Pregenerated sensors for RTN4RL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050896

Ensembl transcript IDs: ENSMUST00000054514.6, ENSMUST00000151799.8

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGAAGAGCTGTTGCCGCGGGCGCGGCTGCCCGGCCGCGTGGGCGTaGGCGGCGGGCACGCTTGGAAATCGGAGTCGCGCAGCGCGCGCA	+
Preference number: 5 (lower is better) Translates to: WKSCCRGRGCPAAWA*AAGTLGNRSRAARA Trigger: TGCGCGCGCTGCGCGACTCCGATTTCCAAGCGTGCCCGCCGCCCACGCCCACGCGGCCGGGCAGCCGCGCCCGCGGCAACAGCTCTTCCA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 90 bp	CCACGCCGTACAGGTGGTTGGAAGAGCTGTTGCCGCGGGCGCGGCTaGCCGGCCGCGTGGGCGTGGGCGGCGGGCACGCTTGGAAATCGG	+
Preference number: 5 (lower is better) Translates to: PRRTGGWKSCCRGRG*PAAWAWAAGTLGNR Trigger: CCGATTTCCAAGCGTGCCCGCCGCCCACGCCCACGCGGCCGGGCAGCCGCGCCCGCGGCAACAGCTCTTCCAACCACCTGTACGGCGTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 90 bp	CACGCTTGGAAATCGGAGTCGCGCAGCGCGCGCAGGTCCCGGCCCTaGCGCTCGGGCGGGGTGGCGCAGGTCACGTCGGAGCTGGACACC	+
Preference number: 5 (lower is better) Translates to: HAWKSESRSARRSRP*RSGGVAQVTSELDT Trigger: GGTGTCCAGCTCCGACGTGACCTGCGCCACCCCGCCCGAGCGCCAGGGCCGGGACCTGCGCGCGCTGCGCGACTCCGATTTCCAAGCGTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 90 bp	TTGCCAGGCAGGCTGCTGAGCTGGCAACGATACAGGTGTAGTGACTaGAGCCTCTCCAGACCCTGGAAGGTGTCGGGCTCCAGGGAGCGC	+
Preference number: 5 (lower is better) Translates to: LPGRLLSWQRYRCSD*SLSRPWKVSGSRER Trigger: GCGCTCCCTGGAGCCCGACACCTTCCAGGGTCTGGAGAGGCTGCAGTCACTACACCTGTATCGTTGCCAGCTCAGCAGCCTGCCTGGCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 90 bp	ACGTGCTCCGTGAGCAGCCGCAGGCGGTTCCCGTGGAGGAAGAGGTaGCTCAGGTTGGCCAGGTCCGCGAACAAGTCATCCTGTAGATGG	+
Preference number: 5 (lower is better) Translates to: TCSVSSRRRFPWRKR*LRLARSANKSSCRW Trigger: CCATCTACAGGATGACTTGTTCGCGGACCTGGCCAACCTGAGCCACCTCTTCCTCCACGGGAACCGCCTGCGGCTGCTCACGGAGCACGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 90 bp	TCTGTGTACTGGGTGGCAAGGACAGCGGCACTGAGGAGAAGTTGTTaGCCTGGCAGCTCACGGTGGGCGGGGAGGAGTAGCAGGTGCAGA	+
Preference number: 5 (lower is better) Translates to: SVYWVARTAALRRSC*PGSSRWAGRSSRCR Trigger: TCTGCACCTGCTACTCCTCCCCGCCCACCGTGAGCTGCCAGGCCAACAACTTCTCCTCAGTGCCGCTGTCCTTGCCACCCAGTACACAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS TCA 90 bp	CTGCAAGAAGAGTCTCTGTGTACTGGGTGGCAAGGACAGCGGCACTaGGGAGAAGTTGTTGGCCTGGCAGCTCACGGTGGGCGGGGAGGA	+
Preference number: 5 (lower is better) Translates to: LQEESLCTGWQGQRH*GEVVGLAAHGGRGG Trigger: TCCTCCCCGCCCACCGTGAGCTGCCAGGCCAACAACTTCTCCTCAGTGCCGCTGTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 90 bp	TTGGGCCCAAAGGTGCCTGGCCGCAGTGAGCGGATGAGGTTGTTCTaGAAGAAGAGTCTCTGTGTACTGGGTGGCAAGGACAGCGGCACT	+
Preference number: 5 (lower is better) Translates to: LGPKVPGRSERMRLF*KKSLCVLGGKDSGT Trigger: AGTGCCGCTGTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCCCAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 72 bp	ACAGGTGGTTGGAAGAGCTGTTGCCGCGGGCGCGGCTaGCCGGCCGCGTGGGCGTGGGCGGCGGGCACGCTT	+
Preference number: 6 (lower is better) Translates to: TGGWKSCCRGRG*PAAWAWAAGTL Trigger: AAGCGTGCCCGCCGCCCACGCCCACGCGGCCGGGCAGCCGCGCCCGCGGCAACAGCTCTTCCAACCACCTGT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 72 bp	GGCGCTCGGGCGGGGTGGCGCAGGTCACGTCGGAGCTaGACACCCGCGCGCGCTGGAACCAAGCCCAGAGCG	+
Preference number: 6 (lower is better) Translates to: GARAGWRRSRRS*TPARAGTKPRA Trigger: CGCTCTGGGCTTGGTTCCAGCGCGCGCGGGTGTCCAGCTCCGACGTGACCTGCGCCACCCCGCCCGAGCGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 72 bp	GCGCAGGTCACGTCGGAGCTGGACACCCGCGCGCGCTaGAACCAAGCCCAGAGCGGCCGAGCGCGGCAGTCG	+
Preference number: 6 (lower is better) Translates to: AQVTSELDTRAR*NQAQSGRARQS Trigger: CGACTGCCGCGCTCGGCCGCTCTGGGCTTGGTTCCAGCGCGCGCGGGTGTCCAGCTCCGACGTGACCTGCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CAA 72 bp	CAGAGCGGCCGAGCGCGGCAGTCGCACGCCCAGGGGTaGGCGTTGAGCCGCAGGAACTCGAGCGCCGGCAGG	+
Preference number: 6 (lower is better) Translates to: QSGRARQSHAQG*ALSRRNSSAGR Trigger: CCTGCCGGCGCTCGAGTTCCTGCGGCTCAACGCCAACCCCTGGGCGTGCGACTGCCGCGCTCGGCCGCTCTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 72 bp	CGGCTGAGGCCGTGGAAAGCCGCGCGGTGCACGCCCTaGAGCCGGTTCCCGTGCAGCAACAGCCGGTCCAGG	+
Preference number: 6 (lower is better) Translates to: RLRPWKAARCTP*SRFPCSNSRSR Trigger: CCTGGACCGGCTGTTGCTGCACGGGAACCGGCTGCAGGGCGTGCACCGCGCGGCTTTCCACGGCCTCAGCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 72 bp	ATGGTGAGGCGGCTGAGGCCGTGGAAAGCCGCGCGGTaGACGCCCTGCAGCCGGTTCCCGTGCAGCAACAGC	+
Preference number: 6 (lower is better) Translates to: MVRRLRPWKAAR*TPCSRFPCSNS Trigger: GCTGTTGCTGCACGGGAACCGGCTGCAGGGCGTGCACCGCGCGGCTTTCCACGGCCTCAGCCGCCTCACCAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS TCA 72 bp	GGTCCAGGCTGCCCAAGCCGCGGAACACGTGCTCCGTaGGCAGCCGCAGGCGGTTCCCGTGGAGGAAGAGGT	+
Preference number: 6 (lower is better) Translates to: GPGCPSRGTRAP*AAAGGSRGGRG Trigger: ACCTCTTCCTCCACGGGAACCGCCTGCGGCTGCTCACGGAGCACGTGTTCCGCGGCTTGGGCAGCCTGGACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 72 bp	AGGAGTGTCAGCAGTAGGCAGGCTGAGGCAGGACCTTaGAGCAGGCGCCGGAGCCCGGGCAGCATCTTGTCT	+
Preference number: 6 (lower is better) Translates to: RSVSSRQAEAGP*SRRRSPGSILS Trigger: AGACAAGATGCTGCCCGGGCTCCGGCGCCTGCTGCAAGGTCCTGCCTCAGCCTGCCTACTGCTGACACTCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151799.8
CDS CAA 72 bp	GGCCCAAAGGTGCCTGGCCGCAGTGAGCGGATGAGGTaGTTCTGCAAGAAGAGTCTCTGTGTACTGGGTGGC	+
Preference number: 6 (lower is better) Translates to: GPKVPGRSERMR*FCKKSLCVLGG Trigger: GCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CAA 90 bp	AGCAGGTTGGGCCCAAAGGTGCCTGGCCGCAGTGAGCGGATGAGGTaGTTCTGCAAGAAGAGTCTCTGTGTACTGGGTGGCAAGGACAGC	+
Preference number: 6 (lower is better) Translates to: SRLGPKVPGRSERMR*FCKKSLCVLGGKDS Trigger: GCTGTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCCCAACCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS TCA 72 bp	GGTTGGGCCCAAAGGTGCCTGGCCGCAGTGAGCGGATaGGGTTGTTCTGCAAGAAGAGTCTCTGTGTACTGG	+
Preference number: 6 (lower is better) Translates to: GWAQRCLAAVSG*GCSARRVSVYW Trigger: CCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCCCAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS GCA 72 bp	AAGGTGCCTGGCCGCAGTGAGCGGATGAGGTTGTTCTaGAAGAAGAGTCTCTGTGTACTGGGTGGCAAGGAC	+
Preference number: 6 (lower is better) Translates to: KVPGRSERMRLF*KKSLCVLGGKD Trigger: GTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8
CDS CCA 72 bp	AAGCCTCGGAAAATGTTGCCAGGCAGGCTGCTGAGCTaGCAACGATACAGGTGTAGTGACTGCAGCCTCTCC	+
Preference number: 6 (lower is better) Translates to: KPRKMLPGRLLS*QRYRCSDCSLS Trigger: GGAGAGGCTGCAGTCACTACACCTGTATCGTTGCCAGCTCAGCAGCCTGCCTGGCAACATTTTCCGAGGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054514.6 ENSMUST00000151799.8

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