Pregenerated sensors for RTRAF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021807Ensembl transcript IDs: ENSMUST00000022341.7
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGGGTTGGCCCAGCGAAGTCCTCAGACTTTATTTATACTAAGGTaGTACAAAGAGTCCCCAAGTGCCTCTACAGAAGTATCCCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: MGLAQRSPQTLFILR*YKESPSASTEVSLK Trigger: TTTGAGGGATACTTCTGTAGAGGCACTTGGGGACTCTTTGTAGCACCTTAGTATAAATAAAGTCTGAGGACTTCGCTGGGCCAACCCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR GCA 90 bp | CTCCAGGACAAAGTTAAGGGTTGGAGTGAATGTAACCATAAAGGGTaGACAATAATTGTAGAAACAGAATACATGGACTCAAAACAGAGC | + |
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Preference number: 1 (lower is better) Translates to: LQDKVKGWSECNHKG*TIIVETEYMDSKQS Trigger: GCTCTGTTTTGAGTCCATGTATTCTGTTTCTACAATTATTGTGCACCCTTTATGGTTACATTCACTCCAACCCTTAACTTTGTCCTGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR CCA 90 bp | TTGTGGTCTAAATATCTATATTGTCTCCAGGACAAAGTTAAGGGTTaGAGTGAATGTAACCATAAAGGGTGCACAATAATTGTAGAAACA | + |
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Preference number: 1 (lower is better) Translates to: LWSKYLYCLQDKVKG*SECNHKGCTIIVET Trigger: TGTTTCTACAATTATTGTGCACCCTTTATGGTTACATTCACTCCAACCCTTAACTTTGTCCTGGAGACAATATAGATATTTAGACCACAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR-3UTR TCA 90 bp | GGCCCAGCGAAGTCCTCAGACTTTATTTATACTAAGGTGCTACAAAGAGTCCCCCCATCACTAGGCAGGTaGGAAGCTGACATCCTCATG | + |
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Preference number: 2 (lower is better) Translates to: GPAKSSDFIYTKVLQRVPPSLGR*EADILM Trigger: CATGAGGATGTCAGCTTCTCACCTGCCTAGTGATGG...GGGGACTCTTTGTAGCACCTTAGTATAAATAAAGTCTGAGGACTTCGCTGGGCC 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR-3UTR TCA 90 bp | GCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGTCAAAGTGTGACATCTaGTTTCCAAGCACATGCTGG | + |
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Preference number: 2 (lower is better) Translates to: ASTEVSLKSTPGKTPKMQSKCDI*FPSTCW Trigger: CCAGCATGTGCTTGGAAATCAGATGTCACACTTTGA...CTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR-3UTR CCA 90 bp | GCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGTTTCCAAGCACATGCTaGTGTAATGGTTCCCATCAC | + |
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Preference number: 2 (lower is better) Translates to: ASTEVSLKSTPGKTPKMQFPSTC*CNGSHH Trigger: GTGATGGGAACCATTACACCAGCATGTGCTTGGAAA...CTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR-3UTR GCA 90 bp | GGTGCTACAAAGAGTCCCCAAGTGCCTCTACAGAAGTATCCCTCAAAAGTACTCGTAAAACACCAAAGATaGAGCAGTTCTTCAATTTTC | + |
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Preference number: 2 (lower is better) Translates to: GATKSPQVPLQKYPSKVLVKHQR*SSSSIF Trigger: GAAAATTGAAGAACTGCTGCATCTTTGGTGTTTTAC...GAGTACTTTTGAGGGATACTTCTGTAGAGGCACTTGGGGACTCTTTGTAGCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR-3UTR CCA 90 bp | TATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGCAGTTCTTCAATTGACAAAGTTAAGGGTTaGAGTGAATGTAACCATAAA | + |
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Preference number: 2 (lower is better) Translates to: YPSKVLRVKHQRCSSSSIDKVKG*SECNHK Trigger: TTTATGGTTACATTCACTCCAACCCTTAACTTTGTC...AATTGAAGAACTGCTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR GCA 72 bp | GCCCAGCGAAGTCCTCAGACTTTATTTATACTAAGGTaGTACAAAGAGTCCCCAAGTGCCTCTACAGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: AQRSPQTLFILR*YKESPSASTEV Trigger: TACTTCTGTAGAGGCACTTGGGGACTCTTTGTAGCACCTTAGTATAAATAAAGTCTGAGGACTTCGCTGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR GCA 72 bp | TTTATTTATACTAAGGTGCTACAAAGAGTCCCCAAGTaGCTCTACAGAAGTATCCCTCAAAAGTACTCCGGG | + |
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Preference number: 3 (lower is better) Translates to: FIYTKVLQRVPK*LYRSIPQKYSG Trigger: CCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGCACTTGGGGACTCTTTGTAGCACCTTAGTATAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR GCA 72 bp | AAAGTTAAGGGTTGGAGTGAATGTAACCATAAAGGGTaGACAATAATTGTAGAAACAGAATACATGGACTCA | + |
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Preference number: 3 (lower is better) Translates to: KVKGWSECNHKG*TIIVETEYMDS Trigger: TGAGTCCATGTATTCTGTTTCTACAATTATTGTGCACCCTTTATGGTTACATTCACTCCAACCCTTAACTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| 3UTR CCA 72 bp | AAATATCTATATTGTCTCCAGGACAAAGTTAAGGGTTaGAGTGAATGTAACCATAAAGGGTGCACAATAATT | + |
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Preference number: 3 (lower is better) Translates to: KYLYCLQDKVKG*SECNHKGCTII Trigger: AATTATTGTGCACCCTTTATGGTTACATTCACTCCAACCCTTAACTTTGTCCTGGAGACAATATAGATATTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR CCA 90 bp | GTGCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCGGCCAGTCACTGCTGTaGATGTTTCTCAAGTTACCT | + |
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Preference number: 4 (lower is better) Translates to: VPLQKYPSKVLRVKHQRCGQSLL*MFLKLP Trigger: AGGTAACTTGAGAAACATCCACAGCAGTGACTGGCC...GCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR TCA 90 bp | GCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGGCTTCTTGCCGATCCTaGATCTTGAAAGGACAGTTA | + |
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Preference number: 4 (lower is better) Translates to: ASTEVSLKSTPGKTPKMQASCRS*ILKGQL Trigger: TAACTGTCCTTTCAAGATTCAGGATCGGCAAGAAGC...CTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR GCA 90 bp | GCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGGTTGATCAGTGGCTCTaGATTTTTAGCTGCGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ASTEVSLKSTPGKTPKMQVDQWL*IFSCVV Trigger: GACAACGCAGCTAAAAATGCAGAGCCACTGATCAAC...CTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR TCA 90 bp | GCCTCTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGTGTGTTAGACGTTCCTaGACCAAAATTCGAATTGCC | + |
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Preference number: 4 (lower is better) Translates to: ASTEVSLKSTPGKTPKMQCVRRS*TKIRIA Trigger: GGCAATTCGAATTTTGGTTCAGGAACGTCTAACACA...CTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAGAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR GCA 90 bp | CTACAGAAGTATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGCAGTCTCTGCATTTTTAGCTaGGTTGTCAGTATTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQKYPSKVLRVKHQRCSSLCIFS*VVSIFP Trigger: AGGAAAAATACTGACAACGCAGCTAAAAATGCAGAG...ACTGCTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATACTTCTGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR TCA 90 bp | TCCTCAGACTTTATTTATACTAAGGTGCTACAAAGAGTCCCCAAGTGCCTCTACTATTTACATCCAAGTTaGTCAGTGGCTCTGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: SSDFIYTKVLQRVPKCLYYLHPS*SVALHF Trigger: AAAATGCAGAGCCACTGATCAACTTGGATGTAAATA...GTAGAGGCACTTGGGGACTCTTTGTAGCACCTTAGTATAAATAAAGTCTGAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR CAA 90 bp | AAGGGTTGGAGTGAATGTAACCATAAAGGGTGCACAATAATTGTAGAAACAGAAAATTCTGTTTCATCTTaGCAGTTGAAGCCTGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: KGWSECNHKGCTIIVETENSVSS*QLKPEG Trigger: CCCCTCAGGCTTCAACTGCAAAGATGAAACAGAATT...TTCTGTTTCTACAATTATTGTGCACCCTTTATGGTTACATTCACTCCAACCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR CAA 90 bp | TATCCCTCAAAAGTACTCCGGGTAAAACACCAAAGATGCAGCAGTTCTTCAATTTTATTTACATCCAAGTaGATCAGTGGCTCTGCATTT | + |
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Preference number: 5 (lower is better) Translates to: YPSKVLRVKHQRCSSSSILFTSK*ISGSAF Trigger: AAATGCAGAGCCACTGATCAACTTGGATGTAAATAA...AATTGAAGAACTGCTGCATCTTTGGTGTTTTACCCGGAGTACTTTTGAGGGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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| CDS-3UTR CAA 90 bp | GAATGTAACCATAAAGGGTGCACAATAATTGTAGAAACAGAATACATGGACTCAGCATTTTTAGCTGCGTaGTCAGTATTTTTCCTGTTA | + |
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Preference number: 5 (lower is better) Translates to: ECNHKGCTIIVETEYMDSAFLAA*SVFFLL Trigger: TAACAGGAAAAATACTGACAACGCAGCTAAAAATGC...TGAGTCCATGTATTCTGTTTCTACAATTATTGTGCACCCTTTATGGTTACATTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022341.7 |
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