARCPVWKTAAW
Trigger: CCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGCTCGGAGCCGTTGCTCTCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS GCA 90 bp TGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTCACGTCGCTCATCTTGCCGGGCTGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*AATTGLTSLILPGC
Trigger: GCAGCCCGGCAAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp TGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTaGTGCGCAGCCACCACCGGGCTCACGTCGCTCATCTTGCCGGGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CAATTGLTSLILPG
Trigger: GCCCGGCAAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp TGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACCGGGCTCACGTCGCTCATCTTGCCG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCAATTGLTSLILP
Trigger: CGGCAAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS TCA 90 bp CCAAGGTGCTGGGTTCTGAATCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACAGCGGCGTGG +
Preference number: 5 (lower is better)
Translates to: PRCWVLNLKYAWARQ*WQVARCPVWKTAAW
Trigger: CCACGCCGCTGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGATTCAGAACCCAGCACCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS GCA 90 bp TGTTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTaGTGTTGCTGCTGCTGCGCAGCCACCACCGGGCTCACGTCGCTC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCCAATTGLTSL
Trigger: GAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp TTCCTCCCAGACCCAGAGTCCACCTCTCTGAACCGGCGTGGGAACAGGTCACTTCTCACGTCGCTCATCTaGCCGGGCTGCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: FLPDPESTSLNRRGNRSLLTSLI*PGCRLL
Trigger: CAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGAG...AAGTGACCTGTTCCCACGCCGGTTCAGAGAGGTGGACTCTGGGTCTGGGAGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS GCA 90 bp TGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTaGTGCTGCTGCGCAGCCACCACCGGGCTCACGTCGCTCATCTTG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCAATTGLTSLIL
Trigger: CAAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp TGTTGTTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTaGTGCTGTTGCTGCTGCTGCGCAGCCACCACCGGGCTCACGTCG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCCCAATTGLTS
Trigger: CGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCAACAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp TGCTGTTGTTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTaGTGCTGCTGTTGCTGCTGCTGCGCAGCCACCACCGGGCTCACG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCCCCAATTGLT
Trigger: CGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCAACAACAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 90 bp TGCTGCTGTTGTTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTaGTGCTGCTGCTGTTGCTGCTGCTGCGCAGCCACCACCGGGCTC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCCCCCAATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCAACAACAGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: KTGSEESARMCGTLSIPLPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATGGGTCCACTCTGGCTTaGGGAAGAGCCGGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNGSTLA*GRAGVG
Trigger: CCCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCC...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS CCA 90 bp GTAGTTCTCATCATTCCCGGCCATGACGGTAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTACAACCTTGAAGGCCACGGGCAGGGT +
Preference number: 5 (lower is better)
Translates to: VVLIIPGHDGNHSPI*YLSEGYNLEGHGQG
Trigger: ACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTTACCGTCATGGCCGGGAATGATGAGAACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162130.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CCGGGGCCATCATGGTCTGTGGCCGCTCATGATCCTTGCCTCGGACACCAGGGGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: PGPSWSVAAHDPCLGHQGTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CCCCTGGTGTCCGAGGCAAGGATCATGAGCGGCCACAGACCATGATGGCCCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATTCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CAA 90 bp GTGGAAGACAGCGGCGTGGTGGAGTGGATGGATGGGGATGTCATCTGGCTCAGAACCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: VEDSGVVEWMDGDVIWLRTPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGGT...TCTGAGCCAGATGACATCCCCATCCATCCACTCCACCACGCCGCTGTCTTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CAA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGAGGAGCACAGGGCTTaGGGGAGGTTCCAGGATGTT +
Preference number: 5 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLEEHRA*GRFQDV
Trigger: AACATCCTGGAACCTCCCCAAAGCCCTGTGCTCCTC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS CCA 90 bp GTAGTTCTCATCATTCCCGGCCATGACGGTAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTACAACGCTCCTCGATTGGCACCTCAT +
Preference number: 5 (lower is better)
Translates to: VVLIIPGHDGNHSPI*YLSEGYNAPRLAPH
Trigger: ATGAGGTGCCAATCGAGGAGCGTTGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTTACCGTCATGGCCGGGAATGATGAGAACTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160199.2
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGCCAGATGGCCATTCATaGTCCGTAGCTCCACCAGGA +
Preference number: 5 (lower is better)
Translates to: KTGSEESARMCGTLSIPLPDGHS*SVAPPG
Trigger: TCCTGGTGGAGCTACGGACAATGAATGGCCATCTGG...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp TTGAAAGAAACAAAGGAGAGTGGACTAATGGAAGCCTGCTGGTGGAGCTTCAGCTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: LKETKESGLMEACWWSFSSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...GCTGAAGCTCCACCAGCAGGCTTCCATTAGTCCACTCTCCTTTGTTTCTTTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CAA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGACCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GTAAACAATATGAAACCCAGTTATGACTGCCCCCACCCTCTTAGGGTTGCAAGAGGGTCCACTCTGGCTTaGGGAAGAGCCGGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: VNNMKPSYDCPHPLRVARGSTLA*GRAGVG
Trigger: CCCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCC...TCTTGCAACCCTAAGAGGGTGGGGGCAGTCATAACTGGGTTTCATATTGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GAGGTGGCAGTGTCATCATCTGAAATACGCCTGGGCACGTCAGTGATGGCAGGTAACGCCAGAGCCTTCTaGCAGTCTTCCTGGAGAAAG +
Preference number: 5 (lower is better)
Translates to: EVAVSSSEIRLGTSVMAGNARAF*QSSWRK
Trigger: CTTTCTCCAGGAAGACTGCAAGAAGGCTCTGGCGTT...ACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGATGATGACACTGCCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CAA 90 bp TGGTTCCCGGGGACCGTCCACTGTCACTTTAATAGCTCTGTGGTAAGTGGCCACACCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: WFPGTVHCHFNSSVVSGHTPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGGT...GTGGCCACTTACCACAGAGCTATTAAAGTGACAGTGGACGGTCCCCGGGAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS-3UTR CAA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGATCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: KTGSEESARMCGTLSIPLIPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGAT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGATCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQIPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGAT...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGCCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGGGTCCACTCTGGCTTaGGGAAGAGCCGGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGGSTLA*GRAGVG
Trigger: CCCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCC...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GCGTGGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: AWEQVTYENRPDNTFDGLLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...CAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCCACGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AGTTCTGAAGCACCTGCCTGGCTCTTCTTACTGAGAGAGGAAGGCCAGAGGCAGAAGTTTGCACCGCACTaGTGGTTCTGTGGTTGTTTG +
Preference number: 5 (lower is better)
Translates to: SSEAPAWLFLLREEGQRQKFAPH*WFCGCL
Trigger: CAAACAACCACAGAACCACAAGTGCGGTGCAAACTT...CTGCCTCTGGCCTTCCTCTCTCAGTAAGAAGAGCCAGGCAGGTGCTTCAGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CAA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGSTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AGAGTTTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: RVLLNSETTEHFSAVQPISTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...GATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAAACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp CAAAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: QRRDQRSQRGCVVPSASLVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...AAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp CAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTTCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: QVTYENRPDNTFDGLFLGSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...ACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGTCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS-3UTR CAA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCGGGTCCACTCTGGCTTaGGGAAGAGCCGGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: IASVTISILRKHKGGLTIGSTLA*GRAGVG
Trigger: CCCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCC...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp GGGAACAGGTCACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: GNRSLMKTDQTTPLTVCSLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...GGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGTGACCTGTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AGTGGATGGATGGGGATGTCATCTGGCTCAGATAGGAGGGGTAAGACTGGTCATCTTCCTGGAGAAAGTTaGCACCGCACTTGTGGTTCT +
Preference number: 5 (lower is better)
Translates to: SGWMGMSSGSDRRGKTGHLPGES*HRTCGS
Trigger: AGAACCACAAGTGCGGTGCAAACTTTCTCCAGGAAG...ATGACCAGTCTTACCCCTCCTATCTGAGCCAGATGACATCCCCATCCATCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113568.8
CDS-3UTR CAA 90 bp ATAGCATCAGTTACAATTTCCATCTTAAGGAAACACAAAGGTGGGCTGACCATCTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: IASVTISILRKHKGGLTISTMVR*SCGGLN
Trigger: ATTGAGGCCGCCGCACGACAACCGCACCATGGTGGA...GATGGTCAGCCCACCTTTGTGTTTCCTTAAGATGGAAATTGTAACTGATGCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp AGCAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: SRGCGFKAQRGSVSPSSQVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...CTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp CAGAGGCTGTGGTTTCAAAGCACAGAGAGGAAGTGTCTCTCCTTCCTCCCAGACGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: QRLWFQSTERKCLSFLPDVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...GTCTGGGAGGAAGGAGAGACACTTCCTCTCTGTGCTTTGAAACCACAGCCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AAGACGGGATCAGAGGAGTCAGCGAGGATGTGTGGTACCCTCAGCATCCCTTTGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: KTGSEESARMCGTLSIPLTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CAAAGGGATGCTGAGGGTACCACACATCCTCGCTGACTCCTCTGATCCCGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162816.8
ENSMUST00000238400.2
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp ATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGCCATGGTTGACGAATACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: ILTHAGCGPHATGPWLTNTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...ATTCGTCAACCATGGCCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGCTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AAGCACACTTTTAGAGACCGAAGTCAACATATCATTACACTAAGAAATGTTCCACCGAGGGCTACAACCTaGAAGGCCACGGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: KHTFRDRSQHIITLRNVPPRATT*KATGRV
Trigger: GACCCTGCCCGTGGCCTTCAAGGTTGTAGCCCTCGG...TGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTCTCTAAAAGTGTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp ATATGTGAAGTCCACTGGAGTCCACTGGAGGTGGACACACCATCAGCATCTCAAGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: ICEVHWSPLEVDTPSASQVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...TTGAGATGCTGATGGTGTGTCCACCTCCAGTGGACTCCAGTGGACTTCACATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS-3UTR CAA 90 bp AAGCACACTTTTAGAGACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAGGGTCCACTCTGGCTTaGGGAAGAGCCGGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: KHTFRDRSQHIITLRNVPGSTLA*GRAGVG
Trigger: CCCTACCCCGGCTCTTCCCAAAGCCAGAGTGGACCC...TGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTCTCTAAAAGTGTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGATCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGIPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGAT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
ENSMUST00000162629.8
CDS-3UTR CAA 90 bp ACATTATGCCTGAAGGAATTGAGATTGCTTAGCAATATTTCCGATATGGCTCTATCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: TLCLKELRLLSNISDMALSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...TAGAGCCATATCGGAAATATTGCTAAGCAATCTCAATTCCTTCAGGCATAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGATCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGC +
Preference number: 5 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLIPKEA*LTRCHC
Trigger: GCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGAT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113571.10
CDS-3UTR CAA 90 bp GTCCCTTTGAAGTTCAGAGTAAACTCATCCACGATCATGACCTGTGGCACAAAGGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: VPLKFRVNSSTIMTCGTKVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...CTTTGTGCCACAGGTCATGATCGTGGATGAGTTTACTCTGAACTTCAAAGGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCATCTGTCTGTGCCTTCTaGGTTCCCGGGGACCGTCCA +
Preference number: 5 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSSVCAF*VPGDRP
Trigger: TGGACGGTCCCCGGGAACCAAGAAGGCACAGACAGA...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp AATAAGGGAGGACAGAGGGAAACAACCTGTTTTCAAAACTGCTTCTGGGTTGCTGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: NKGGQRETTCFQNCFWVAVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...AGCAACCCAGAAGCAGTTTTGAAAACAGGTTGTTTCCCTCTGTCCTCCCTTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGGTTGAACCTGGCTACTaGGTTTTTCATAACAGCGGA +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGVEPGY*VFHNSG
Trigger: TCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAAC...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GACCGAAGTCAACATATCATTACACTAAGAAATGTTCCAAATGTCCAAATGTCACTCCCCCGGGTACCATaGGGAACTGATAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: DRSQHIITLRNVPNVQMSLPRVP*GTDRML
Trigger: CAGCATCCTATCAGTTCCCAATGGTACCCGGGGGAG...TGACATTTGGACATTTGGAACATTTCTTAGTGTAATGATATGTTGACTTCGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp TCTTTATATATGTATATATTAACACATGCGGGATGTGGCCCCCATGCCACTGGGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: SLYMYILTHAGCGPHATGTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CCCAGTGGCATGGGGGCCACATCCCGCATGTGTTAATATATACATATATAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp TTTGCTCAACTCAGAGACCACAGAACACTTTTCTGCAGTTCAACCAATCACTTGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: FAQLRDHRTLFCSSTNHLTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CAAGTGATTGGTTGAACTGCAGAAAAGTGTTCTGTGGTCTCTGAGTTGAGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp GGGTTGGTTAGTACACATAAACGGCTCCAGAAGAGTAATAAGACATTGCTTTGGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: GLVSTHKRLQKSNKTLLWTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CCAAAGCAATGTCTTATTACTCTTCTGGAGCCGTTTATGTGTACTAACCAACCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
CDS-3UTR CAA 90 bp ACTTATGAAAACAGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: TYENRPDNTFDGLFLGKGTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...CCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCTGTTTTCATAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS-3UTR CAA 90 bp AGACCAGACAACACCTTTGACGGTTTGTTCCTTGGTAAAGGGGACATCTTAAATACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: RPDNTFDGLFLGKGDILNTNLRS*NLATWF
Trigger: AAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGT...ATTTAAGATGTCCCCTTTACCAAGGAACAAACCGTCAAAGGTGTTGTCTGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000162878.8
CDS CAA 90 bp ACCAGTTCGGCCGGGTGGTCCGCGATGATCTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAATCGGGGCACTGCGGCCGCCGCCGCT +
Preference number: 6 (lower is better)
Translates to: TSSAGWSAMISTMVR*SCGGLNRGTAAAAA
Trigger: AGCGGCGGCGGCCGCAGTGCCCCGATTGAGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCGGACCACCCGGCCGAACTGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGGTCCGCGATGATCTCCACCATGGTGCGGTTGTCGTaGGGCGGCCTCAATCGGGGCACTGCGGCCGCCGCC +
Preference number: 6 (lower is better)
Translates to: WSAMISTMVRLS*GGLNRGTAAAA
Trigger: GGCGGCGGCCGCAGTGCCCCGATTGAGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCGGACCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS CAA 72 bp GCCGGGTGGTCCGCGATGATCTCCACCATGGTGCGGTaGTCGTGCGGCGGCCTCAATCGGGGCACTGCGGCC +
Preference number: 6 (lower is better)
Translates to: AGWSAMISTMVR*SCGGLNRGTAA
Trigger: GGCCGCAGTGCCCCGATTGAGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCGGACCACCCGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS TCA 72 bp TGTCGGTGCGGACCAGTTCGGCCGGGTGGTCCGCGATaGTCTCCACCATGGTGCGGTTGTCGTGCGGCGGCC +
Preference number: 6 (lower is better)
Translates to: CRCGPVRPGGPR*SPPWCGCRAAA
Trigger: GGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCGGACCACCCGGCCGAACTGGTCCGCACCGACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTaGTGCTGCGCAGCCACCACCGGGCTCACGTCGCTC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCAATTGLTSL
Trigger: GAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTaGTGCGCAGCCACCACCGGGCTCACGTCGCTCATC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CAATTGLTSLI
Trigger: GATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTaGTGCTGCTGCGCAGCCACCACCGGGCTCACGTCG +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCCAATTGLTS
Trigger: CGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTaGGCAGCCACCACCGGGCTCACGTCGCTCATCTTG +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*AATTGLTSLIL
Trigger: CAAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS GCA 72 bp TGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTaGTGTTGCTGCTGCTGCGCAGCCACCACCGGGCTC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCCCCAATTGL
Trigger: GAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS CAA 72 bp TTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTaGCTGCTGCTGCGCAGCCACCACCGGGCTCACGTC +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLL*LLLRSHHRAHV
Trigger: GACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS TCA 72 bp AACGGCTCCGAGCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACA +
Preference number: 6 (lower is better)
Translates to: NGSELKYAWARQ*WQVARCPVWKT
Trigger: TGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGCTCGGAGCCGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162816.8
CDS CAA 90 bp CTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTaGCTGCTGCTGCGCAGCCACCACCGGGCTCACGTCGCTCATCTT +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLLLLL*LLLRSHHRAHVAHL
Trigger: AAGATGAGCGACGTGAGCCCGGTGGTGGCTGCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS CAA 72 bp TGCGGCCGCCTCCTGCTGCTGCTGCTGCTGCTGCTGTaGTTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: CGRLLLLLLLLL*LLLLLLLLLLL
Trigger: CAGCAACAGCAGCAGCAACAACAGCAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGGAGGCGGCCGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS TCA 72 bp GTTCTGAAGCACCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACA +
Preference number: 6 (lower is better)
Translates to: VLKHLKYAWARQ*WQVARCPVWKT
Trigger: TGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGGTGCTTCAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162373.8
ENSMUST00000162629.8
CDS TCA 72 bp CGCCGGCTGGTGCTCGGATCCCAAAAGAAGCTTTGCTaGCACGGTGTCACTGCGCTGAAGAGGCTGTTTGAC +
Preference number: 6 (lower is better)
Translates to: RRLVLGSQKKLC*HGVTALKRLFD
Trigger: GTCAAACAGCCTCTTCAGCGCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGATCCGAGCACCAGCCGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162629.8
ENSMUST00000238400.2
CDS TCA 72 bp TGGGTTCTGAATCTGAAATACGCCTGGGCACGTCAGTaGTGGCAGGTAGCCCGGTGCCCCGTGTGGAAGACA +
Preference number: 6 (lower is better)
Translates to: WVLNLKYAWARQ*WQVARCPVWKT
Trigger: TGTCTTCCACACGGGGCACCGGGCTACCTGCCATCACTGACGTGCCCAGGCGTATTTCAGATTCAGAACCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS CAA 72 bp GAAGCGCCGGCTGGTGCTCGGATCCCAAAAGAAGCTTaGCTGACACGGTGTCACTGCGCTGAAGAGGCTGTT +
Preference number: 6 (lower is better)
Translates to: EAPAGARIPKEA*LTRCHCAEEAV
Trigger: AACAGCCTCTTCAGCGCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGATCCGAGCACCAGCCGGCGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000113571.10
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162629.8
ENSMUST00000238400.2
CDS CCA 72 bp ATCATTCCCGGCCATGACGGTAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTACAACCTTGAAGGCCAC +
Preference number: 6 (lower is better)
Translates to: IIPGHDGNHSPI*YLSEGYNLEGH
Trigger: GTGGCCTTCAAGGTTGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTTACCGTCATGGCCGGGAATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000113571.10
ENSMUST00000113572.9
ENSMUST00000159943.8
ENSMUST00000160673.8
ENSMUST00000162130.8
ENSMUST00000162373.8
ENSMUST00000162629.8
ENSMUST00000162816.8
ENSMUST00000162878.8
ENSMUST00000238400.2
CDS CCA 72 bp ATCATTCCCGGCCATGACGGTAACCACAGTCCCATCTaGTACCTCTCCGAGGGCTACAACGCTCCTCGATTG +
Preference number: 6 (lower is better)
Translates to: IIPGHDGNHSPI*YLSEGYNAPRL
Trigger: CAATCGAGGAGCGTTGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTTACCGTCATGGCCGGGAATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160199.2
CDS CAA 90 bp GCCTGCCTGGGATCTCGTCCGCTCCGGCCCACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTTTTCATAACAGCGGAGGCATTTCGG +
Preference number: 6 (lower is better)
Translates to: ACLGSRPLRPTNLRS*NLATWFFITAEAFR
Trigger: CCGAAATGCCTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGTGGGCCGGAGCGGACGAGATCCCAGGCAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162878.8
CDS TCA 72 bp CCTCTCCGAGGGCTACAACCCCAAAAGAAGCTTTGCTaGCACGGTGTCACTGCGCTGAAGAGGCTGTTTGAC +
Preference number: 6 (lower is better)
Translates to: PLRGLQPQKKLC*HGVTALKRLFD
Trigger: GTCAAACAGCCTCTTCAGCGCAGTGACACCGTGTCAGCAAAGCTTCTTTTGGGGTTGTAGCCCTCGGAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113568.8
ENSMUST00000160672.2
CDS CCA 72 bp GGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTGCTaGGTTCTGAATCTGAAATACGCCTGGGCACGTCAG +
Preference number: 6 (lower is better)
Translates to: GTGWWKTVSPRC*VLNLKYAWARQ
Trigger: CTGACGTGCCCAGGCGTATTTCAGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS GCA 72 bp ACAGGAACAGGGTGGTGGAAGACTGTGAGTCCAAGGTaGTGGGTTCTGAATCTGAAATACGCCTGGGCACGT +
Preference number: 6 (lower is better)
Translates to: TGTGWWKTVSPR*WVLNLKYAWAR
Trigger: ACGTGCCCAGGCGTATTTCAGATTCAGAACCCAGCACCTTGGACTCACAGTCTTCCACCACCCTGTTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238400.2
CDS CAA 72 bp GGATCTCGTCCGCTCCGGCCCACAAATCTCAGATCGTaGAACCTGGCTACTTGGTTTTTCATAACAGCGGAG +
Preference number: 6 (lower is better)
Translates to: GSRPLRPTNLRS*NLATWFFITAE
Trigger: CTCCGCTGTTATGAAAAACCAAGTAGCCAGGTTCAACGATCTGAGATTTGTGGGCCGGAGCGGACGAGATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162878.8