Pregenerated sensors for RUNDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035007Ensembl transcript IDs: ENSMUST00000040561.6
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGTaGCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTC | + |
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Preference number: 1 (lower is better) Translates to: TGGSWFSILSEPWSK*PLRAFSHAALHAPV Trigger: GACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 90 bp | GCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGTGCCCACTaGGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTCTCCAACA | + |
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Preference number: 1 (lower is better) Translates to: AVGSPSSVSPGASAH*EPSVMPLCTLLSPT Trigger: TGTTGGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR TCA 90 bp | TTTCAGGGAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTaGGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGC | + |
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Preference number: 1 (lower is better) Translates to: FQGTKHRRQLVLHPQ*ALEQVPTASLQSCR Trigger: GCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTCCCTGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 90 bp | GGGGTTGGTGCTAAGGATTCCCAGGCAAGCACTCTATCACGGAGCTaGACGCCAAGCCCAAACACTGCCGTGTTCTTGAACAGGAAGTCA | + |
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Preference number: 1 (lower is better) Translates to: GVGAKDSQASTLSRS*TPSPNTAVFLNRKS Trigger: TGACTTCCTGTTCAAGAACACGGCAGTGTTTGGGCTTGGCGTGCAGCTCCGTGATAGAGTGCTTGCCTGGGAATCCTTAGCACCAACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CCA 90 bp | GTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGGTaGGCACAACCCACATTTTCTAAAATTCAGACATGGCACGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: VSQCLPELPHTAREG*AQPTFSKIQTWHGE Trigger: CTCACCGTGCCATGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 90 bp | GCCGTGTTCTTGAACAGGAAGTCAATGATGCATCAAAGTGCACACTaGAGACACAAGGTAAAGTGCATTTCAGGGAACAAAGCACAGGCG | + |
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Preference number: 1 (lower is better) Translates to: AVFLNRKSMMHQSAH*RHKVKCISGNKAQA Trigger: CGCCTGTGCTTTGTTCCCTGAAATGCACTTTACCTTGTGTCTGCAGTGTGCACTTTGATGCATCATTGACTTCCTGTTCAAGAACACGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 90 bp | AAACACTGCCGTGTTCTTGAACAGGAAGTCAATGATGCATCAAAGTaGACACTGCAGACACAAGGTAAAGTGCATTTCAGGGAACAAAGC | + |
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Preference number: 1 (lower is better) Translates to: KHCRVLEQEVNDASK*TLQTQGKVHFREQS Trigger: GCTTTGTTCCCTGAAATGCACTTTACCTTGTGTCTGCAGTGTGCACTTTGATGCATCATTGACTTCCTGTTCAAGAACACGGCAGTGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CCA 90 bp | GATACTGTTTCTGTTTTAGATTTTACTATTACATTGATTTGTGTTTaGGCAGGGATTCCCATGTGCCATAGTTCATGTGTGGAGGTAAGA | + |
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Preference number: 1 (lower is better) Translates to: DTVSVLDFTITLICV*AGIPMCHSSCVEVR Trigger: TCTTACCTCCACACATGAACTATGGCACATGGGAATCCCTGCCCAAACACAAATCAATGTAATAGTAAAATCTAAAACAGAAACAGTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTCTCCCACCCCAGGGGGCTGTaGCACCCATCACCACCAGTG | + |
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Preference number: 2 (lower is better) Translates to: SKCPLRAFSHAALHAPVSHPRGL*HPSPPV Trigger: CACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTG...GGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR TCA 90 bp | GAGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTAGACTGGGTCAGTCCTaGGAGGCCCACGGAAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: EPWSKCPLRAFSHAALHARLGQS*EAHGRK Trigger: CTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCT...AGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR GCA 90 bp | AGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTCTCCGAGAGCTCTGTTCTCTaGTTGTACCCCTCAGACTGC | + |
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Preference number: 2 (lower is better) Translates to: SKCPLRAFSHAALHAPVSESSVL*LYPSDC Trigger: GCAGTCTGAGGGGTACAAGCAGAGAACAGAGCTCTC...GGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTCTCCTTCACTTCTGAAGACTaGGTCAGTCCTGAGAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: SKCPLRAFSHAALHAPVSFTSED*VSPERP Trigger: GGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGAA...GGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCTTAGAGCAAGGTGTGTaGGGGCTAAGGTTAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: VVPMSHTPGGCGTHHHQCLEQGV*GLRLGI Trigger: AATGCCTAACCTTAGCCCCCACACACCTTGCTCTAA...GCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CCA 90 bp | AGTGCTTTCACTTCTGAAGACTGGGTCAGTCCTGAGAGGCCCACGGAAGAAAGTACAGCAAGAGAAGGGTaGGCACAACCCACATTTTCT | + |
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Preference number: 2 (lower is better) Translates to: SAFTSEDWVSPERPTEESTAREG*AQPTFS Trigger: AGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGT...ACTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGAAAGCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CCA 90 bp | CTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACATTTTGATGAGAGGCTCTaGCACGTCTTTCTAAAACGC | + |
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Preference number: 2 (lower is better) Translates to: LIQQEKGGHNPHFLKFRHFDERL*HVFLKR Trigger: GCGTTTTAGAAAGACGTGCCAGAGCCTCTCATCAAA...ATGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CAA 90 bp | ACCTCTGGTCCTGATACTGTTTCTGTTTTAGATTTTACTATTACATaGATTTGTGTTTGGGCAGGGATTCCCATGTGCCATAGTTCATGT | + |
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Preference number: 2 (lower is better) Translates to: TSGPDTVSVLDFTIT*ICVWAGIPMCHSSC Trigger: ACATGAACTATGGCACATGGGAATCCCTGCCCAAACACAAATCAATGTAATAGTAAAATCTAAAACAGAAACAGTATCAGGACCAGAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR TCA 72 bp | GCTCTGCACGCTCCTGTCTCCAACAAGTGGTGCCAATaGGTCACACCCCAGGGGGCTGTGGCACCCATCACC | + |
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Preference number: 3 (lower is better) Translates to: ALHAPVSNKWCQ*VTPQGAVAPIT Trigger: GGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACCACTTGTTGGAGACAGGAGCGTGCAGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 72 bp | GCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATaGCGCTCTGCACGCTCCTGTCTCCAACAAGTGGTG | + |
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Preference number: 3 (lower is better) Translates to: ALEQVPTASLQS*RSARSCLQQVV Trigger: CACCACTTGTTGGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 72 bp | TCTCCATCCTCAGTGAGCCCTGGAGCAAGTGCCCACTaGGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: SPSSVSPGASAH*EPSVMPLCTLL Trigger: CAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CCA 72 bp | ACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTaGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCC | + |
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Preference number: 3 (lower is better) Translates to: TGGSWFSILSEP*SKCPLRAFSHA Trigger: GGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR TCA 72 bp | ACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTaGGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: TKHRRQLVLHPQ*ALEQVPTASLQ Trigger: CTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 72 bp | AGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGTaGCCACTGCGAGCCTTCAGTCATGCCGCTCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: SWFSILSEPWSK*PLRAFSHAALH Trigger: GTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 72 bp | GCTAAGGATTCCCAGGCAAGCACTCTATCACGGAGCTaGACGCCAAGCCCAAACACTGCCGTGTTCTTGAAC | + |
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Preference number: 3 (lower is better) Translates to: AKDSQASTLSRS*TPSPNTAVFLN Trigger: GTTCAAGAACACGGCAGTGTTTGGGCTTGGCGTGCAGCTCCGTGATAGAGTGCTTGCCTGGGAATCCTTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CAA 90 bp | GAGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTTACTATTACATTGATTaGTGTTTGGGCAGGGATTCC | + |
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Preference number: 3 (lower is better) Translates to: EPWSKCPLRAFSHAALHAYYYID*CLGRDS Trigger: GGAATCCCTGCCCAAACACAAATCAATGTAATAGTA...AGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CAA 90 bp | GGAGACTCAAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGCCCCAACACTATTTTaGATGAGAGGCTCTGGCACG | + |
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Preference number: 3 (lower is better) Translates to: GDSRSVSVFQNSLIQQEKAPTLF*MRGSGT Trigger: CGTGCCAGAGCCTCTCATCAAAAATAGTGTTGGGGC...CTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTTGAGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR TCA 72 bp | TCACCACCAGTGCAGTATGCTCCTGACGGATTCTTCTaGGTGCTTTCACTTCTGAAGACTGGGTCAGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: SPPVQYAPDGFF*VLSLLKTGSVL Trigger: CAGGACTGACCCAGTCTTCAGAAGTGAAAGCACTCAGAAGAATCCGTCAGGAGCATACTGCACTGGTGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CAA 90 bp | AGTGCTTTCACTTCTGAAGACTGGGTCAGTCCTGAGAGGCCCACGGAAGAAAGTTACATTGATTTGTGTTaGGGCAGGGATTCCCATGTG | + |
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Preference number: 3 (lower is better) Translates to: SAFTSEDWVSPERPTEESYIDLC*GRDSHV Trigger: CACATGGGAATCCCTGCCCAAACACAAATCAATGTA...ACTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGAAAGCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CCA 72 bp | TGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGGTaGGCACAACCCACATTTTCTAAAATTCAGACATGG | + |
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Preference number: 3 (lower is better) Translates to: CLPELPHTAREG*AQPTFSKIQTW Trigger: CCATGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR GCA 72 bp | TTGAACAGGAAGTCAATGATGCATCAAAGTGCACACTaGAGACACAAGGTAAAGTGCATTTCAGGGAACAAA | + |
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Preference number: 3 (lower is better) Translates to: LNRKSMMHQSAH*RHKVKCISGNK Trigger: TTTGTTCCCTGAAATGCACTTTACCTTGTGTCTGCAGTGTGCACTTTGATGCATCATTGACTTCCTGTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR-3UTR CAA 90 bp | CCTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACAGATTTTACTATTACATaGATTTGTGTTTGGGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: PHTAREGWAQPTFSKIQTDFTIT*ICVWAG Trigger: CCCTGCCCAAACACAAATCAATGTAATAGTAAAATC...TGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | GGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCAGACCGCCACAAGGGTCTaGCAGCCCCTCGTAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: GANESHPRGLWHPSPPVQTATRV*QPLVTQ Trigger: CTGGGTTACGAGGGGCTGGCAGACCCTTGTGGCGGT...CTGCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR CCA 90 bp | GTGGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCGCTCCCATGGGTGCATaGTCTCGGGGGCTGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VVPMSHTPGGCGTHHHQCAPMGA*SRGLRR Trigger: TCTCCTCAGCCCCCGAGACCATGCACCCATGGGAGC...GCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | AGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCCTGTCTCCCAGAGCAAAGGACTGTaGGAGCTTCCGGGCCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SKCPLRAFSHAALHAPVSQSKGL*ELPGRG Trigger: TCCCCGGCCCGGAAGCTCTCACAGTCCTTTGCTCTG...GGAGACAGGAGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | GAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGGCTCGCCGCATCAGGTaGAGCCCCGTCTCCCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EQSTGGSWFSILSEPWSKARRIR*SPVSRA Trigger: AGCCCGGGAGACGGGGCTGCACCTGATGCGGCGAGC...CTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGGCCCCGCGCACTACCTaGCGCAGACGGAACTGCACC | + |
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Preference number: 4 (lower is better) Translates to: EQSTGGSWFSILSEPWSKAPRTT*RRRNCT Trigger: GGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGC...CTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | GTGGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCACTGGGTTGACAATCTaGGCCACTGCTGCGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: VVPMSHTPGGCGTHHHQCTGLTI*ATAAST Trigger: TGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGT...GCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | GTGGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCAATCTGAGCCACTGCTaGGTCCACACGTTGACGAAG | + |
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Preference number: 4 (lower is better) Translates to: VVPMSHTPGGCGTHHHQCNLSHC*VHTLTK Trigger: CTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATT...GCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | GAGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCGGGGATTCCACATATaGACGGCCATTCTTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: EPWSKCPLRAFSHAALHARGFHI*TAILGM Trigger: CATGCCAAGAATGGCCGTGCATATGTGGAATCCCCG...AGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR CCA 90 bp | GAGCCCTGGAGCAAGTGCCCACTGCGAGCCTTCAGTCATGCCGCTCTGCACGCTCTCTTTCACCCGCACTaGGTTGACAATCTGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: EPWSKCPLRAFSHAALHALFHPH*VDNLSH Trigger: GTGGCTCAGATTGTCAACCCAGTGCGGGTGAAAGAG...AGCGTGCAGAGCGGCATGACTGAAGGCTCGCAGTGGGCACTTGCTCCAGGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | GAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGAGACGGAACTGCACCTaGGCGAAGTGCGAGGACAGC | + |
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Preference number: 4 (lower is better) Translates to: EQSTGGSWFSILSEPWSKRRNCT*AKCEDS Trigger: GCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCT...CTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | GAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGCATGGTCTCGGGGGCTaGGGAGAAAACTGGCAACAA | + |
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Preference number: 4 (lower is better) Translates to: EQSTGGSWFSILSEPWSKHGLGG*GENWQQ Trigger: TTGTTGCCAGTTTTCTCCTCAGCCCCCGAGACCATG...CTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR CCA 90 bp | GGTAAAGTGCATTTCAGGGAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCTGCTTTGCCGGGTCCTaGGGGCAGTGTACTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: GKVHFREQSTGGSWFSILCFAGS*GQCTAT Trigger: GGTGGCAGTACACTGCCCCCAGGACCCGGCAAAGCA...GAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTCCCTGAAATGCACTTTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTGAGCCCTGGAGCAAGCTAACAGTGAAGATCTaGAGCACAGCCAGCGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: EQSTGGSWFSILSEPWSKLTVKI*STASAR Trigger: GCGAGCGCTGGCTGTGCTCCAGATCTTCACTGTTAG...CTTGCTCCAGGGCTCACTGAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | AAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGGTGGGCACTCTGCCACAAGGTTTaGGGGATCTGGCCCGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: KVSQCLPELPHTAREGWALCHKV*GIWPVA Trigger: TGCCACGGGCCAGATCCCTCAAACCTTGTGGCAGAG...TGCCCACCCTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR GCA 90 bp | CACGGTGAGTTGGGCATTAGCTGTGTGGTAATTGATTTTGTTACCACAGGCTCCTGGCGCAGACGGAACTaGACCTGCGCGAAGTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: HGELGISCVVIDFVTTGSWRRRN*TCAKCE Trigger: CTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCA...GGAGCCTGTGGTAACAAAATCAATTACCACACAGCTAATGCCCAACTCACCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| 3UTR CAA 72 bp | GTACCCCTCAGACTGCCAGGTATAATGGCAAGCATCTaGACCTGGCGAGCTGTCTCTCAGCCCCAACACTAT | + |
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Preference number: 4 (lower is better) Translates to: VPLRLPGIMASI*TWRAVSQPQHY Trigger: ATAGTGTTGGGGCTGAGAGACAGCTCGCCAGGTCAAGATGCTTGCCATTATACCTGGCAGTCTGAGGGGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | GGAGACTCAAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGTCACCCGCACTGGGTTaGCAATCTGAGCCACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GDSRSVSVFQNSLIQQEKSPALG*QSEPLL Trigger: CAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGA...CTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTTGAGTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS-3UTR TCA 90 bp | GGTAAAGTGCATTTCAGGGAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGTCAGCGCTGCGCTTaGAAGGGTCATGCTCTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GKVHFREQSTGGSWFSILSQRCA*KGHALS Trigger: TGACAGAGCATGACCCTTTCAAGCGCAGCGCTGACT...GAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTCCCTGAAATGCACTTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | AGTGCTTTCACTTCTGAAGACTGGGTCAGTCCTGAGAGGCCCACGGAAGAAAGTGACAATCTGAGCCACTaGTGCGTCCACACGTTGACG | + |
|
Preference number: 4 (lower is better) Translates to: SAFTSEDWVSPERPTEESDNLSH*CVHTLT Trigger: CGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTC...ACTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGAAAGCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | AGTGCTTTCACTTCTGAAGACTGGGTCAGTCCTGAGAGGCCCACGGAAGAAAGTGGAGTAGTCTCTGTCTaGCTGGCTCCTCTGCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: SAFTSEDWVSPERPTEESGVVSV*LAPLPQ Trigger: TTGTGGCAGAGGAGCCAGGCAGACAGAGACTACTCC...ACTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGAAAGCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | GGAGACTCAAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGTTCTGCTTCTCCCTCTaGGTTTCCAGGCGCTCCCGT | + |
|
Preference number: 4 (lower is better) Translates to: GDSRSVSVFQNSLIQQEKFCFSL*VSRRSR Trigger: ACGGGAGCGCCTGGAAACCCAGAGGGAGAAGCAGAA...CTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTTGAGTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| 3UTR CAA 72 bp | CGGAGCTGCACGCCAAGCCCAAACACTGCCGTGTTCTaGAACAGGAAGTCAATGATGCATCAAAGTGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: RSCTPSPNTAVF*NRKSMMHQSAH Trigger: GTGTGCACTTTGATGCATCATTGACTTCCTGTTCAAGAACACGGCAGTGTTTGGGCTTGGCGTGCAGCTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | TGCCATAGTTCATGTGTGGAGGTAAGAGGACAGGTAGTGAGAGCTCTGTTCTCTTTTTCCTGTTCGCTCTaGTCCTCACCCCGCACCCGT | + |
|
Preference number: 4 (lower is better) Translates to: CHSSCVEVRGQVVRALFSFSCSL*SSPRTR Trigger: ACGGGTGCGGGGTGAGGACCAGAGCGAACAGGAAAA...AGAGAACAGAGCTCTCACTACCTGTCCTCTTACCTCCACACATGAACTATGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | GGAGACTCAAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGTCTCTTGGCATCTTCTaGCTTTGCTTTGCCGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GDSRSVSVFQNSLIQQEKSLGIF*LCFAGS Trigger: GGACCCGGCAAAGCAAAGGCAGAAGATGCCAAGAGA...CTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTTGAGTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | GGTAAAGTGCATTTCAGGGAACAAAGCACAGGCGGCAGTTGGTTCTCCATCCTCAGCTGGGTCTTCAGCTaGAGAATCAGTTCTTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GKVHFREQSTGGSWFSILSWVFS*RISSFC Trigger: GCAGAAAGAACTGATTCTGCAGCTGAAGACCCAGCT...GAGGATGGAGAACCAACTGCCGCCTGTGCTTTGTTCCCTGAAATGCACTTTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | CACGGTGAGTTGGGCATTAGCTGTGTGGTAATTGATTTTGTTACCACAGGCTCCTCTCCCGGGCTCTCTTaGCATCTTCTGCCTTTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: HGELGISCVVIDFVTTGSSPGLS*HLLPLL Trigger: AAGCAAAGGCAGAAGATGCCAAGAGAGCCCGGGAGA...GGAGCCTGTGGTAACAAAATCAATTACCACACAGCTAATGCCCAACTCACCGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | AAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGGTGGGCAAGAATCAGTTCTTTCTaGTTCTCCCTCTGGGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KVSQCLPELPHTAREGWARISSF*FSLWVS Trigger: GGAAACCCAGAGGGAGAAGCAGAAAGAACTGATTCT...TGCCCACCCTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | CCTCCGACTCCCTGGCTTTTAATCTACAATTCTAGGACATCTACGTCTTTAGAGTCAAGGTCCCGGATCTaGGTTTTCAGCTGCTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: PPTPWLLIYNSRTSTSLESRSRI*VFSCST Trigger: GGTGGAGCAGCTGAAAACCCAGATCCGGGACCTTGA...CTCTAAAGACGTAGATGTCCTAGAATTGTAGATTAAAAGCCAGGGAGTCGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | GGAGGTAAGAGGACAGGTAGTGAGAGCTCTGTTCTCTGCTTGTACCCCTCAGACCTTCCCACTTCATCTTaGATGAAGCTGATGAACATC | + |
|
Preference number: 4 (lower is better) Translates to: GGKRTGSESSVLCLYPSDLPTSS*MKLMNI Trigger: GATGTTCATCAGCTTCATCCAAGATGAAGTGGGAAG...GTCTGAGGGGTACAAGCAGAGAACAGAGCTCTCACTACCTGTCCTCTTACCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | CCTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACATCAGAAGGCTCTGTTTaGGGGTCACAGCAGTGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: PHTAREGWAQPTFSKIQTSEGSV*GSQQCH Trigger: GTGACACTGCTGTGACCCCCAAACAGAGCCTTCTGA...TGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CCA 90 bp | CCTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACATCAGCACCAGGTGGATaGCTGTCAGAAGGCTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: PHTAREGWAQPTFSKIQTSAPGG*LSEGSV Trigger: AACAGAGCCTTCTGACAGCCATCCACCTGGTGCTGA...TGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR GCA 90 bp | CCTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACATGTCTCAAGGCTAGCTaGTTTACTCTGTCGACCGAT | + |
|
Preference number: 4 (lower is better) Translates to: PHTAREGWAQPTFSKIQTCLKAS*FTLSTD Trigger: ATCGGTCGACAGAGTAAAGCAGCTAGCCTTGAGACA...TGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| 3UTR CAA 72 bp | CCTGATACTGTTTCTGTTTTAGATTTTACTATTACATaGATTTGTGTTTGGGCAGGGATTCCCATGTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PDTVSVLDFTIT*ICVWAGIPMCH Trigger: ATGGCACATGGGAATCCCTGCCCAAACACAAATCAATGTAATAGTAAAATCTAAAACAGAAACAGTATCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | CGCCGCCTCCGAGAACGTCGCCGCCCCAGGACCGGCCTCGGCCACTaGCCCCACGGGAGCCCAGCGCACAGTCTCGCATGGTGGCAGCGA | + |
|
Preference number: 5 (lower is better) Translates to: RRLRERRRPRTGLGH*PHGSPAHSLAWWQR Trigger: TCGCTGCCACCATGCGAGACTGTGCGCTGGGCTCCCGTGGGGGCAGTGGCCGAGGCCGGTCCTGGGGCGGCGACGTTCTCGGAGGCGGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | ACCTGCGCGAAGTGCGAGGACAGCGCGAGCAGGGCCGAATCCAGCTaGCGCCGCTCGGCTTCCAGCCGCCTCAGCGTGCGGACAGTCGCG | + |
|
Preference number: 5 (lower is better) Translates to: TCAKCEDSASRAESS*RRSASSRLSVRTVA Trigger: CGCGACTGTCCGCACGCTGAGGCGGCTGGAAGCCGAGCGGCGGCAGCTGGATTCGGCCCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | TCCGCCGGCGCCCCGCGCACTACCTGGCGCAGACGGAACTGCACCTaGGCGAAGTGCGAGGACAGCGCGAGCAGGGCCGAATCCAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SAGAPRTTWRRRNCT*AKCEDSASRAESSC Trigger: GCAGCTGGATTCGGCCCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | TGCTGCTCCGCCGGCGCCCCGCGCACTACCTGGCGCAGACGGAACTaGACCTGCGCGAAGTGCGAGGACAGCGCGAGCAGGGCCGAATCC | + |
|
Preference number: 5 (lower is better) Translates to: CCSAGAPRTTWRRRN*TCAKCEDSASRAES Trigger: GGATTCGGCCCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGAGCAGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | CAGCCGCGGAAGGCAAAGTCTTCGAGCTCGCGCAGGAGACGCTGCTaGTCCGCCGGCGCCCCGCGCACTACCTGGCGCAGACGGAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: QPRKAKSSSSRRRRC*SAGAPRTTWRRRNC Trigger: GCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGAGCAGCAGCGTCTCCTGCGCGAGCTCGAAGACTTTGCCTTCCGCGGCTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | GGACAGCCGCGGAAGGCAAAGTCTTCGAGCTCGCGCAGGAGACGCTaGTGCTCCGCCGGCGCCCCGCGCACTACCTGGCGCAGACGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: GQPRKAKSSSSRRRR*CSAGAPRTTWRRRN Trigger: GTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGAGCAGCAGCGTCTCCTGCGCGAGCTCGAAGACTTTGCCTTCCGCGGCTGTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | CCGGTCCCCCGGCAGCACATCGCTTTCGTCACCGCCACAAGGGTCTaGCAGCCCCTCGTAACCCAGGACGTGAGGACAGCCGCGGAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: PVPRQHIAFVTATRV*QPLVTQDVRTAAEG Trigger: GCCTTCCGCGGCTGTCCTCACGTCCTGGGTTACGAGGGGCTGGCAGACCCTTGTGGCGGTGACGAAAGCGATGTGCTGCCGGGGGACCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 90 bp | TTGCTTTGCCGGGTCCTGGGGGCAGTGTACTGCCACCCACCCTGGTaGAGCCGATTCCCACCTTCCCGCTGGCTTGGCACTCACAGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: LLCRVLGAVYCHPPW*SRFPPSRWLGTHSV Trigger: GACACTGTGAGTGCCAAGCCAGCGGGAAGGTGGGAATCGGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCGGCAAAGCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 90 bp | CCTTTGCTTTGCCGGGTCCTGGGGGCAGTGTACTGCCACCCACCCTaGTGGAGCCGATTCCCACCTTCCCGCTGGCTTGGCACTCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: PLLCRVLGAVYCHPP*WSRFPPSRWLGTHS Trigger: ACTGTGAGTGCCAAGCCAGCGGGAAGGTGGGAATCGGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCGGCAAAGCAAAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CAA 90 bp | GGTGCCAATGAGTCACACCCCAGGGGGCTGTGGCACCCATCACCACCAGTGCAGGAGTCAGCGCTGCGCTaGAAAGGGTCATGCTCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GANESHPRGLWHPSPPVQESALR*KGSCSV Trigger: GACAGAGCATGACCCTTTCAAGCGCAGCGCTGACTC...CTGCACTGGTGGTGATGGGTGCCACAGCCCCCTGGGGTGTGACTCATTGGCACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | CTAACAGTGAAGATCTGGAGCACAGCCAGCGCTCGCCGCATCAGGTaGAGCCCCGTCTCCCGGGCTCTCTTGGCATCTTCTGCCTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: LTVKIWSTASARRIR*SPVSRALLASSAFA Trigger: AGCAAAGGCAGAAGATGCCAAGAGAGCCCGGGAGACGGGGCTGCACCTGATGCGGCGAGCGCTGGCTGTGCTCCAGATCTTCACTGTTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS TCA 90 bp | GGGTTTTCAGCTGCTCCACCAGCTGCTCTTTCACCCGCACTGGGTTaGCAATCTGAGCCACTGCTGCGTCCACACGTTGACGAAGCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: GFSAAPPAALSPALG*QSEPLLRPHVDEAP Trigger: AGGAGCTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGAAAGAGCAGCTGGTGGAGCAGCTGAAAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS TCA 90 bp | GGGGGTCACAGCAGTGTCACCCATTATAGGCAGAGCAAAGGACTGTaGGAGCTTCCGGGCCGGGGATTCCACATATGCACGGCCATTCTT | + |
|
Preference number: 5 (lower is better) Translates to: GGHSSVTHYRQSKGL*ELPGRGFHICTAIL Trigger: AAGAATGGCCGTGCATATGTGGAATCCCCGGCCCGGAAGCTCTCACAGTCCTTTGCTCTGCCTATAATGGGTGACACTGCTGTGACCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 90 bp | CACCAGCTGCTCTTTCACCCGCACTGGGTTGACAATCTGAGCCACTaGTGCGTCCACACGTTGACGAAGCTCCTCAGTGGAAAGGGAACT | + |
|
Preference number: 5 (lower is better) Translates to: HQLLFHPHWVDNLSH*CVHTLTKLLSGKGT Trigger: AGTTCCCTTTCCACTGAGGAGCTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGAAAGAGCAGCTGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 90 bp | GATCTGGGTTTTCAGCTGCTCCACCAGCTGCTCTTTCACCCGCACTaGGTTGACAATCTGAGCCACTGCTGCGTCCACACGTTGACGAAG | + |
|
Preference number: 5 (lower is better) Translates to: DLGFQLLHQLLFHPH*VDNLSHCCVHTLTK Trigger: CTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGAAAGAGCAGCTGGTGGAGCAGCTGAAAACCCAGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CAA 90 bp | AAGGTCAGTCAGTGTCTTCCAGAACTCCCTCATACAGCAAGAGAAGGGTGGGCACACCTTCCCGCTGGCTaGGCACTCACAGTGTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: KVSQCLPELPHTAREGWAHLPAG*ALTVST Trigger: GGTGGACACTGTGAGTGCCAAGCCAGCGGGAAGGTG...TGCCCACCCTTCTCTTGCTGTATGAGGGAGTTCTGGAAGACACTGACTGACCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CAA 90 bp | CCTCATACAGCAAGAGAAGGGTGGGCACAACCCACATTTTCTAAAATTCAGACACCTCTGCCACAAGGTTaGAGGGATCTGGCCCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PHTAREGWAQPTFSKIQTPLPQG*RDLARG Trigger: GCCACGGGCCAGATCCCTCAAACCTTGTGGCAGAGG...TGTCTGAATTTTAGAAAATGTGGGTTGTGCCCACCCTTCTCTTGCTGTATGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CAA 90 bp | CACGGTGAGTTGGGCATTAGCTGTGTGGTAATTGATTTTGTTACCACAGGCTCCACAGGAAGGCTGAACTaGAGGCTGCTAAGGCGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: HGELGISCVVIDFVTTGSTGRLN*RLLRRL Trigger: CAGCCGCCTTAGCAGCCTCAAGTTCAGCCTTCCTGT...GGAGCCTGTGGTAACAAAATCAATTACCACACAGCTAATGCCCAACTCACCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS-3UTR CAA 90 bp | TCACTTCTGAAGACTGGGTCAGTCCTGAGAGGCCCACGGAAGAAAGTGACTTTCGCTTCCCACTTCATCTaGGATGAAGCTGATGAACAT | + |
|
Preference number: 5 (lower is better) Translates to: SLLKTGSVLRGPRKKVTFASHFI*DEADEH Trigger: ATGTTCATCAGCTTCATCCAAGATGAAGTGGGAAGC...GAAAGTCACTTTCTTCCGTGGGCCTCTCAGGACTGACCCAGTCTTCAGAAGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | GCCGGCGCCCCGCGCACTACCTGGCGCAGACGGAACTaGACCTGCGCGAAGTGCGAGGACAGCGCGAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: AGAPRTTWRRRN*TCAKCEDSASR Trigger: CCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 72 bp | AGACGCTGCTGCTCCGCCGGCGCCCCGCGCACTACCTaGCGCAGACGGAACTGCACCTGCGCGAAGTGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: RRCCSAGAPRTT*RRRNCTCAKCE Trigger: CTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGAGCAGCAGCGTCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | GCCCCGCGCACTACCTGGCGCAGACGGAACTGCACCTaGGCGAAGTGCGAGGACAGCGCGAGCAGGGCCGAA | + |
|
Preference number: 6 (lower is better) Translates to: APRTTWRRRNCT*AKCEDSASRAE Trigger: TTCGGCCCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 72 bp | TTCCAGCCGCCTCAGCGTGCGGACAGTCGCGTCGGATaGAGAGCCCGGAGCCGCTCCAGGCTCTTCGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: FQPPQRADSRVG*RARSRSRLFGC Trigger: GCAGCCGAAGAGCCTGGAGCGGCTCCGGGCTCTCCATCCGACGCGACTGTCCGCACGCTGAGGCGGCTGGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | AAGGCAAAGTCTTCGAGCTCGCGCAGGAGACGCTGCTaGTCCGCCGGCGCCCCGCGCACTACCTGGCGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: KAKSSSSRRRRC*SAGAPRTTWRR Trigger: TCTGCGCCAGGTAGTGCGCGGGGCGCCGGCGGAGCAGCAGCGTCTCCTGCGCGAGCTCGAAGACTTTGCCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 72 bp | TGCCGGGTCCTGGGGGCAGTGTACTGCCACCCACCCTaGTGGAGCCGATTCCCACCTTCCCGCTGGCTTGGC | + |
|
Preference number: 6 (lower is better) Translates to: CRVLGAVYCHPP*WSRFPPSRWLG Trigger: GCCAAGCCAGCGGGAAGGTGGGAATCGGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCGGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 72 bp | CGGGTCCTGGGGGCAGTGTACTGCCACCCACCCTGGTaGAGCCGATTCCCACCTTCCCGCTGGCTTGGCACT | + |
|
Preference number: 6 (lower is better) Translates to: RVLGAVYCHPPW*SRFPPSRWLGT Trigger: AGTGCCAAGCCAGCGGGAAGGTGGGAATCGGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | CGGCAGCACATCGCTTTCGTCACCGCCACAAGGGTCTaGCAGCCCCTCGTAACCCAGGACGTGAGGACAGCC | + |
|
Preference number: 6 (lower is better) Translates to: RQHIAFVTATRV*QPLVTQDVRTA Trigger: GGCTGTCCTCACGTCCTGGGTTACGAGGGGCTGGCAGACCCTTGTGGCGGTGACGAAAGCGATGTGCTGCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | CCCCGTCTCCCGGGCTCTCTTGGCATCTTCTGCCTTTaGTTTGCCGGGTCCTGGGGGCAGTGTACTGCCACC | + |
|
Preference number: 6 (lower is better) Translates to: PRLPGSLGIFCL*FAGSWGQCTAT Trigger: GGTGGCAGTACACTGCCCCCAGGACCCGGCAAAGCAAAGGCAGAAGATGCCAAGAGAGCCCGGGAGACGGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | AAGATCTGGAGCACAGCCAGCGCTCGCCGCATCAGGTaGAGCCCCGTCTCCCGGGCTCTCTTGGCATCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: KIWSTASARRIR*SPVSRALLASS Trigger: AGAAGATGCCAAGAGAGCCCGGGAGACGGGGCTGCACCTGATGCGGCGAGCGCTGGCTGTGCTCCAGATCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS CCA 72 bp | TCTCTTGGCATCTTCTGCCTTTGCTTTGCCGGGTCCTaGGGGCAGTGTACTGCCACCCACCCTGGTGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SLGIFCLCFAGS*GQCTATHPGGA Trigger: GGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCGGCAAAGCAAAGGCAGAAGATGCCAAGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS GCA 72 bp | CTCTTTCACCCGCACTGGGTTGACAATCTGAGCCACTaGTGCGTCCACACGTTGACGAAGCTCCTCAGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LFHPHWVDNLSH*CVHTLTKLLSG Trigger: TCCACTGAGGAGCTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGAAAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
||
| CDS TCA 72 bp | AGCAGTGTCACCCATTATAGGCAGAGCAAAGGACTGTaGGAGCTTCCGGGCCGGGGATTCCACATATGCACG | + |
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Preference number: 6 (lower is better) Translates to: SSVTHYRQSKGL*ELPGRGFHICT Trigger: CGTGCATATGTGGAATCCCCGGCCCGGAAGCTCTCACAGTCCTTTGCTCTGCCTATAATGGGTGACACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS GCA 72 bp | TTTCACCCGCACTGGGTTGACAATCTGAGCCACTGCTaGGTCCACACGTTGACGAAGCTCCTCAGTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: FHPHWVDNLSHC*VHTLTKLLSGK Trigger: CTTTCCACTGAGGAGCTTCGTCAACGTGTGGACGCAGCAGTGGCTCAGATTGTCAACCCAGTGCGGGTGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS GCA 72 bp | ATGAACATCTCAAGGTCCCGGATCTGGGTTTTCAGCTaGTCCACCAGCTGCTCTTTCACCCGCACTGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: MNISRSRIWVFS*STSCSFTRTGL Trigger: CAACCCAGTGCGGGTGAAAGAGCAGCTGGTGGAGCAGCTGAAAACCCAGATCCGGGACCTTGAGATGTTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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| CDS CAA 72 bp | GTCAGCACCAGGTGGATGGCTGTCAGAAGGCTCTGTTaGGGGGTCACAGCAGTGTCACCCATTATAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: VSTRWMAVRRLC*GVTAVSPIIGR Trigger: TCTGCCTATAATGGGTGACACTGCTGTGACCCCCAAACAGAGCCTTCTGACAGCCATCCACCTGGTGCTGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040561.6 |
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