RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RUBCNL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034959

Ensembl transcript IDs: ENSMUST00000036072.8

Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCAAATGTGGTAACATCATaGGAGGTTTGGAACAACTTT +
Preference number: 2 (lower is better)
Translates to: LVPLPSFVAPIHFTNNTSNVVTS*EVWNNF
Trigger: AAAGTTGTTCCAAACCTCTCATGATGTTACCACATT...TGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
3UTR-3UTR GCA 90 bp TCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCAGTTAAGTCTTGAAAGCATTAAATaGGTACAAGAGGGCAATTTT +
Preference number: 2 (lower is better)
Translates to: SFVAPIHFTNNTSPCQLSLESIK*VQEGNF
Trigger: AAAATTGCCCTCTTGTACGCATTTAATGCTTTCAAG...ACTTAACTGACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
3UTR CCA 72 bp GGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTaGCGCCAATCCATTTCACAAACAACACATCACCTT +
Preference number: 3 (lower is better)
Translates to: GQTEFLCHFPPL*RQSISQTTHHL
Trigger: AAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
3UTR-3UTR CAA 90 bp TGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCAAACTTCCATACTCCTaGAAAGCATTAAATGCGTAC +
Preference number: 3 (lower is better)
Translates to: CATSLLCGANPFHKQHITKLPYS*KALNAY
Trigger: GTACGCATTTAATGCTTTCAAGGAGTATGGAAGTTT...GGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
3UTR-3UTR CAA 90 bp ATTCAACAGTCGTCTTTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTTACAAGAGGGCAATTTaGGTCCTCTTTTTCTTACTA +
Preference number: 3 (lower is better)
Translates to: IQQSSLTKAWPNRILVPLYKRAI*VLFFLL
Trigger: TAGTAAGAAAAAGAGGACCAAAATTGCCCTCTTGTA...AAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAAAGACGACTGTTGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp CAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAACAACTTTGGGCCTCTCAGCCACTGGGCTaGCCTGGAGTGCAGCACAAC +
Preference number: 4 (lower is better)
Translates to: QEQTQCGNIMRGLEQLWASQPLG*PGVQHN
Trigger: GTTGTGCTGCACTCCAGGTCAGCCCAGTGGCTGAGA...GGCCCAAAGTTGTTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp AAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCTCTCTGGCTGCTGTTaGTTCGGGAGGTTGCACTTC +
Preference number: 4 (lower is better)
Translates to: KAWPNRILVPLPSFVAPILSGCC*FGRLHF
Trigger: GAAGTGCAACCTCCCGAATCAACAGCAGCCAGAGAG...GATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp CTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTGGAAGGCACGGTTaGTCCCTTCACAGAGGTCCA +
Preference number: 4 (lower is better)
Translates to: LVPLPSFVAPIHFTNNTSPGRHG*SLHRGP
Trigger: TGGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGG...TGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp GGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCATCCAAGCATGGCTTCTaGTGCTGCTCCGAGCATCAC +
Preference number: 4 (lower is better)
Translates to: GQTEFLCHFPPLWRQSISSKHGF*CCSEHH
Trigger: GTGATGCTCGGAGCAGCAGCAGAAGCCATGCTTGGA...TGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp ATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACAAAGGGTCTCAGCCACTaGGCTGACCTGGAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: ILVPLPSFVAPIHFTNNTKGLSH*ADLECS
Trigger: GCTGCACTCCAGGTCAGCCCAGTGGCTGAGACCCTT...TGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp CAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAACAACTTTGGGCCGCACACACAGCGGGTTaGTCCAGGAAGCTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: QEQTQCGNIMRGLEQLWAAHTAG*SRKLCV
Trigger: GACACAAAGCTTCCTGGATCAACCCGCTGTGTGTGC...GGCCCAAAGTTGTTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp CCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCTCGGAACAACTCTCTaGCTAAGCACCCAGCAGGAC +
Preference number: 4 (lower is better)
Translates to: PLPSFVAPIHFTNNTSPCLGTTL*LSTQQD
Trigger: GTCCTGCTGGGTGCTTAGCCAGAGAGTTGTTCCGAG...ACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp TGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCCTACAAGTCGTGGTCTaGAATGGGAAGATGACCGTC +
Preference number: 4 (lower is better)
Translates to: CATSLLCGANPFHKQHITLQVVV*NGKMTV
Trigger: GACGGTCATCTTCCCATTTCAGACCACGACTTGTAG...GGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp CAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAACAACTTTGGGCCGTTCTGGGCCACCACTaGTATGTCCCTCTTGATTGG +
Preference number: 4 (lower is better)
Translates to: QEQTQCGNIMRGLEQLWAVLGHH*YVPLDW
Trigger: CCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAAC...GGCCCAAAGTTGTTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp CAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAACAACTTTGGGCCGACTCTGCAGATGAGTaGCAGCTGGCACAGAAGTAC +
Preference number: 4 (lower is better)
Translates to: QEQTQCGNIMRGLEQLWADSADE*QLAQKY
Trigger: GTACTTCTGTGCCAGCTGCCACTCATCTGCAGAGTC...GGCCCAAAGTTGTTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp GAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACAGATGAGTGGCAGCTaGCACAGAAGTACTTCCCGA +
Preference number: 4 (lower is better)
Translates to: EFLCHFPPLWRQSISQTTQMSGS*HRSTSR
Trigger: TCGGGAAGTACTTCTGTGCCAGCTGCCACTCATCTG...TGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp TCAACAGTCGTCTTTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCTTTCCCCCGGAGCAATaGGCAGAGTTGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: STVVFNKSLAKQNSCATSFPPEQ*AELLQM
Trigger: CATCTGCAGCAACTCTGCTCATTGCTCCGGGGGAAA...GGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAAAGACGACTGTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp GGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACTGGCAATTAACTTCTaGCAGCATCCAGCACTTACA +
Preference number: 4 (lower is better)
Translates to: GQTEFLCHFPPLWRQSISLAINF*QHPALT
Trigger: TGTAAGTGCTGGATGCTGTCAGAAGTTAATTGCCAG...TGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp GAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACAGTCTTGGGGTTTTTaGGCAGAGATTCCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: EFLCHFPPLWRQSISQTTQSWGF*AEIPAE
Trigger: TTCAGCAGGAATCTCTGCTCAAAAACCCCAAGACTG...TGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp GCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATATCTGCAGCCTTTCGTaGTGTCATTATATTTCCCAA +
Preference number: 4 (lower is better)
Translates to: AWPNRILVPLPSFVAPIHICSLS*CHYISQ
Trigger: TTGGGAAATATAATGACATCACGAAAGGCTGCAGAT...ATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp ATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCTGAAATGGGAAGATaGCCGTCGTGCTCTGACAAA +
Preference number: 4 (lower is better)
Translates to: ILVPLPSFVAPIHFTNNTSEMGR*PSCSDK
Trigger: TTTGTCAGAGCACGACGGTCATCTTCCCATTTCAGA...TGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp CTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCAGTTAAGTTCTGGAAACACTGTTTGTaGAAGCAGGCCCTGCACGCT +
Preference number: 4 (lower is better)
Translates to: LCGANPFHKQHITLSVKFWKHCL*KQALHA
Trigger: AGCGTGCAGGGCCTGCTTTCACAAACAGTGTTTCCA...GAACTTAACTGACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp TGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCCCATTTTTCCAGGTATaGAGTGAACGTGCTCAAAAC +
Preference number: 4 (lower is better)
Translates to: CATSLLCGANPFHKQHITPFFQV*SERAQN
Trigger: GTTTTGAGCACGTTCACTCCATACCTGGAAAAATGG...GGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp CTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCAGTTAAGTTCTGTGTCCCATCTCTCTaGCTGCTGTTGATTCGGGAG +
Preference number: 4 (lower is better)
Translates to: LCGANPFHKQHITLSVKFCVPSL*LLLIRE
Trigger: CTCCCGAATCAACAGCAGCCAGAGAGATGGGACACA...GAACTTAACTGACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp TTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCATCAGTCAAGTGGCTaGGAACTTGCTCAAACTCCT +
Preference number: 4 (lower is better)
Translates to: LTKAWPNRILVPLPSFVAHQSSG*ELAQTP
Trigger: AGGAGTTTGAGCAAGTTCCCAGCCACTTGACTGATG...CGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp GGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCATCCATGGAGAATATGTaGCATTCATCAGTCAAGTGG +
Preference number: 4 (lower is better)
Translates to: GQTEFLCHFPPLWRQSISSMENM*HSSVKW
Trigger: CCACTTGACTGATGAATGCCACATATTCTCCATGGA...TGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
3UTR CAA 72 bp CTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTaGTGGCGCCAATCCATTTCACAAACAACACATCAC +
Preference number: 4 (lower is better)
Translates to: LGQTEFLCHFPP*WRQSISQTTHH
Trigger: GTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp CCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCTCTTGATTGGTGGGTaGACAGTAAGTATGATTTGG +
Preference number: 4 (lower is better)
Translates to: PLPSFVAPIHFTNNTSPCLLIGG*TVSMIW
Trigger: CCAAATCATACTTACTGTTCACCCACCAATCAAGAG...ACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp TTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGATGACCGTCGTGCTCTaGCAAAACTCACAAATGAAG +
Preference number: 4 (lower is better)
Translates to: LTKAWPNRILVPLPSFVAMTVVL*QNSQMK
Trigger: CTTCATTTGTGAGTTTTGTCAGAGCACGACGGTCAT...CGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp TCCTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCAGTTAAGTAGCCTCACATCCAATTaGCAAGCAGGTTGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: SFVAPIHFTNNTSPCQLSSLTSN*QAGWSV
Trigger: CACTGACCAACCTGCTTGCCAATTGGATGTGAGGCT...ACTTAACTGACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp ATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACAGTCTTTAAGCAAAGGTaGCAACAGTCCTTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: ILVPLPSFVAPIHFTNNTVFKQR*QQSFLG
Trigger: ACCAAGAAAGGACTGTTGGCACCTTTGCTTAAAGAC...TGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp TCAACAGTCGTCTTTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCCAGTCTTCAGTTCCTaGGACCCTAGACTTAAGCAT +
Preference number: 4 (lower is better)
Translates to: STVVFNKSLAKQNSCATSPVFSS*DPRLKH
Trigger: ATGCTTAAGTCTAGGGTCCCAGGAACTGAAGACTGG...GGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAAAGACGACTGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp GCCAGTAGCAGCAAAACAATGTCAAACATTGTAAACAAACCCTTATCAACAACCTTTCCAGGTATGGAGTaGACGTGCTCAAAACACAGC +
Preference number: 4 (lower is better)
Translates to: ASSSKTMSNIVNKPLSTTFPGME*TCSKHS
Trigger: GCTGTGTTTTGAGCACGTTCACTCCATACCTGGAAA...GGTTGTTGATAAGGGTTTGTTTACAATGTTTGACATTGTTTTGCTGCTACTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR TCA 90 bp ATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACACATATTCTCTATTACTaGGATAATGATGTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: ILVPLPSFVAPIHFTNNTHILYY*DNDVCS
Trigger: GCTGCAGACATCATTATCTCAGTAATAGAGAATATG...TGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp ATTCAACAGTCGTCTTTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCAGTTCCTTAGCTTTTaGATAGAGGCTGTGATGGCC +
Preference number: 4 (lower is better)
Translates to: IQQSSLTKAWPNRILVPLQFLSF*IEAVMA
Trigger: GGCCATCACAGCCTCTATGCAAAAGCTAAGGAACTG...AAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAAAGACGACTGTTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR GCA 90 bp CTTTGTGGCGCCAATCCATTTCACAAACAACACATCACCTTGTCAGTTAAGTTCCACTGTCAGCAAACCTaGAAGTCTTCAATAGCTTCT +
Preference number: 4 (lower is better)
Translates to: LCGANPFHKQHITLSVKFHCQQT*KSSIAS
Trigger: AGAAGCTATTGAAGACTTGCAGGTTTGCTGACAGTG...GAACTTAACTGACAAGGTGATGTGTTGTTTGTGAAATGGATTGGCGCCACAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp AATGAATGTTACCAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAAGTCCCTCTTGATTGGTaGGTGAACAGTAAGTATGAT +
Preference number: 4 (lower is better)
Translates to: NECYQEQTQCGNIMRGLEVPLDW*VNSKYD
Trigger: ATCATACTTACTGTTCACCCACCAATCAAGAGGGAC...TTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTGGTAACATTCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CCA 90 bp CAGCAAAACAATGTCAAACATTGTAAACAAACCCTTATCAACAACCCTATACCTCATTCATCAGTCAAGTaGCTGGGAACTTGCTCAAAC +
Preference number: 4 (lower is better)
Translates to: QQNNVKHCKQTLINNPIPHSSVK*LGTCSN
Trigger: GTTTGAGCAAGTTCCCAGCCACTTGACTGATGAATG...AGGTATAGGGTTGTTGATAAGGGTTTGTTTACAATGTTTGACATTGTTTTGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 90 bp CATCCAATTGGCAAGCAGGTTGGTCAGTGTCCTGGAAGGCACGGTTaGTCCCTTCACAGAGGTCCACAGGAGAGTCTCCCCAGCCTATGG +
Preference number: 5 (lower is better)
Translates to: HPIGKQVGQCPGRHG*SLHRGPQESLPSLW
Trigger: CCATAGGCTGGGGAGACTCTCCTGTGGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp TCATCCCCGACTCCTGAGCTAGCTGTGGTCGGTGAGCCTGGCAGCTaGCAATTAACTTCTGACAGCATCCAGCACTTACAGAACCCTCGG +
Preference number: 5 (lower is better)
Translates to: SSPTPELAVVGEPGS*QLTSDSIQHLQNPR
Trigger: CCGAGGGTTCTGTAAGTGCTGGATGCTGTCAGAAGTTAATTGCCAGCTGCCAGGCTCACCGACCACAGCTAGCTCAGGAGTCGGGGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp CACATCGTCAGGATCCGCGCAGGGATACAAGACTCTGCAGATGAGTaGCAGCTGGCACAGAAGTACTTCCCGAGATACTCACAGTACCGG +
Preference number: 5 (lower is better)
Translates to: HIVRIRAGIQDSADE*QLAQKYFPRYSQYR
Trigger: CCGGTACTGTGAGTATCTCGGGAAGTACTTCTGTGCCAGCTGCCACTCATCTGCAGAGTCTTGTATCCCTGCGCGGATCCTGACGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp GTCCCACATCGTCAGGATCCGCGCAGGGATACAAGACTCTGCAGATaGGTGGCAGCTGGCACAGAAGTACTTCCCGAGATACTCACAGTA +
Preference number: 5 (lower is better)
Translates to: VPHRQDPRRDTRLCR*VAAGTEVLPEILTV
Trigger: TACTGTGAGTATCTCGGGAAGTACTTCTGTGCCAGCTGCCACTCATCTGCAGAGTCTTGTATCCCTGCGCGGATCCTGACGATGTGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp ATGTTGCTGCAGTGGGCAAGCTCTCCAAATGTTGTCTCCGGGCTATaGTCCTGGCACAGCGCGGGCATCTCGAAGACTGGAAACACTGTT +
Preference number: 5 (lower is better)
Translates to: MLLQWASSPNVVSGL*SWHSAGISKTGNTV
Trigger: AACAGTGTTTCCAGTCTTCGAGATGCCCGCGCTGTGCCAGGATCATAGCCCGGAGACAACATTTGGAGAGCTTGCCCACTGCAGCAACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GGTTGCTCCCTTCACAGAGGTCCACAGGAGAGTCTCCCCAGCCTATaGACTGGGACACCATTTTTCCAGGTATGGAGTGAACGTGCTCAA +
Preference number: 5 (lower is better)
Translates to: GCSLHRGPQESLPSL*TGTPFFQVWSERAQ
Trigger: TTGAGCACGTTCACTCCATACCTGGAAAAATGGTGTCCCAGTCCATAGGCTGGGGAGACTCTCCTGTGGACCTCTGTGAAGGGAGCAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GAAGCTTTGTGTCTTAGGAGCCTCACATCCAATTGGCAAGCAGGTTaGTCAGTGTCCTGGAAGGCACGGTTGCTCCCTTCACAGAGGTCC +
Preference number: 5 (lower is better)
Translates to: EALCLRSLTSNWQAG*SVSWKARLLPSQRS
Trigger: GGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATGTGAGGCTCCTAAGACACAAAGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GGGTTGATCCAGGAAGCTTTGTGTCTTAGGAGCCTCACATCCAATTaGCAAGCAGGTTGGTCAGTGTCCTGGAAGGCACGGTTGCTCCCT +
Preference number: 5 (lower is better)
Translates to: GLIQEALCLRSLTSN*QAGWSVSWKARLLP
Trigger: AGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATGTGAGGCTCCTAAGACACAAAGCTTCCTGGATCAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GACAATATCGAAAGGCGCAAGGGAGAGGGAGTGTCCAGCACCACGTaGTTCTCACTGCTCTGCACGGTTGGTCTTTGGGGGCATAATTCT +
Preference number: 5 (lower is better)
Translates to: DNIERRKGEGVSSTT*FSLLCTVGLWGHNS
Trigger: AGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTGAGAACCACGTGGTGCTGGACACTCCCTCTCCCTTGCGCCTTTCGATATTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp TGGTTCTCACTGCTCTGCACGGTTGGTCTTTGGGGGCATAATTCTTaGAGTGGCTGCTGCACACACAGCGGGTTGATCCAGGAAGCTTTG +
Preference number: 5 (lower is better)
Translates to: WFSLLCTVGLWGHNS*SGCCTHSGLIQEAL
Trigger: CAAAGCTTCCTGGATCAACCCGCTGTGTGTGCAGCAGCCACTTCAAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTGAGAACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GAGATACTCACAGTACCGGAGCCTCTTCACAAACTTGGGCTGTATTaGAGTCCCACATCCAGCACAGAAGAAGTTCTGGGCCACCACTGC +
Preference number: 5 (lower is better)
Translates to: EILTVPEPLHKLGLY*SPTSSTEEVLGHHC
Trigger: GCAGTGGTGGCCCAGAACTTCTTCTGTGCTGGATGTGGGACTCCAATACAGCCCAAGTTTGTGAAGAGGCTCCGGTACTGTGAGTATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp TCACAAATGAAGCCCTTCCCCTGGCACAGCTCACAGCTGTCCACGTaGGCAAGAGAAGCTCTCAGGATGTCTTTAAGCAAAGGTGCCAAC +
Preference number: 5 (lower is better)
Translates to: SQMKPFPWHSSQLST*AREALRMSLSKGAN
Trigger: GTTGGCACCTTTGCTTAAAGACATCCTGAGAGCTTCTCTTGCCCACGTGGACAGCTGTGAGCTGTGCCAGGGGAAGGGCTTCATTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp GCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATGCCAACAGTCCTTTCTaGGTCCTGAGGAAGTCGTCC +
Preference number: 5 (lower is better)
Translates to: AWPNRILVPLPSFVAPIHANSPF*VLRKSS
Trigger: GGACGACTTCCTCAGGACCAAGAAAGGACTGTTGGC...ATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp TCAGCGGGCAGCATGAACGTCTCTAGTGGGAAGAAATTCCAAGCATaGCTTCTGCTGCTGCTCCGAGCATCACCATCATCTGTAGAAGCT +
Preference number: 5 (lower is better)
Translates to: SAGSMNVSSGKKFQA*LLLLLRASPSSVEA
Trigger: AGCTTCTACAGATGATGGTGATGCTCGGAGCAGCAGCAGAAGCCATGCTTGGAATTTCTTCCCACTAGAGACGTTCATGCTGCCCGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp TATGGGTATAAAAGGTCATTTCCGCTCCAGTCCCACGTAACCTGCTaGCGTCTTCTGTGTCCCATCTCTCTGGCTGCTGTTGATTCGGGA +
Preference number: 5 (lower is better)
Translates to: YGYKRSFPLQSHVTC*RLLCPISLAAVDSG
Trigger: TCCCGAATCAACAGCAGCCAGAGAGATGGGACACAGAAGACGCCAGCAGGTTACGTGGGACTGGAGCGGAAATGACCTTTTATACCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GCAGGCCCTGCACGCTGCACATCTTCTACAAGTCGTGGTCTGAAATaGGAAGATGACCGTCGTGCTCTGACAAAACTCACAAATGAAGCC +
Preference number: 5 (lower is better)
Translates to: AGPARCTSSTSRGLK*EDDRRALTKLTNEA
Trigger: GGCTTCATTTGTGAGTTTTGTCAGAGCACGACGGTCATCTTCCCATTTCAGACCACGACTTGTAGAAGATGTGCAGCGTGCAGGGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp GCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATGAGCCTCACATCCAATaGGCAAGCAGGTTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: AWPNRILVPLPSFVAPIHEPHIQ*ASRLVS
Trigger: ACTGACCAACCTGCTTGCCAATTGGATGTGAGGCTC...ATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp TTTGGGGGCATAATTCTTGAAGTGGCTGCTGCACACACAGCGGGTTaGTCCAGGAAGCTTTGTGTCTTAGGAGCCTCACATCCAATTGGC +
Preference number: 5 (lower is better)
Translates to: FGGIILEVAAAHTAG*SRKLCVLGASHPIG
Trigger: GCCAATTGGATGTGAGGCTCCTAAGACACAAAGCTTCCTGGATCAACCCGCTGTGTGTGCAGCAGCCACTTCAAGAATTATGCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp TCTTCTGTAGCCAGGAAGAAGTCACCCTCCTTTCCCCCGGAGCAATaGGCAGAGTTGCTGCAGATGACATCAGCAGTATTCTCAGACAGT +
Preference number: 5 (lower is better)
Translates to: SSVARKKSPSFPPEQ*AELLQMTSAVFSDS
Trigger: ACTGTCTGAGAATACTGCTGATGTCATCTGCAGCAACTCTGCTCATTGCTCCGGGGGAAAGGAGGGTGACTTCTTCCTGGCTACAGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp AGTAAGTATGATTTGGCATCGAGGGAGCACCCAGTCTTCAGTTCCTaGGACCCTAGACTTAAGCATGACTTCCCGAGCAGCATCCACACT +
Preference number: 5 (lower is better)
Translates to: SKYDLASREHPVFSS*DPRLKHDFPSSIHT
Trigger: AGTGTGGATGCTGCTCGGGAAGTCATGCTTAAGTCTAGGGTCCCAGGAACTGAAGACTGGGTGCTCCCTCGATGCCAAATCATACTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp ACAGAAGAAGTTCTGGGCCACCACTGCTATGTCCCTCTTGATTGGTaGGTGAACAGTAAGTATGATTTGGCATCGAGGGAGCACCCAGTC +
Preference number: 5 (lower is better)
Translates to: TEEVLGHHCYVPLDW*VNSKYDLASREHPV
Trigger: GACTGGGTGCTCCCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTCTTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp AGCACAGAAGAAGTTCTGGGCCACCACTGCTATGTCCCTCTTGATTaGTGGGTGAACAGTAAGTATGATTTGGCATCGAGGGAGCACCCA +
Preference number: 5 (lower is better)
Translates to: STEEVLGHHCYVPLD*WVNSKYDLASREHP
Trigger: TGGGTGCTCCCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTCTTCTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 90 bp TTATATGGGTATAAAAGGTCATTTCCGCTCCAGTCCCACGTAACCTaGTGGCGTCTTCTGTGTCCCATCTCTCTGGCTGCTGTTGATTCG +
Preference number: 5 (lower is better)
Translates to: LYGYKRSFPLQSHVT*WRLLCPISLAAVDS
Trigger: CGAATCAACAGCAGCCAGAGAGATGGGACACAGAAGACGCCAGCAGGTTACGTGGGACTGGAGCGGAAATGACCTTTTATACCCATATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 90 bp GGAAGTCGTCCATGGAGAATATGTGGCATTCATCAGTCAAGTGGCTaGGAACTTGCTCAAACTCCTTCAGCACACTGTCAGCAAACCTGC +
Preference number: 5 (lower is better)
Translates to: GSRPWRICGIHQSSG*ELAQTPSAHCQQTC
Trigger: GCAGGTTTGCTGACAGTGTGCTGAAGGAGTTTGAGCAAGTTCCCAGCCACTTGACTGATGAATGCCACATATTCTCCATGGACGACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp GAATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACAAGTGGCTGGGAACTaGCTCAAACTCCTTCAGCAC +
Preference number: 5 (lower is better)
Translates to: EFLCHFPPLWRQSISQTTQVAGN*LKLLQH
Trigger: GTGCTGAAGGAGTTTGAGCAAGTTCCCAGCCACTTG...TGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 90 bp CGTAACCTGCTGGCGTCTTCTGTGTCCCATCTCTCTGGCTGCTGTTaGTTCGGGAGGTTGCACTTCATATTCTCTATTACTGAGATAATG +
Preference number: 5 (lower is better)
Translates to: RNLLASSVSHLSGCC*FGRLHFIFSITEIM
Trigger: CATTATCTCAGTAATAGAGAATATGAAGTGCAACCTCCCGAATCAACAGCAGCCAGAGAGATGGGACACAGAAGACGCCAGCAGGTTACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 90 bp TATTGGAGTCCCACATCCAGCACAGAAGAAGTTCTGGGCCACCACTaGTATGTCCCTCTTGATTGGTGGGTGAACAGTAAGTATGATTTG +
Preference number: 5 (lower is better)
Translates to: YWSPTSSTEEVLGHH*YVPLDWWVNSKYDL
Trigger: CAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTCTTCTGTGCTGGATGTGGGACTCCAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 90 bp TCCATGGAGAATATGTGGCATTCATCAGTCAAGTGGCTGGGAACTTaGTCAAACTCCTTCAGCACACTGTCAGCAAACCTGCAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: SMENMWHSSVKWLGT*SNSFSTLSANLQVF
Trigger: GAAGACTTGCAGGTTTGCTGACAGTGTGCTGAAGGAGTTTGAGCAAGTTCCCAGCCACTTGACTGATGAATGCCACATATTCTCCATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp TTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGGAAGTGGCCACAGTCTaGGGGTTTTTGAGCAGAGAT +
Preference number: 5 (lower is better)
Translates to: LTKAWPNRILVPLPSFVAEVATV*GFLSRD
Trigger: ATCTCTGCTCAAAAACCCCAAGACTGTGGCCACTTC...CGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp CAGGAGCAGACACAATGTGGTAACATCATGAGAGGTTTGGAACAACTTTGGGCCAGAGAAATCGCTGACTaGGTACTTCCTGAAGTCCCA +
Preference number: 5 (lower is better)
Translates to: QEQTQCGNIMRGLEQLWAREIAD*VLPEVP
Trigger: TGGGACTTCAGGAAGTACCAAGTCAGCGATTTCTCT...GGCCCAAAGTTGTTCCAAACCTCTCATGATGTTACCACATTGTGTCTGCTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp TTAACAAAAGCTTGGCCAAACAGAATTCTTGTGCCACTTCCCTCCTTTGTGGCGTTGATCCAGGAAGCTTaGTGTCTTAGGAGCCTCACA +
Preference number: 5 (lower is better)
Translates to: LTKAWPNRILVPLPSFVALIQEA*CLRSLT
Trigger: TGTGAGGCTCCTAAGACACAAAGCTTCCTGGATCAA...CGCCACAAAGGAGGGAAGTGGCACAAGAATTCTGTTTGGCCAAGCTTTTGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp ATTCTTGTGCCACTTCCCTCCTTTGTGGCGCCAATCCATTTCACAAACAACACACTGAAGATGAACCTCTaGCTCTTCTGTAGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: ILVPLPSFVAPIHFTNNTLKMNL*LFCSQE
Trigger: TTCCTGGCTACAGAAGAGCAAGAGGTTCATCTTCAG...TGTGTTGTTTGTGAAATGGATTGGCGCCACAAAGGAGGGAAGTGGCACAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS-3UTR CAA 90 bp CAGCAAAACAATGTCAAACATTGTAAACAAACCCTTATCAACAACCCTATACCTCACTGCTCTGCACGGTaGGTCTTTGGGGGCATAATT +
Preference number: 5 (lower is better)
Translates to: QQNNVKHCKQTLINNPIPHCSAR*VFGGII
Trigger: AATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTG...AGGTATAGGGTTGTTGATAAGGGTTTGTTTACAATGTTTGACATTGTTTTGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp GGCAAGCAGGTTGGTCAGTGTCCTGGAAGGCACGGTTaGTCCCTTCACAGAGGTCCACAGGAGAGTCTCCCC +
Preference number: 6 (lower is better)
Translates to: GKQVGQCPGRHG*SLHRGPQESLP
Trigger: GGGGAGACTCTCCTGTGGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp TGGCAAGCAGGTTGGTCAGTGTCCTGGAAGGCACGGTaGCTCCCTTCACAGAGGTCCACAGGAGAGTCTCCC +
Preference number: 6 (lower is better)
Translates to: WQAGWSVSWKAR*LPSQRSTGESP
Trigger: GGGAGACTCTCCTGTGGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 90 bp GAGAGGGAGTGTCCAGCACCACGTGGTTCTCACTGCTCTGCACGGTaGGTCTTTGGGGGCATAATTCTTGAAGTGGCTGCTGCACACACA +
Preference number: 6 (lower is better)
Translates to: ERECPAPRGSHCSAR*VFGGIILEVAAAHT
Trigger: TGTGTGTGCAGCAGCCACTTCAAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTGAGAACCACGTGGTGCTGGACACTCCCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp CTGCTCTGCACGGTTGGTCTTTGGGGGCATAATTCTTaGAGTGGCTGCTGCACACACAGCGGGTTGATCCAG +
Preference number: 6 (lower is better)
Translates to: LLCTVGLWGHNS*SGCCTHSGLIQ
Trigger: CTGGATCAACCCGCTGTGTGTGCAGCAGCCACTTCAAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp GACCTGGAGTGCAGCACAACCTTCACAGCCAGTGTGTaGAGAAGCCGAGGAGCCTGGCTCCTGCTTTATATG +
Preference number: 6 (lower is better)
Translates to: DLECSTTFTASV*RSRGAWLLLYM
Trigger: CATATAAAGCAGGAGCCAGGCTCCTCGGCTTCTTCACACACTGGCTGTGAAGGTTGTGCTGCACTCCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp AGGGAGAGGGAGTGTCCAGCACCACGTGGTTCTCACTaGTCTGCACGGTTGGTCTTTGGGGGCATAATTCTT +
Preference number: 6 (lower is better)
Translates to: RERECPAPRGSH*SARLVFGGIIL
Trigger: AAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTGAGAACCACGTGGTGCTGGACACTCCCTCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp CTCACATCCAATTGGCAAGCAGGTTGGTCAGTGTCCTaGAAGGCACGGTTGCTCCCTTCACAGAGGTCCACA +
Preference number: 6 (lower is better)
Translates to: LTSNWQAGWSVS*KARLLPSQRST
Trigger: TGTGGACCTCTGTGAAGGGAGCAACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp GATTTGGCATCGAGGGAGCACCCAGTCTTCAGTTCCTaGGACCCTAGACTTAAGCATGACTTCCCGAGCAGC +
Preference number: 6 (lower is better)
Translates to: DLASREHPVFSS*DPRLKHDFPSS
Trigger: GCTGCTCGGGAAGTCATGCTTAAGTCTAGGGTCCCAGGAACTGAAGACTGGGTGCTCCCTCGATGCCAAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp GCCAGGAAGAAGTCACCCTCCTTTCCCCCGGAGCAATaGGCAGAGTTGCTGCAGATGACATCAGCAGTATTC +
Preference number: 6 (lower is better)
Translates to: ARKKSPSFPPEQ*AELLQMTSAVF
Trigger: GAATACTGCTGATGTCATCTGCAGCAACTCTGCTCATTGCTCCGGGGGAAAGGAGGGTGACTTCTTCCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp CTCCGAGCATCACCATCATCTGTAGAAGCTGTCAAATaGGGAGACTCAGAACGGGCACTGCCCTCCTTAGGG +
Preference number: 6 (lower is better)
Translates to: LRASPSSVEAVK*GDSERALPSLG
Trigger: CCCTAAGGAGGGCAGTGCCCGTTCTGAGTCTCCTCATTTGACAGCTTCTACAGATGATGGTGATGCTCGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp CAGGAAGCTTTGTGTCTTAGGAGCCTCACATCCAATTaGCAAGCAGGTTGGTCAGTGTCCTGGAAGGCACGG +
Preference number: 6 (lower is better)
Translates to: QEALCLRSLTSN*QAGWSVSWKAR
Trigger: CCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATGTGAGGCTCCTAAGACACAAAGCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp ACTCCTGAGCTAGCTGTGGTCGGTGAGCCTGGCAGCTaGCAATTAACTTCTGACAGCATCCAGCACTTACAG +
Preference number: 6 (lower is better)
Translates to: TPELAVVGEPGS*QLTSDSIQHLQ
Trigger: CTGTAAGTGCTGGATGCTGTCAGAAGTTAATTGCCAGCTGCCAGGCTCACCGACCACAGCTAGCTCAGGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp TGTCCAGCACCACGTGGTTCTCACTGCTCTGCACGGTaGGTCTTTGGGGGCATAATTCTTGAAGTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: CPAPRGSHCSAR*VFGGIILEVAA
Trigger: AGCAGCCACTTCAAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAGTGAGAACCACGTGGTGCTGGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp CCTTTCCCCCGGAGCAATGAGCAGAGTTGCTGCAGATaGCATCAGCAGTATTCTCAGACAGTGGCATCTCAG +
Preference number: 6 (lower is better)
Translates to: PFPRSNEQSCCR*HQQYSQTVASQ
Trigger: CTGAGATGCCACTGTCTGAGAATACTGCTGATGTCATCTGCAGCAACTCTGCTCATTGCTCCGGGGGAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp TGGGCCACCACTGCTATGTCCCTCTTGATTGGTGGGTaGACAGTAAGTATGATTTGGCATCGAGGGAGCACC +
Preference number: 6 (lower is better)
Translates to: WATTAMSLLIGG*TVSMIWHRGST
Trigger: GGTGCTCCCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp TATAAAAGGTCATTTCCGCTCCAGTCCCACGTAACCTaGTGGCGTCTTCTGTGTCCCATCTCTCTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: YKRSFPLQSHVT*WRLLCPISLAA
Trigger: AGCAGCCAGAGAGATGGGACACAGAAGACGCCAGCAGGTTACGTGGGACTGGAGCGGAAATGACCTTTTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp CCCACATCCAGCACAGAAGAAGTTCTGGGCCACCACTaGTATGTCCCTCTTGATTGGTGGGTGAACAGTAAG +
Preference number: 6 (lower is better)
Translates to: PTSSTEEVLGHH*YVPLDWWVNSK
Trigger: CTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTCTTCTGTGCTGGATGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp CTTCACAGAGGTCCACAGGAGAGTCTCCCCAGCCTATaGACTGGGACACCATTTTTCCAGGTATGGAGTGAA +
Preference number: 6 (lower is better)
Translates to: LHRGPQESLPSL*TGTPFFQVWSE
Trigger: TTCACTCCATACCTGGAAAAATGGTGTCCCAGTCCATAGGCTGGGGAGACTCTCCTGTGGACCTCTGTGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp TGTATTGGAGTCCCACATCCAGCACAGAAGAAGTTCTaGGCCACCACTGCTATGTCCCTCTTGATTGGTGGG +
Preference number: 6 (lower is better)
Translates to: CIGVPHPAQKKF*ATTAMSLLIGG
Trigger: CCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTCTTCTGTGCTGGATGTGGGACTCCAATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp ACAGTACCGGAGCCTCTTCACAAACTTGGGCTGTATTaGAGTCCCACATCCAGCACAGAAGAAGTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: TVPEPLHKLGLY*SPTSSTEEVLG
Trigger: GCCCAGAACTTCTTCTGTGCTGGATGTGGGACTCCAATACAGCCCAAGTTTGTGAAGAGGCTCCGGTACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp CACAGTACCGGAGCCTCTTCACAAACTTGGGCTGTATaGGAGTCCCACATCCAGCACAGAAGAAGTTCTGGG +
Preference number: 6 (lower is better)
Translates to: HSTGASSQTWAV*ESHIQHRRSSG
Trigger: CCCAGAACTTCTTCTGTGCTGGATGTGGGACTCCAATACAGCCCAAGTTTGTGAAGAGGCTCCGGTACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp CCGAGATACTCACAGTACCGGAGCCTCTTCACAAACTaGGGCTGTATTGGAGTCCCACATCCAGCACAGAAG +
Preference number: 6 (lower is better)
Translates to: PRYSQYRSLFTN*GCIGVPHPAQK
Trigger: CTTCTGTGCTGGATGTGGGACTCCAATACAGCCCAAGTTTGTGAAGAGGCTCCGGTACTGTGAGTATCTCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp GTTCTGGGCCACCACTGCTATGTCCCTCTTGATTGGTaGGTGAACAGTAAGTATGATTTGGCATCGAGGGAG +
Preference number: 6 (lower is better)
Translates to: VLGHHCYVPLDW*VNSKYDLASRE
Trigger: CTCCCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp CGAGATACTCACAGTACCGGAGCCTCTTCACAAACTTaGGCTGTATTGGAGTCCCACATCCAGCACAGAAGA +
Preference number: 6 (lower is better)
Translates to: RDTHSTGASSQT*AVLESHIQHRR
Trigger: TCTTCTGTGCTGGATGTGGGACTCCAATACAGCCCAAGTTTGTGAAGAGGCTCCGGTACTGTGAGTATCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp GTCCCTCTTGATTGGTGGGTGAACAGTAAGTATGATTaGGCATCGAGGGAGCACCCAGTCTTCAGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: VPLDWWVNSKYD*ASREHPVFSSW
Trigger: CCAGGAACTGAAGACTGGGTGCTCCCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp TCGAAGACTGGAAACACTGTTTGTGAAAGCAGGCCCTaGACGCTGCACATCTTCTACAAGTCGTGGTCTGAA +
Preference number: 6 (lower is better)
Translates to: SKTGNTVCESRP*TLHIFYKSWSE
Trigger: TTCAGACCACGACTTGTAGAAGATGTGCAGCGTGCAGGGCCTGCTTTCACAAACAGTGTTTCCAGTCTTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp AGCATGAACGTCTCTAGTGGGAAGAAATTCCAAGCATaGCTTCTGCTGCTGCTCCGAGCATCACCATCATCT +
Preference number: 6 (lower is better)
Translates to: SMNVSSGKKFQA*LLLLLRASPSS
Trigger: AGATGATGGTGATGCTCGGAGCAGCAGCAGAAGCCATGCTTGGAATTTCTTCCCACTAGAGACGTTCATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp GAAGTTCTGGGCCACCACTGCTATGTCCCTCTTGATTaGTGGGTGAACAGTAAGTATGATTTGGCATCGAGG +
Preference number: 6 (lower is better)
Translates to: EVLGHHCYVPLD*WVNSKYDLASR
Trigger: CCTCGATGCCAAATCATACTTACTGTTCACCCACCAATCAAGAGGGACATAGCAGTGGTGGCCCAGAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CCA 72 bp GCACGCTGCACATCTTCTACAAGTCGTGGTCTGAAATaGGAAGATGACCGTCGTGCTCTGACAAAACTCACA +
Preference number: 6 (lower is better)
Translates to: ARCTSSTSRGLK*EDDRRALTKLT
Trigger: TGTGAGTTTTGTCAGAGCACGACGGTCATCTTCCCATTTCAGACCACGACTTGTAGAAGATGTGCAGCGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp ATAATTCTTGAAGTGGCTGCTGCACACACAGCGGGTTaGTCCAGGAAGCTTTGTGTCTTAGGAGCCTCACAT +
Preference number: 6 (lower is better)
Translates to: IILEVAAAHTAG*SRKLCVLGASH
Trigger: ATGTGAGGCTCCTAAGACACAAAGCTTCCTGGATCAACCCGCTGTGTGTGCAGCAGCCACTTCAAGAATTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 90 bp GTCCATGGAGAATATGTGGCATTCATCAGTCAAGTGGCTGGGAACTaGCTCAAACTCCTTCAGCACACTGTCAGCAAACCTGCAAGTCTT +
Preference number: 6 (lower is better)
Translates to: VHGEYVAFISQVAGN*LKLLQHTVSKPASL
Trigger: AAGACTTGCAGGTTTGCTGACAGTGTGCTGAAGGAGTTTGAGCAAGTTCCCAGCCACTTGACTGATGAATGCCACATATTCTCCATGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 90 bp GAAGCTCTCAGGATGTCTTTAAGCAAAGGTGCCAACAGTCCTTTCTaGGTCCTGAGGAAGTCGTCCATGGAGAATATGTGGCATTCATCA +
Preference number: 6 (lower is better)
Translates to: EALRMSLSKGANSPF*VLRKSSMENMWHSS
Trigger: TGATGAATGCCACATATTCTCCATGGACGACTTCCTCAGGACCAAGAAAGGACTGTTGGCACCTTTGCTTAAAGACATCCTGAGAGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp AGTGGAGATTTTCCTTTTCTACATCAGCGGGCAGCATaGACGTCTCTAGTGGGAAGAAATTCCAAGCATGGC +
Preference number: 6 (lower is better)
Translates to: SGDFPFLHQRAA*TSLVGRNSKHG
Trigger: GCCATGCTTGGAATTTCTTCCCACTAGAGACGTTCATGCTGCCCGCTGATGTAGAAAAGGAAAATCTCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS GCA 72 bp AATATGTGGCATTCATCAGTCAAGTGGCTGGGAACTTaGTCAAACTCCTTCAGCACACTGTCAGCAAACCTG +
Preference number: 6 (lower is better)
Translates to: NMWHSSVKWLGT*SNSFSTLSANL
Trigger: CAGGTTTGCTGACAGTGTGCTGAAGGAGTTTGAGCAAGTTCCCAGCCACTTGACTGATGAATGCCACATATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp GTTTTTGAGCAGAGATTCCTGCTGAAGATGAACCTCTaGCTCTTCTGTAGCCAGGAAGAAGTCACCCTCCTT +
Preference number: 6 (lower is better)
Translates to: VFEQRFLLKMNL*LFCSQEEVTLL
Trigger: AAGGAGGGTGACTTCTTCCTGGCTACAGAAGAGCAAGAGGTTCATCTTCAGCAGGAATCTCTGCTCAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS CAA 72 bp AGGATGTCTTTAAGCAAAGGTGCCAACAGTCCTTTCTaGGTCCTGAGGAAGTCGTCCATGGAGAATATGTGG +
Preference number: 6 (lower is better)
Translates to: RMSLSKGANSPF*VLRKSSMENMW
Trigger: CCACATATTCTCCATGGACGACTTCCTCAGGACCAAGAAAGGACTGTTGGCACCTTTGCTTAAAGACATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8
CDS TCA 72 bp CACTGTCAGCAAACCTGCAAGTCTTCAATAGCTTCTTaGTATGAAAAAGTTGCTCCTGAAGGTCCTTCACCC +
Preference number: 6 (lower is better)
Translates to: HCQQTCKSSIAS*YEKVAPEGPSP
Trigger: GGGTGAAGGACCTTCAGGAGCAACTTTTTCATATCAAGAAGCTATTGAAGACTTGCAGGTTTGCTGACAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036072.8