RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RTP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033383

Ensembl transcript IDs: ENSMUST00000038730.7

Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACCTTGGGATCCACCCGAAGGACAAGATACCAGAAGCTTCAAGTCTaGGGAACACATGCACACTGCAGTGGAGCCAGCGACCCAGTGGCC +
Preference number: 1 (lower is better)
Translates to: TLGSTRRTRYQKLQV*GTHAHCSGASDPVA
Trigger: GGCCACTGGGTCGCTGGCTCCACTGCAGTGTGCATGTGTTCCCCAGACTTGAAGCTTCTGGTATCTTGTCCTTCGGGTGGATCCCAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 90 bp TGGTTACTAACTCAGACAGTGAACAATGGCCTCGAGAGCTCAGGGTaGGGAGCATCCTATTCCCGGCCCTTCACCTTTCCCCACCAGCCT +
Preference number: 1 (lower is better)
Translates to: WLLTQTVNNGLESSG*GASYSRPFTFPHQP
Trigger: AGGCTGGTGGGGAAAGGTGAAGGGCCGGGAATAGGATGCTCCCCACCCTGAGCTCTCGAGGCCATTGTTCACTGTCTGAGTTAGTAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 90 bp AAGTCACAGCTGGTTGCTACTGTCATGGTGACACTTGCCTTGTGCTaGTTTTCTTGGCCCAGCACAATGGCTAGACAGAGTCTCAGTAAG +
Preference number: 1 (lower is better)
Translates to: KSQLVATVMVTLALC*FSWPSTMARQSLSK
Trigger: CTTACTGAGACTCTGTCTAGCCATTGTGCTGGGCCAAGAAAATCAGCACAAGGCAAGTGTCACCATGACAGTAGCAACCAGCTGTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 90 bp TACCTTCAGGAGAAACTTCTGTGTGTGCCTGAGGCAGGCTCATATTaGAGGCAAAGAGGTTCTTTAAAGCTCCAGCTAGATGCTATGGTT +
Preference number: 1 (lower is better)
Translates to: YLQEKLLCVPEAGSY*RQRGSLKLQLDAMV
Trigger: AACCATAGCATCTAGCTGGAGCTTTAAAGAACCTCTTTGCCTTCAATATGAGCCTGCCTCAGGCACACACAGAAGTTTCTCCTGAAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR GCA 90 bp AGCCCTAGATTTCTGAGAAAGCCAGGGAGATTCATCAGAGGAGATTaGCAGGCATTGTTTATAAACTGGATGCAAATGAAGCTGCCCCTT +
Preference number: 1 (lower is better)
Translates to: SPRFLRKPGRFIRGD*QALFINWMQMKLPL
Trigger: AAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCTGATGAATCTCCCTGGCTTTCTCAGAAATCTAGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR GCA 90 bp CTGACTAAAGAAATTAATACTGCGAAGGAAGAAGTCACAGCTGGTTaGTACTGTCATGGTGACACTTGCCTTGTGCTGATTTTCTTGGCC +
Preference number: 1 (lower is better)
Translates to: LTKEINTAKEEVTAG*YCHGDTCLVLIFLA
Trigger: GGCCAAGAAAATCAGCACAAGGCAAGTGTCACCATGACAGTAGCAACCAGCTGTGACTTCTTCCTTCGCAGTATTAATTTCTTTAGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 90 bp CCCAAATCATACATTCCTGAGGTACCTAGAAGGACTTCGGAACCCTaGATTTCTTTTGAGAAATCAACCATCCAGCCCAGACACTTAATT +
Preference number: 1 (lower is better)
Translates to: PKSYIPEVPRRTSEP*ISFEKSTIQPRHLI
Trigger: AATTAAGTGTCTGGGCTGGATGGTTGATTTCTCAAAAGAAATCCAGGGTTCCGAAGTCCTTCTAGGTACCTCAGGAATGTATGATTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp AGCAGGGTAACACCCTTGTCACAACGGATCTCCATGGTGGGAAAGGAGAAGGAGACTTCTGTGTGTGCCTaGGGCAGGCTCATATTGAAG +
Preference number: 2 (lower is better)
Translates to: SRVTPLSQRISMVGKEKETSVCA*GRLILK
Trigger: CTTCAATATGAGCCTGCCTCAGGCACACACAGAAGT...CTCCTTCTCCTTTCCCACCATGGAGATCCGTTGTGACAAGGGTGTTACCCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR GCA 90 bp AGAGGAGATTGCCAGGCATTGTTTATAAACTGGATGCAAATGAAGCTGCCCCTTAGTCTGGGGAACACATaGACACTGCAGTGGAGCCAG +
Preference number: 2 (lower is better)
Translates to: RGDCQALFINWMQMKLPLSLGNT*TLQWSQ
Trigger: CTGGCTCCACTGCAGTGTGCATGTGTTCCCCAGACT...AAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp AATGAGCAGATGACTCTGACAGTCTCAACCTGGCTCAAGGTGCCTACTGTATGGCATCACATTAAAATGTaGCCCATTCCCAAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: NEQMTLTVSTWLKVPTVWHHIKM*PIPKPG
Trigger: ACCTGGCTTGGGAATGGGTCACATTTTAATGTGATG...CCATACAGTAGGCACCTTGAGCCAGGTTGAGACTGTCAGAGTCATCTGCTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR GCA 90 bp CAAACAGTACACAGAAGCAAAGATGAGGCTGGCGATAGCCTAGCTATTGATTCACAACCTGGCTCAAGGTaGCTACTGTATGGACCCAGA +
Preference number: 2 (lower is better)
Translates to: QTVHRSKDEAGDSLAIDSQPGSR*LLYGPR
Trigger: TCTGGGTCCATACAGTAGGCACCTTGAGCCAGGTTG...TGAATCAATAGCTAGGCTATCGCCAGCCTCATCTTTGCTTCTGTGTACTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp GTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCTGGCTGGAATTTACCAGAAGCTTCAAGTCTaGGGAACACATGCACACTGC +
Preference number: 2 (lower is better)
Translates to: VLNRGKRQSRETVLAGIYQKLQV*GTHAHC
Trigger: GCAGTGTGCATGTGTTCCCCAGACTTGAAGCTTCTG...GTAAATTCCAGCCAGCACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp ACAATCCAGGGAGACTGTGCTGGCTGGAATTTACATTCTAATCGGGAGTATCTCAACGGATCTCCATGGTaGGAAAGGAGAAGGAGGACT +
Preference number: 2 (lower is better)
Translates to: TIQGDCAGWNLHSNREYLNGSPW*ERRRRT
Trigger: AGTCCTCCTTCTCCTTTCCCACCATGGAGATCCGTT...GAGATACTCCCGATTAGAATGTAAATTCCAGCCAGCACAGTCTCCCTGGATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp GTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCTGGCTGGAATTTACAAGTACCCTGAACCCTaGAAGCTCTCCACTATAACG +
Preference number: 2 (lower is better)
Translates to: VLNRGKRQSRETVLAGIYKYPEP*KLSTIT
Trigger: CGTTATAGTGGAGAGCTTTCAGGGTTCAGGGTACTT...GTAAATTCCAGCCAGCACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR GCA 90 bp ACAATCCAGGGAGACTGTGCTGGCTGGAATTTACATTCTAATCGGGAGTATCTCGAAGTCACAGCTGGTTaGTACTGTCATGGTGACACT +
Preference number: 2 (lower is better)
Translates to: TIQGDCAGWNLHSNREYLEVTAG*YCHGDT
Trigger: AGTGTCACCATGACAGTAGCAACCAGCTGTGACTTC...GAGATACTCCCGATTAGAATGTAAATTCCAGCCAGCACAGTCTCCCTGGATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CAA 90 bp AGGGTGTCTCCAATCCTGTGGCTGCAAACCGTAATGTACCCCATTTaGAAAGGATGTGAGCTTCTAGGCACTCTCTACCAACAAGTTATT +
Preference number: 2 (lower is better)
Translates to: RVSPILWLQTVMYPI*KGCELLGTLYQQVI
Trigger: AATAACTTGTTGGTAGAGAGTGCCTAGAAGCTCACATCCTTTCAAAATGGGGTACATTACGGTTTGCAGCCACAGGATTGGAGACACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CAA 90 bp CAGGCATTGTTTATAAACTGGATGCAAATGAAGCTGCCCCTTTCATaGACGTATTACACCAGGCAGCAGAGGTTTGCTCTAACTCGGATG +
Preference number: 2 (lower is better)
Translates to: QALFINWMQMKLPLS*TYYTRQQRFALTRM
Trigger: CATCCGAGTTAGAGCAAACCTCTGCTGCCTGGTGTAATACGTCAATGAAAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp CAAACCTCTCTAAATTATGCCACTTCACAAGCACTGAGTGTGAGGCCTCACCCTAAGCAACTCACTCATTaGCTACTTCCCAAATCATAC +
Preference number: 2 (lower is better)
Translates to: QTSLNYATSQALSVRPHPKQLTH*LLPKSY
Trigger: GTATGATTTGGGAAGTAGTCAATGAGTGAGTTGCTT...AGGGTGAGGCCTCACACTCAGTGCTTGTGAAGTGGCATAATTTAGAGAGGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp CAAACCTCTCTAAATTATGCCACTTCACAAGCACTGAGTGTGAGGCCTCACCCTAAAGTAGTTCTCTTCTaGTTACAGCAAGGGAAAAGG +
Preference number: 2 (lower is better)
Translates to: QTSLNYATSQALSVRPHPKVVLF*LQQGKR
Trigger: CCTTTTCCCTTGCTGTAATCAGAAGAGAACTACTTT...AGGGTGAGGCCTCACACTCAGTGCTTGTGAAGTGGCATAATTTAGAGAGGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp AATATTGCTTTAAAAGCTCCCAGGGTTCCTAACATAGAGCCAAGGCTGAGAAGCGAGGCAGGCTCATATTaGAGGCAAAGAGGTTCTTTA +
Preference number: 2 (lower is better)
Translates to: NIALKAPRVPNIEPRLRSEAGSY*RQRGSL
Trigger: TAAAGAACCTCTTTGCCTTCAATATGAGCCTGCCTC...GCTTCTCAGCCTTGGCTCTATGTTAGGAACCCTGGGAGCTTTTAAAGCAATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp CTGAGCTCTTGTTCTGTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCATTTTGAAAGGATGTaGGCTTCTAGGCACTCTCTA +
Preference number: 2 (lower is better)
Translates to: LSSCSVLNRGKRQSRETVHFERM*ASRHSL
Trigger: TAGAGAGTGCCTAGAAGCTCACATCCTTTCAAAATG...CACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCACAGAACAAGAGCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR TCA 90 bp CTGAGCTCTTGTTCTGTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCCCAGGATGTGTGGCTaGCTAAAGAAATTAATACTG +
Preference number: 2 (lower is better)
Translates to: LSSCSVLNRGKRQSRETVPRMCG*LKKLIL
Trigger: CAGTATTAATTTCTTTAGTCAGCCACACATCCTGGG...CACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCACAGAACAAGAGCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp CAAACCTCTCTAAATTATGCCACTTCACAAGCACTGAGTGTGAGGCCTCACCCTTATAAAAGTCCTACATaGAACACCATGGAAAGTAGT +
Preference number: 2 (lower is better)
Translates to: QTSLNYATSQALSVRPHPYKSPT*NTMESS
Trigger: ACTACTTTCCATGGTGTTCCATGTAGGACTTTTATA...AGGGTGAGGCCTCACACTCAGTGCTTGTGAAGTGGCATAATTTAGAGAGGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR GCA 90 bp TTAGGTGGTCCTATGAAAAGGGGACTATACATATTCTCACAAACAAACAGTACAAGAAACTTCTGTGTGTaGCTGAGGCAGGCTCATATT +
Preference number: 2 (lower is better)
Translates to: LGGPMKRGLYIFSQTNSTRNFCV*LRQAHI
Trigger: AATATGAGCCTGCCTCAGGCACACACAGAAGTTTCT...TGTACTGTTTGTTTGTGAGAATATGTATAGTCCCCTTTTCATAGGACCACCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR GCA 90 bp TTAGGTGGTCCTATGAAAAGGGGACTATACATATTCTCACAAACAAACAGTACAAATCCAGGGAGACTGTaGTGGCTGGAATTTACATTC +
Preference number: 2 (lower is better)
Translates to: LGGPMKRGLYIFSQTNSTNPGRL*WLEFTF
Trigger: GAATGTAAATTCCAGCCAGCACAGTCTCCCTGGATT...TGTACTGTTTGTTTGTGAGAATATGTATAGTCCCCTTTTCATAGGACCACCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp TTAGGTGGTCCTATGAAAAGGGGACTATACATATTCTCACAAACAAACAGTACATGTGGGGAATCTCAATaGTGCATTAATGACACCCTG +
Preference number: 2 (lower is better)
Translates to: LGGPMKRGLYIFSQTNSTCGESQ*CINDTL
Trigger: CAGGGTGTCATTAATGCACCATTGAGATTCCCCACA...TGTACTGTTTGTTTGTGAGAATATGTATAGTCCCCTTTTCATAGGACCACCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp ACTAAAGAAATTAATACTGCGAAGGAAGAAGTCACAGCTGGTTGCTACTGTCATAGTCATTATTCTATGTaGTTTCCTCCCAAACCTCTC +
Preference number: 2 (lower is better)
Translates to: TKEINTAKEEVTAGCYCHSHYSM*FPPKPL
Trigger: GAGAGGTTTGGGAGGAAACCACATAGAATAATGACT...ATGACAGTAGCAACCAGCTGTGACTTCTTCCTTCGCAGTATTAATTTCTTTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CCA 90 bp TTAGGTGGTCCTATGAAAAGGGGACTATACATATTCTCACAAACAAACAGTACAAGGACTTCGGAACCCTaGATTTCTTTTGAGAAATCA +
Preference number: 2 (lower is better)
Translates to: LGGPMKRGLYIFSQTNSTRTSEP*ISFEKS
Trigger: TGATTTCTCAAAAGAAATCCAGGGTTCCGAAGTCCT...TGTACTGTTTGTTTGTGAGAATATGTATAGTCCCCTTTTCATAGGACCACCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp CAATGGCCTCGAGAGCTCAGGGTGGGGAGCATCCTATTCCCGGCCCTTCACCTTGGGAAAAGGCAGAAGTaGAGGGTGGGGGCCGATATT +
Preference number: 3 (lower is better)
Translates to: QWPRELRVGSILFPALHLGKRQK*RVGADI
Trigger: AATATCGGCCCCCACCCTCAACTTCTGCCTTTTCCC...AAGGTGAAGGGCCGGGAATAGGATGCTCCCCACCCTGAGCTCTCGAGGCCATTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp GAAGCTTCAAGTCTGGGGAACACATGCACACTGCAGTaGAGCCAGCGACCCAGTGGCCCTACCTCTTTACCT +
Preference number: 3 (lower is better)
Translates to: EASSLGNTCTLQ*SQRPSGPTSLP
Trigger: AGGTAAAGAGGTAGGGCCACTGGGTCGCTGGCTCCACTGCAGTGTGCATGTGTTCCCCAGACTTGAAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp AAAGGAGAAGGAGGACTGTACTCCCAGGTAACGGGATaGGAGGGAAGGCAACTGAGGAGGGAAAGTGAGCCC +
Preference number: 3 (lower is better)
Translates to: KGEGGLYSQVTG*EGRQLRRESEP
Trigger: GGGCTCACTTTCCCTCCTCAGTTGCCTTCCCTCTCATCCCGTTACCTGGGAGTACAGTCCTCCTTCTCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp TCCACCCGAAGGACAAGATACCAGAAGCTTCAAGTCTaGGGAACACATGCACACTGCAGTGGAGCCAGCGAC +
Preference number: 3 (lower is better)
Translates to: STRRTRYQKLQV*GTHAHCSGASD
Trigger: GTCGCTGGCTCCACTGCAGTGTGCATGTGTTCCCCAGACTTGAAGCTTCTGGTATCTTGTCCTTCGGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp GAACACATGCACACTGCAGTGGAGCCAGCGACCCAGTaGCCCTACCTCTTTACCTTCAGGAGAAACTTCTGT +
Preference number: 3 (lower is better)
Translates to: EHMHTAVEPATQ*PYLFTFRRNFC
Trigger: ACAGAAGTTTCTCCTGAAGGTAAAGAGGTAGGGCCACTGGGTCGCTGGCTCCACTGCAGTGTGCATGTGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp ACTAACTCAGACAGTGAACAATGGCCTCGAGAGCTCAGGGTGGGGAGCATCCTATCAACTGCCACCCCTTaGTCAAGCAGACAGACCTTG +
Preference number: 3 (lower is better)
Translates to: TNSDSEQWPRELRVGSILSTATP*SSRQTL
Trigger: CAAGGTCTGTCTGCTTGACAAAGGGGTGGCAGTTGA...TAGGATGCTCCCCACCCTGAGCTCTCGAGGCCATTGTTCACTGTCTGAGTTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp GACAGGAAGTTGGTTACTAACTCAGACAGTGAACAATaGCCTCGAGAGCTCAGGGTGGGGAGCATCCTATTC +
Preference number: 3 (lower is better)
Translates to: DRKLVTNSDSEQ*PRELRVGSILF
Trigger: GAATAGGATGCTCCCCACCCTGAGCTCTCGAGGCCATTGTTCACTGTCTGAGTTAGTAACCAACTTCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp CTGGTTGCTACTGTCATGGTGACACTTGCCTTGTGCTaGTTTTCTTGGCCCAGCACAATGGCTAGACAGAGT +
Preference number: 3 (lower is better)
Translates to: LVATVMVTLALC*FSWPSTMARQS
Trigger: ACTCTGTCTAGCCATTGTGCTGGGCCAAGAAAATCAGCACAAGGCAAGTGTCACCATGACAGTAGCAACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp GAAGGAAGAAGTCACAGCTGGTTGCTACTGTCATGGTaGCACTTGCCTTGTGCTGATTTTCTTGGCCCAGCA +
Preference number: 3 (lower is better)
Translates to: EGRSHSWLLLSW*HLPCADFLGPA
Trigger: TGCTGGGCCAAGAAAATCAGCACAAGGCAAGTGTCACCATGACAGTAGCAACCAGCTGTGACTTCTTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR GCA 72 bp CCCTACCTCTTTACCTTCAGGAGAAACTTCTGTGTGTaGCTGAGGCAGGCTCATATTGAAGGCAAAGAGGTT +
Preference number: 3 (lower is better)
Translates to: PYLFTFRRNFCV*LRQAHIEGKEV
Trigger: AACCTCTTTGCCTTCAATATGAGCCTGCCTCAGGCACACACAGAAGTTTCTCCTGAAGGTAAAGAGGTAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp GTGACTTTCTATAGACCTGGCTGGAGGACAGGAAGTTaGTTACTAACTCAGACAGTGAACAATGGCCTCGAG +
Preference number: 3 (lower is better)
Translates to: VTFYRPGWRTGS*LLTQTVNNGLE
Trigger: CTCGAGGCCATTGTTCACTGTCTGAGTTAGTAACCAACTTCCTGTCCTCCAGCCAGGTCTATAGAAAGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp CTGTTCCCCTATTCGAGACACAAGTACCCTGAACCCTaGAAGCTCTCCACTATAACGGGGAGTCATTATTCT +
Preference number: 3 (lower is better)
Translates to: LFPYSRHKYPEP*KLSTITGSHYS
Trigger: AGAATAATGACTCCCCGTTATAGTGGAGAGCTTTCAGGGTTCAGGGTACTTGTGTCTCGAATAGGGGAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp CTAGACAGAGTCTCAGTAAGAAAGAAGACAGGATACTaGGAGGGGACACTAATGGCCCAATGGACATCAAGG +
Preference number: 3 (lower is better)
Translates to: LDRVSVRKKTGY*EGTLMAQWTSR
Trigger: CCTTGATGTCCATTGGGCCATTAGTGTCCCCTCTCAGTATCCTGTCTTCTTTCTTACTGAGACTCTGTCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp GCCTTACTCTCTGTTATCAGGGTGTCTCCAATCCTGTaGCTGCAAACCGTAATGTACCCCATTTTGAAAGGA +
Preference number: 3 (lower is better)
Translates to: ALLSVIRVSPIL*LQTVMYPILKG
Trigger: TCCTTTCAAAATGGGGTACATTACGGTTTGCAGCCACAGGATTGGAGACACCCTGATAACAGAGAGTAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp CACACTACAGGCATTGTGACTTTCTATAGACCTGGCTaGAGGACAGGAAGTTGGTTACTAACTCAGACAGTG +
Preference number: 3 (lower is better)
Translates to: HTTGIVTFYRPG*RTGSWLLTQTV
Trigger: CACTGTCTGAGTTAGTAACCAACTTCCTGTCCTCCAGCCAGGTCTATAGAAAGTCACAATGCCTGTAGTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp CACTTGCCTTGTGCTGATTTTCTTGGCCCAGCACAATaGCTAGACAGAGTCTCAGTAAGAAAGAAGACAGGA +
Preference number: 3 (lower is better)
Translates to: HLPCADFLGPAQ*LDRVSVRKKTG
Trigger: TCCTGTCTTCTTTCTTACTGAGACTCTGTCTAGCCATTGTGCTGGGCCAAGAAAATCAGCACAAGGCAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp CAAACAGTACACAGAAGCAAAGATGAGGCTGGCGATAGCCTAGCTATTGATTCACTGGAGGACAGGAAGTaGGTTACTAACTCAGACAGT +
Preference number: 3 (lower is better)
Translates to: QTVHRSKDEAGDSLAIDSLEDRK*VTNSDS
Trigger: ACTGTCTGAGTTAGTAACCAACTTCCTGTCCTCCAG...TGAATCAATAGCTAGGCTATCGCCAGCCTCATCTTTGCTTCTGTGTACTGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp GTCCTACATGGAACACCATGGAAAGTAGTTCTCTTCTaGTTACAGCAAGGGAAAAGGCAGAAGTTGAGGGTG +
Preference number: 3 (lower is better)
Translates to: VLHGTPWKVVLF*LQQGKRQKLRV
Trigger: CACCCTCAACTTCTGCCTTTTCCCTTGCTGTAATCAGAAGAGAACTACTTTCCATGGTGTTCCATGTAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp GAGAAACTTCTGTGTGTGCCTGAGGCAGGCTCATATTaGAGGCAAAGAGGTTCTTTAAAGCTCCAGCTAGAT +
Preference number: 3 (lower is better)
Translates to: EKLLCVPEAGSY*RQRGSLKLQLD
Trigger: ATCTAGCTGGAGCTTTAAAGAACCTCTTTGCCTTCAATATGAGCCTGCCTCAGGCACACACAGAAGTTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp ACCTCTTTACCTTCAGGAGAAACTTCTGTGTGTGCCTaGGGCAGGCTCATATTGAAGGCAAAGAGGTTCTTT +
Preference number: 3 (lower is better)
Translates to: TSLPSGETSVCA*GRLILKAKRFF
Trigger: AAAGAACCTCTTTGCCTTCAATATGAGCCTGCCTCAGGCACACACAGAAGTTTCTCCTGAAGGTAAAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp TACATTCCTGAGGTACCTAGAAGGACTTCGGAACCCTaGATTTCTTTTGAGAAATCAACCATCCAGCCCAGA +
Preference number: 3 (lower is better)
Translates to: YIPEVPRRTSEP*ISFEKSTIQPR
Trigger: TCTGGGCTGGATGGTTGATTTCTCAAAAGAAATCCAGGGTTCCGAAGTCCTTCTAGGTACCTCAGGAATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp ACAATCCAGGGAGACTGTGCTGGCTGGAATTTACATTCTAATCGGGAGTATCTCAACCCTGGATTTCTTTaGAGAAATCAACCATCCAGC +
Preference number: 3 (lower is better)
Translates to: TIQGDCAGWNLHSNREYLNPGFL*RNQPSS
Trigger: GCTGGATGGTTGATTTCTCAAAAGAAATCCAGGGTT...GAGATACTCCCGATTAGAATGTAAATTCCAGCCAGCACAGTCTCCCTGGATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp GGCCGATATTGGGTTAGGAGAAAGCAACTCACTCATTaGCTACTTCCCAAATCATACATTCCTGAGGTACCT +
Preference number: 3 (lower is better)
Translates to: GRYWVRRKQLTH*LLPKSYIPEVP
Trigger: AGGTACCTCAGGAATGTATGATTTGGGAAGTAGTCAATGAGTGAGTTGCTTTCTCCTAACCCAATATCGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR GCA 72 bp GAAATTAATACTGCGAAGGAAGAAGTCACAGCTGGTTaGTACTGTCATGGTGACACTTGCCTTGTGCTGATT +
Preference number: 3 (lower is better)
Translates to: EINTAKEEVTAG*YCHGDTCLVLI
Trigger: AATCAGCACAAGGCAAGTGTCACCATGACAGTAGCAACCAGCTGTGACTTCTTCCTTCGCAGTATTAATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp AATATTGCTTTAAAAGCTCCCAGGGTTCCTAACATAGAGCCAAGGCTGAGAAGCGTAATGTACCCCATTTaGAAAGGATGTGAGCTTCTA +
Preference number: 3 (lower is better)
Translates to: NIALKAPRVPNIEPRLRSVMYPI*KGCELL
Trigger: TAGAAGCTCACATCCTTTCAAAATGGGGTACATTAC...GCTTCTCAGCCTTGGCTCTATGTTAGGAACCCTGGGAGCTTTTAAAGCAATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR GCA 72 bp TTTCTGAGAAAGCCAGGGAGATTCATCAGAGGAGATTaGCAGGCATTGTTTATAAACTGGATGCAAATGAAG +
Preference number: 3 (lower is better)
Translates to: FLRKPGRFIRGD*QALFINWMQMK
Trigger: CTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCTGATGAATCTCCCTGGCTTTCTCAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CCA 72 bp TTCATCAGAGGAGATTGCCAGGCATTGTTTATAAACTaGATGCAAATGAAGCTGCCCCTTTCATTGACGTAT +
Preference number: 3 (lower is better)
Translates to: FIRGDCQALFIN*MQMKLPLSLTY
Trigger: ATACGTCAATGAAAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCTGATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR-3UTR CAA 90 bp AGAGGAGATTGCCAGGCATTGTTTATAAACTGGATGCAAATGAAGCTGCCCCTTAAAGCAACTCACTCATaGACTACTTCCCAAATCATA +
Preference number: 3 (lower is better)
Translates to: RGDCQALFINWMQMKLPLKATHS*TTSQII
Trigger: TATGATTTGGGAAGTAGTCAATGAGTGAGTTGCTTT...AAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR TCA 72 bp GCTATTGATTCACTTAGTCGTTCAACAAAATCTTCCTaGGCTCTTGTTCTGTGCTCAATAGAGGTAAAAGAC +
Preference number: 3 (lower is better)
Translates to: AIDSLSRSTKSS*ALVLCSIEVKD
Trigger: GTCTTTTACCTCTATTGAGCACAGAACAAGAGCTCAGGAAGATTTTGTTGAACGACTAAGTGAATCAATAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CAA 72 bp GCCTCACCCTGTGACTCTACCTCAACTGCCACCCCTTaGTCAAGCAGACAGACCTTGGGATCCACCCGAAGG +
Preference number: 4 (lower is better)
Translates to: ASPCDSTSTATP*SSRQTLGSTRR
Trigger: CCTTCGGGTGGATCCCAAGGTCTGTCTGCTTGACAAAGGGGTGGCAGTTGAGGTAGAGTCACAGGGTGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CCA 90 bp AATATTGCTTTAAAAGCTCCCAGGGTTCCTAACATAGAGCCAAGGCTGAGAAGCCAGCCTGCGGTTTGGTaGGGCTGGGAGCACGGGAGA +
Preference number: 4 (lower is better)
Translates to: NIALKAPRVPNIEPRLRSQPAVW*GWEHGR
Trigger: TCTCCCGTGCTCCCAGCCCCACCAAACCGCAGGCTG...GCTTCTCAGCCTTGGCTCTATGTTAGGAACCCTGGGAGCTTTTAAAGCAATATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CCA 90 bp AGAAACTTCTGTGTGTGCCTGAGGCAGGCTCATATTGAAGGCAAAGAGGTTCTTTTTCAGCCTGCGGTTTaGTGGGGCTGGGAGCACGGG +
Preference number: 4 (lower is better)
Translates to: RNFCVCLRQAHIEGKEVLFQPAV*WGWEHG
Trigger: CCCGTGCTCCCAGCCCCACCAAACCGCAGGCTGAAA...AAGAACCTCTTTGCCTTCAATATGAGCCTGCCTCAGGCACACACAGAAGTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR TCA 90 bp GTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCTGGCTGGAATTTACACCGAACCAGCGCGCTaGGCCTTGTCCAGGTACATG +
Preference number: 4 (lower is better)
Translates to: VLNRGKRQSRETVLAGIYTEPAR*ALSRYM
Trigger: CATGTACCTGGACAAGGCTCAGCGCGCTGGTTCGGT...GTAAATTCCAGCCAGCACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR GCA 90 bp GTGCTCAATAGAGGTAAAAGACAATCCAGGGAGACTGTGCTGGCTGGAATTTACGAGCCTGTTTCAGCCTaGGGTTTGGTGGGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: VLNRGKRQSRETVLAGIYEPVSA*GLVGLG
Trigger: TCCCAGCCCCACCAAACCGCAGGCTGAAACAGGCTC...GTAAATTCCAGCCAGCACAGTCTCCCTGGATTGTCTTTTACCTCTATTGAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR TCA 90 bp AATATTGCTTTAAAAGCTCCCAGGGTTCCTAACATAGAGCCAAGGCTGAGAAGCGCAGAAGTTGCAGCCTaGGCCTGTTTCAGCCTGCGG +
Preference number: 4 (lower is better)
Translates to: NIALKAPRVPNIEPRLRSAEVAA*ACFSLR
Trigger: CCGCAGGCTGAAACAGGCTCAGGCTGCAACTTCTGC...GCTTCTCAGCCTTGGCTCTATGTTAGGAACCCTGGGAGCTTTTAAAGCAATATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CCA 90 bp ACTAAAGAAATTAATACTGCGAAGGAAGAAGTCACAGCTGGTTGCTACTGTCATTGCACGATGCCTTCCTaGCAGGCCTCGCAGAACTCT +
Preference number: 4 (lower is better)
Translates to: TKEINTAKEEVTAGCYCHCTMPS*QASQNS
Trigger: AGAGTTCTGCGAGGCCTGCCAGGAAGGCATCGTGCA...ATGACAGTAGCAACCAGCTGTGACTTCTTCCTTCGCAGTATTAATTTCTTTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CCA 90 bp AAGAAAGAAGACAGGATACTGAGAGGGGACACTAATGGCCCAATGGACATCAAGTCTTCCACTCACCTGTaGTCACACTCTTACACATGT +
Preference number: 4 (lower is better)
Translates to: KKEDRILRGDTNGPMDIKSSTHL*SHSYTC
Trigger: ACATGTGTAAGAGTGTGACCACAGGTGAGTGGAAGA...CTTGATGTCCATTGGGCCATTAGTGTCCCCTCTCAGTATCCTGTCTTCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CAA 72 bp AAGCCAGGGAGATTCATCAGAGGAGATTGCCAGGCATaGTTTATAAACTGGATGCAAATGAAGCTGCCCCTT +
Preference number: 4 (lower is better)
Translates to: KPGRFIRGDCQA*FINWMQMKLPL
Trigger: AAGGGGCAGCTTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCTGATGAATCTCCCTGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CCA 90 bp ACTAAAGAAATTAATACTGCGAAGGAAGAAGTCACAGCTGGTTGCTACTGTCATATAAGCACCAGGGAATaGAGCAGAAGTTGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: TKEINTAKEEVTAGCYCHISTRE*SRSCSL
Trigger: CAGGCTGCAACTTCTGCTCCATTCCCTGGTGCTTAT...ATGACAGTAGCAACCAGCTGTGACTTCTTCCTTCGCAGTATTAATTTCTTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR GCA 90 bp AAAATACCAAGAGAGCAAAGTCAAGTAAGTTCCTTGGCTTTAAGATCTTTAGAGGAATGGAGCAGAAGTTaGAGCCTGAGCCTGTTTCAG +
Preference number: 4 (lower is better)
Translates to: KIPREQSQVSSLALRSLEEWSRS*SLSLFQ
Trigger: CTGAAACAGGCTCAGGCTGCAACTTCTGCTCCATTC...CTCTAAAGATCTTAAAGCCAAGGAACTTACTTGACTTTGCTCTCTTGGTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
3UTR CAA 72 bp ATTTCTGAGAAAGCCAGGGAGATTCATCAGAGGAGATaGCCAGGCATTGTTTATAAACTGGATGCAAATGAA +
Preference number: 4 (lower is better)
Translates to: ISEKAREIHQRR*PGIVYKLDANE
Trigger: TTCATTTGCATCCAGTTTATAAACAATGCCTGGCAATCTCCTCTGATGAATCTCCCTGGCTTTCTCAGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CAA 90 bp TTCTATAGACCTGGCTGGAGGACAGGAAGTTGGTTACTAACTCAGACAGTGAACCCGCGGTGTCGCCGGTaGTCCTGCCGGCTGGCCACA +
Preference number: 5 (lower is better)
Translates to: FYRPGWRTGSWLLTQTVNPRCRR*SCRLAT
Trigger: TGTGGCCAGCCGGCAGGACAACCGGCGACACCGCGG...GTTCACTGTCTGAGTTAGTAACCAACTTCCTGTCCTCCAGCCAGGTCTATAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CAA 90 bp CAAACAGTACACAGAAGCAAAGATGAGGCTGGCGATAGCCTAGCTATTGATTCAGTTTCAGCCTGCGGTTaGGTGGGGCTGGGAGCACGG +
Preference number: 5 (lower is better)
Translates to: QTVHRSKDEAGDSLAIDSVSACG*VGLGAR
Trigger: CCGTGCTCCCAGCCCCACCAAACCGCAGGCTGAAAC...TGAATCAATAGCTAGGCTATCGCCAGCCTCATCTTTGCTTCTGTGTACTGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7
CDS-3UTR CAA 90 bp AATGAGCAGATGACTCTGACAGTCTCAACCTGGCTCAAGGTGCCTACTGTATGGGGAATGGAGCAGAAGTaGCAGCCTGAGCCTGTTTCA +
Preference number: 5 (lower is better)
Translates to: NEQMTLTVSTWLKVPTVWGMEQK*QPEPVS
Trigger: TGAAACAGGCTCAGGCTGCAACTTCTGCTCCATTCC...CCATACAGTAGGCACCTTGAGCCAGGTTGAGACTGTCAGAGTCATCTGCTCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038730.7