Pregenerated sensors for RTP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047531Ensembl transcript IDs: ENSMUST00000061030.10, ENSMUST00000231038.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTCGATGGAGGCTGGAGGTGGCTCTGCTCCCTCCAAGGGGAACCATaGAGGGCACATAAAGCTGAAAGCGACAGTGTCCAGATGGGACCT | + |
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Preference number: 1 (lower is better) Translates to: FDGGWRWLCSLQGEP*RAHKAESDSVQMGP Trigger: AGGTCCCATCTGGACACTGTCGCTTTCAGCTTTATGTGCCCTGCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR GCA 90 bp | AGATGCAAGCTGGCGCCTAGTTTTTCCTGTCCTGTTGTTCAGCGCTaGGTAGGGGTTCCCAGGGTAGACAAAGCAGAGGGTGGAAGACCT | + |
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Preference number: 1 (lower is better) Translates to: RCKLAPSFSCPVVQR*VGVPRVDKAEGGRP Trigger: AGGTCTTCCACCCTCTGCTTTGTCTACCCTGGGAACCCCTACGCAGCGCTGAACAACAGGACAGGAAAAACTAGGCGCCAGCTTGCATCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 90 bp | ATGGAAGAAGCAGGCTGTCCCTATGTATTCGATGGAGGCTGGAGGTaGCTCTGCTCCCTCCAAGGGGAACCATGCAGGGCACATAAAGCT | + |
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Preference number: 1 (lower is better) Translates to: MEEAGCPYVFDGGWR*LCSLQGEPCRAHKA Trigger: AGCTTTATGTGCCCTGCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 90 bp | TTCAGAATGGAAGAAGCAGGCTGTCCCTATGTATTCGATGGAGGCTaGAGGTGGCTCTGCTCCCTCCAAGGGGAACCATGCAGGGCACAT | + |
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Preference number: 1 (lower is better) Translates to: FRMEEAGCPYVFDGG*RWLCSLQGEPCRAH Trigger: ATGTGCCCTGCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTCCATTCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 90 bp | TCAGCATTTCAGAATGGAAGAAGCAGGCTGTCCCTATGTATTCGATaGAGGCTGGAGGTGGCTCTGCTCCCTCCAAGGGGAACCATGCAG | + |
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Preference number: 1 (lower is better) Translates to: SAFQNGRSRLSLCIR*RLEVALLPPRGTMQ Trigger: CTGCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTCCATTCTGAAATGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR TCA 90 bp | CTCCTTCGGATGCGGTGGTCAGACACCCTGGCTTTACTGACCCTCTaGGACATGACCTATTTTCTTGACAGAGTTTTGGCAAACTATTTC | + |
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Preference number: 1 (lower is better) Translates to: LLRMRWSDTLALLTL*DMTYFLDRVLANYF Trigger: GAAATAGTTTGCCAAAACTCTGTCAAGAAAATAGGTCATGTCTCAGAGGGTCAGTAAAGCCAGGGTGTCTGACCACCGCATCCGAAGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR TCA 90 bp | TTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCCAATTTAACATaGAAATGCAGAAATCACTGTTTATCGAGGAAACTGGGCTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: LGRDPESGTSHSNLT*KCRNHCLSRKLGFW Trigger: CCAGAAGCCCAGTTTCCTCGATAAACAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 90 bp | GGCAGACACAAACAGAAAAGCAGCCAATGTTTTGGTAGTGAAGTATaGAAGGCTGGCTCTAGGGATGTAGAAATGAGATTTCCATGGACT | + |
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Preference number: 1 (lower is better) Translates to: GRHKQKSSQCFGSEV*KAGSRDVEMRFPWT Trigger: AGTCCATGGAAATCTCATTTCTACATCCCTAGAGCCAGCCTTCCATACTTCACTACCAAAACATTGGCTGCTTTTCTGTTTGTGTCTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | AATCATTGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCCAATGATGGAGGCTGGAGGTaGCTCTGCTCCCTCCAAGGG | + |
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Preference number: 2 (lower is better) Translates to: NHCSGLGRDPESGTSHSNDGGWR*LCSLQG Trigger: CCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATC...ATTGGAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAATGATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | TTGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCCAATTTAACGTATTCGATGGAGGCTaGAGGTGGCTCTGCTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: LQRVGKGPRVRDQSLQFNVFDGG*RWLCSL Trigger: GAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATAC...GTTAAATTGGAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | ATCCTCAGCCGCATTTCCTCCTTCGGATGCGGTGGTCAGACACCCTGGCTTTACAGTAAAGGCTGGAGGTaGCAGCTGCAGATTTCAGAC | + |
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Preference number: 2 (lower is better) Translates to: ILSRISSFGCGGQTPWLYSKGWR*QLQISD Trigger: GTCTGAAATCTGCAGCTGCCACCTCCAGCCTTTACT...GTAAAGCCAGGGTGTCTGACCACCGCATCCGAAGGAGGAAATGCGGCTGAGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR GCA 90 bp | CCCCGAGTCAGGGACCAGTCACTCCAATTTAACATGAAAATGCAGAAATCACTGGGCTGGAGGTGGCTCTaGTCCCTCCAAGGGGAACCA | + |
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Preference number: 2 (lower is better) Translates to: PRVRDQSLQFNMKMQKSLGWRWL*SLQGEP Trigger: TGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCC...CAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR TCA 90 bp | CCCCGAGTCAGGGACCAGTCACTCCAATTTAACATGAAAATGCAGAAATCACTGCCTCTGGGGAGCACTTaGTGCCCAAACCCTTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: PRVRDQSLQFNMKMQKSLPLGST*CPNPWC Trigger: ACACCAAGGGTTTGGGCATCAAGTGCTCCCCAGAGG...CAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CAA 90 bp | GAAACTAATATAACCTACTCCCTCAATCCTGAGGAGATAAAATCATaGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTC | + |
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Preference number: 2 (lower is better) Translates to: ETNITYSLNPEEIKS*QRVGKGPRVRDQSL Trigger: GAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAATGATTTTATCTCCTCAGGATTGAGGGAGTAGGTTATATTAGTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | CCCCGAGTCAGGGACCAGTCACTCCAATTTAACATGAAAATGCAGAAATCACTGAGGGTGGAAGACCTCTaGGGAGCACTTGATGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: PRVRDQSLQFNMKMQKSLRVEDL*GALDAQ Trigger: TTGGGCATCAAGTGCTCCCCAGAGGTCTTCCACCCT...CAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | CCCCGAGTCAGGGACCAGTCACTCCAATTTAACATGAAAATGCAGAAATCACTGAGACAAAGCAGAGGGTaGAAGACCTCTGGGGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: PRVRDQSLQFNMKMQKSLRQSRG*KTSGEH Trigger: GTGCTCCCCAGAGGTCTTCCACCCTCTGCTTTGTCT...CAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CCA 90 bp | GGCCTCTATGGGGACAAATTCTGTATAAGCCTGACTGAGTTTGGAACTACTAAGCTCAGCATTTCAGAATaGAAGAAGCAGGCTGTCCCT | + |
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Preference number: 2 (lower is better) Translates to: GLYGDKFCISLTEFGTTKLSISE*KKQAVP Trigger: AGGGACAGCCTGCTTCTTCCATTCTGAAATGCTGAG...CTTAGTAGTTCCAAACTCAGTCAGGCTTATACAGAATTTGTCCCCATAGAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR TCA 90 bp | TTTGGCAAACTATTTCTAGACACAAAACAGATTTTAGCAAGAGATGCAAGCTGGGCCCTAGCGCCTGAGTaGAATCCTCAGCATTTCAGA | + |
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Preference number: 2 (lower is better) Translates to: FGKLFLDTKQILARDASWALAPE*NPQHFR Trigger: TCTGAAATGCTGAGGATTTCACTCAGGCGCTAGGGC...CCAGCTTGCATCTCTTGCTAAAATCTGTTTTGTGTCTAGAAATAGTTTGCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR GCA 72 bp | GGCTGGAGGTGGCTCTGCTCCCTCCAAGGGGAACCATaGAGGGCACATAAAGCTGAAAGCGACAGTGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: GWRWLCSLQGEP*RAHKAESDSVQ Trigger: CTGGACACTGTCGCTTTCAGCTTTATGTGCCCTGCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CAA 90 bp | TTGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCCAATTTAACACCTCTGGGGAGCACTaGATGCCCAAACCCTTGGTG | + |
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Preference number: 3 (lower is better) Translates to: LQRVGKGPRVRDQSLQFNTSGEH*MPKPLV Trigger: CACCAAGGGTTTGGGCATCAAGTGCTCCCCAGAGGT...GTTAAATTGGAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 72 bp | GAAGAAGCAGGCTGTCCCTATGTATTCGATGGAGGCTaGAGGTGGCTCTGCTCCCTCCAAGGGGAACCATGC | + |
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Preference number: 3 (lower is better) Translates to: EEAGCPYVFDGG*RWLCSLQGEPC Trigger: GCATGGTTCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR GCA 72 bp | CTGGCGCCTAGTTTTTCCTGTCCTGTTGTTCAGCGCTaGGTAGGGGTTCCCAGGGTAGACAAAGCAGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: LAPSFSCPVVQR*VGVPRVDKAEG Trigger: ACCCTCTGCTTTGTCTACCCTGGGAACCCCTACGCAGCGCTGAACAACAGGACAGGAAAAACTAGGCGCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 72 bp | CAGAATGGAAGAAGCAGGCTGTCCCTATGTATTCGATaGAGGCTGGAGGTGGCTCTGCTCCCTCCAAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: QNGRSRLSLCIR*RLEVALLPPRG Trigger: TCCCCTTGGAGGGAGCAGAGCCACCTCCAGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTCCATTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CAA 90 bp | AATCATTGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCCAATCACCCTTGTCTTCCATaGAGCAATGGCCTCTATGGG | + |
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Preference number: 3 (lower is better) Translates to: NHCSGLGRDPESGTSHSNHPCLP*SNGLYG Trigger: CCCATAGAGGCCATTGCTCAATGGAAGACAAGGGTG...ATTGGAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAATGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR TCA 72 bp | CCCACCTCTATCCTCATCCCAGCCCTAGCGCCTGAGTaGAATCCTCAGCATTTCAGAATGGAAGAAGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: PTSILIPALAPE*NPQHFRMEEAG Trigger: GCCTGCTTCTTCCATTCTGAAATGCTGAGGATTTCACTCAGGCGCTAGGGCTGGGATGAGGATAGAGGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR-3UTR CAA 90 bp | CCCCGAGTCAGGGACCAGTCACTCCAATTTAACATGAAAATGCAGAAATCACTGCCAATAGCTAATCCATaGGACAATGCGCCCTTGACC | + |
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Preference number: 3 (lower is better) Translates to: PRVRDQSLQFNMKMQKSLPIANP*DNAPLT Trigger: GGTCAAGGGCGCATTGTCCAATGGATTAGCTATTGG...CAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 72 bp | CATGAAAATGCAGAAATCACTGTTTATCGAGGAAACTaGGCTTCTGGAGATATTCCCGGCCTCGTTTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: HENAEITVYRGN*ASGDIPGLVSL Trigger: GAGAGAAACGAGGCCGGGAATATCTCCAGAAGCCCAGTTTCCTCGATAAACAGTGATTTCTGCATTTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR TCA 72 bp | GACCCCGAGTCAGGGACCAGTCACTCCAATTTAACATaGAAATGCAGAAATCACTGTTTATCGAGGAAACTG | + |
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Preference number: 3 (lower is better) Translates to: DPESGTSHSNLT*KCRNHCLSRKL Trigger: CAGTTTCCTCGATAAACAGTGATTTCTGCATTTTCATGTTAAATTGGAGTGACTGGTCCCTGACTCGGGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 72 bp | TTCATCTTAATTAATCTTAATCAGAGCAGCCACATATaGCCAATAGCTAATCCATTGGACAATGCGCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: FILINLNQSSHI*PIANPLDNAPL Trigger: CAAGGGCGCATTGTCCAATGGATTAGCTATTGGCCATATGTGGCTGCTCTGATTAAGATTAATTAAGATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CCA 72 bp | AAACAGAAAAGCAGCCAATGTTTTGGTAGTGAAGTATaGAAGGCTGGCTCTAGGGATGTAGAAATGAGATTT | + |
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Preference number: 3 (lower is better) Translates to: KQKSSQCFGSEV*KAGSRDVEMRF Trigger: AAATCTCATTTCTACATCCCTAGAGCCAGCCTTCCATACTTCACTACCAAAACATTGGCTGCTTTTCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR GCA 90 bp | ATCCTCAGCCGCATTTCCTCCTTCGGATGCGGTGGTCAGACACCCTGGCTTTACTGTTGCTCCAGGTACTaGTTCCAGCCAGGGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ILSRISSFGCGGQTPWLYCCSRY*FQPGPS Trigger: GCTGGGCCCTGGCTGGAAGCAGTACCTGGAGCAACA...GTAAAGCCAGGGTGTCTGACCACCGCATCCGAAGGAGGAAATGCGGCTGAGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR GCA 90 bp | ATAAAATCATTGCAGCGGGTTGGGAAGGGACCCCGAGTCAGGGACCAGTCACTCGGCTGGCTACGTGGATaGGGTACTGGCCACCATCCT | + |
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Preference number: 4 (lower is better) Translates to: IKSLQRVGKGPRVRDQSLGWLRG*GTGHHP Trigger: AGGATGGTGGCCAGTACCGCATCCACGTAGCCAGCC...GAGTGACTGGTCCCTGACTCGGGGTCCCTTCCCAACCCGCTGCAATGATTTTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR TCA 90 bp | CTCAGCATTTCAGAATGGAAGAAGCAGGCTGTCCCTATGTATTCGATGGAGGCTCACGCGCATGCGCACTaGGCCAACACGCTGGGCACG | + |
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Preference number: 4 (lower is better) Translates to: LSISEWKKQAVPMYSMEAHAHAH*ANTLGT Trigger: CGTGCCCAGCGTGTTGGCTCAGTGCGCATGCGCGTG...AGCCTCCATCGAATACATAGGGACAGCCTGCTTCTTCCATTCTGAAATGCTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CAA 72 bp | ATATGGCCAATAGCTAATCCATTGGACAATGCGCCCTaGACCATTCCAACCCCCTCAGCCCATCCCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: IWPIANPLDNAP*TIPTPSAHPHF Trigger: GAAGTGGGGATGGGCTGAGGGGGTTGGAATGGTCAAGGGCGCATTGTCCAATGGATTAGCTATTGGCCATAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CAA 72 bp | TGGAAGACCTCTGGGGAGCACTTGATGCCCAAACCCTaGGTGTTCATCTTCCTAGAAGTCACCCTTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: WKTSGEHLMPKP*VFIFLEVTLVF Trigger: GAAGACAAGGGTGACTTCTAGGAAGATGAACACCAAGGGTTTGGGCATCAAGTGCTCCCCAGAGGTCTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR TCA 90 bp | CTAAAGAGGAAACAAGTCTTGGAAACTAATATAACCTACTCCCTCAATCCTGAGACTGCAGGTAGACAATaGCCAGGCAGAGGGTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LKRKQVLETNITYSLNPETAGRQ*PGRGCP Trigger: GGGGCACCCTCTGCCTGGTCATTGTCTACCTGCAGT...CTCAGGATTGAGGGAGTAGGTTATATTAGTTTCCAAGACTTGTTTCCTCTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR CCA 90 bp | CTAAAGAGGAAACAAGTCTTGGAAACTAATATAACCTACTCCCTCAATCCTGAGTGCACGATGCCTTCCTaGCAGGCCTCGCAGAACTCA | + |
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Preference number: 4 (lower is better) Translates to: LKRKQVLETNITYSLNPECTMPS*QASQNS Trigger: TGAGTTCTGCGAGGCCTGCCAGGAAGGCATCGTGCA...CTCAGGATTGAGGGAGTAGGTTATATTAGTTTCCAAGACTTGTTTCCTCTTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR GCA 90 bp | CTCTATGGGGACAAATTCTGTATAAGCCTGACTGAGTTTGGAACTACTAAGGAAGCAGATTGCCATGTGTaGCAACACCAGGAACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LYGDKFCISLTEFGTTKEADCHV*QHQEQW Trigger: CCACTGTTCCTGGTGTTGGCACACATGGCAATCTGC...TTCCTTAGTAGTTCCAAACTCAGTCAGGCTTATACAGAATTTGTCCCCATAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CAA 72 bp | AATGTGGCAGACACAAACAGAAAAGCAGCCAATGTTTaGGTAGTGAAGTATGGAAGGCTGGCTCTAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: NVADTNRKAANV*VVKYGRLALGM Trigger: CATCCCTAGAGCCAGCCTTCCATACTTCACTACCAAAACATTGGCTGCTTTTCTGTTTGTGTCTGCCACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| 3UTR CAA 72 bp | GGTGTTCATCTTCCTAGAAGTCACCCTTGTCTTCCATaGAGCAATGGCCTCTATGGGGACAAATTCTGTATA | + |
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Preference number: 4 (lower is better) Translates to: GVHLPRSHPCLP*SNGLYGDKFCI Trigger: TATACAGAATTTGTCCCCATAGAGGCCATTGCTCAATGGAAGACAAGGGTGACTTCTAGGAAGATGAACACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR TCA 90 bp | CTAAAGAGGAAACAAGTCTTGGAAACTAATATAACCTACTCCCTCAATCCTGAGGCATGTGGAAGAGAATaGCGACATTGGCAGATTGCC | + |
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Preference number: 4 (lower is better) Translates to: LKRKQVLETNITYSLNPEACGRE*RHWQIA Trigger: GGCAATCTGCCAATGTCGTCATTCTCTTCCACATGC...CTCAGGATTGAGGGAGTAGGTTATATTAGTTTCCAAGACTTGTTTCCTCTTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS-3UTR TCA 90 bp | TTTGGCAAACTATTTCTAGACACAAAACAGATTTTAGCAAGAGATGCAAGCTGGCAGGCACCAACGAAATaGGAAGAAGCTGGAGATAAA | + |
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Preference number: 4 (lower is better) Translates to: FGKLFLDTKQILARDASWQAPTK*EEAGDK Trigger: TTTATCTCCAGCTTCTTCTCATTTCGTTGGTGCCTG...CCAGCTTGCATCTCTTGCTAAAATCTGTTTTGTGTCTAGAAATAGTTTGCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061030.10 |
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| CDS CCA 90 bp | CTTCCACTCACAAGTGGTCAGGCTGGTGGACATGGTCCTGTTGGCTaGTTCTGCCCCGGATATTGCGAGGTTTCTGCGATGTCTGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: LPLTSGQAGGHGPVG*FCPGYCEVSAMSVV Trigger: GACTACAGACATCGCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGTGAGTGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS CCA 90 bp | CCTTCTTCCACTCACAAGTGGTCAGGCTGGTGGACATGGTCCTGTTaGCTGGTTCTGCCCCGGATATTGCGAGGTTTCTGCGATGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: PSSTHKWSGWWTWSC*LVLPRILRGFCDVC Trigger: ACAGACATCGCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGTGAGTGGAAGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS GCA 72 bp | GGTGCAATCCGCTGTCTGGCCGGCTGGCTACGTGGATaGGGTACTGGCCACCATCCTCATCGTAACACTGCT | + |
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Preference number: 6 (lower is better) Translates to: GAIRCLAGWLRG*GTGHHPHRNTA Trigger: AGCAGTGTTACGATGAGGATGGTGGCCAGTACCGCATCCACGTAGCCAGCCGGCCAGACAGCGGATTGCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061030.10 ENSMUST00000231038.2 |
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| CDS GCA 72 bp | GGTCAGGCTGGTGGACATGGTCCTGTTGGCTGGTTCTaGCCCGGATATTGCGAGGTTTCTGCGATGTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GQAGGHGPVGWF*PGYCEVSAMSV Trigger: TACAGACATCGCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS CCA 72 bp | ACAAGTGGTCAGGCTGGTGGACATGGTCCTGTTGGCTaGTTCTGCCCCGGATATTGCGAGGTTTCTGCGATG | + |
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Preference number: 6 (lower is better) Translates to: TSGQAGGHGPVG*FCPGYCEVSAM Trigger: CATCGCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS CCA 72 bp | ACTCACAAGTGGTCAGGCTGGTGGACATGGTCCTGTTaGCTGGTTCTGCCCCGGATATTGCGAGGTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: THKWSGWWTWSC*LVLPRILRGFC Trigger: GCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGTGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS CAA 72 bp | CACTCACAAGTGGTCAGGCTGGTGGACATGGTCCTGTaGGCTGGTTCTGCCCCGGATATTGCGAGGTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: HSQVVRLVDMVL*AGSAPDIARFL Trigger: CAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGTGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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| CDS CAA 90 bp | ACCTTCTTCCACTCACAAGTGGTCAGGCTGGTGGACATGGTCCTGTaGGCTGGTTCTGCCCCGGATATTGCGAGGTTTCTGCGATGTCTG | + |
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Preference number: 6 (lower is better) Translates to: TFFHSQVVRLVDMVL*AGSAPDIARFLRCL Trigger: CAGACATCGCAGAAACCTCGCAATATCCGGGGCAGAACCAGCCAACAGGACCATGTCCACCAGCCTGACCACTTGTGAGTGGAAGAAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231038.2 |
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