Pregenerated sensors for RTN4IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019864Ensembl transcript IDs: ENSMUST00000054418.12, ENSMUST00000105492.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAGGCCTGCCTACAGGCGATCAAGACATAGAAGCAGGAAAGCCCTaGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCCACTTCCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: SGLPTGDQDIEAGKP*VLVSPPAVPPHFLP Trigger: TGGGAGGAAGTGGGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTCTTGATCGCCTGTAGGCAGGCCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR GCA 90 bp | CTCCCGAAGGTTCCCTGTGATGTCCTCTCGTGCCCTTGGCGCATGTaGCCACACAAGCATTATGCATTTCTTTATCTCTGTAGAGGTGTG | + |
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Preference number: 1 (lower is better) Translates to: LPKVPCDVLSCPWRM*PHKHYAFLYLCRGV Trigger: CACACCTCTACAGAGATAAAGAAATGCATAATGCTTGTGTGGGCACATGCGCCAAGGGCACGAGAGGACATCACAGGGAACCTTCGGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR GCA 90 bp | ATTACATCTCACAGATTACATCATAGAGGGCAGGGACTCAAGGAATaGAGGAACCCGGAGGCAGGAACTAATGCAGAGGCCACAGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: ITSHRLHHRGQGLKE*RNPEAGTNAEATEE Trigger: CTCCTCTGTGGCCTCTGCATTAGTTCCTGCCTCCGGGTTCCTGCATTCCTTGAGTCCCTGCCCTCTATGATGTAATCTGTGAGATGTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | GGAACCCGGAGGCAGGAACTAATGCAGAGGCCACAGAGGAGTGCTGCTGACTGGTATCTCCTCCAGCAGTaGCTCCCCACTTCCTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: GTRRQELMQRPQRSAADWYLLQQ*LPTSSH Trigger: GTGGGAGGAAGTGGGGAGGCACTGCTGGAGGAGATA...CCAGTCAGCAGCACTCCTCTGTGGCCTCTGCATTAGTTCCTGCCTCCGGGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | TCTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGTGGGCTCCAGGAACTaGACTCAGGCAGCCACGCAA | + |
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Preference number: 2 (lower is better) Translates to: SYTPHDYLPRDGTSHSGLVGSRN*TQAATQ Trigger: TTGCGTGGCTGCCTGAGTTCAGTTCCTGGAGCCCAC...CAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | ATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCGTACTTCCCACTGACTaGAGGCAAGTGCAGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: IHPMTTYPGMAPPTVGWTVLPTD*RQVQEL Trigger: CAGCTCCTGCACTTGCCTGCAGTCAGTGGGAAGTAC...GGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CCA 90 bp | GGCGATCAAGACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTCCTCTCGTGCCCTTaGCGCATGTGCCCACACAAG | + |
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Preference number: 2 (lower is better) Translates to: GDQDIEAGKPWVLVSPPAVLSCP*RMCPHK Trigger: CTTGTGTGGGCACATGCGCCAAGGGCACGAGAGGAC...TGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTCTTGATCGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGTACTTCCCACTGACTaGAGGCAAGTGCAGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SYTPHDYLPRDGTSHSGLVLPTD*RQVQEL Trigger: CAGCTCCTGCACTTGCCTGCAGTCAGTGGGAAGTAC...CAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGGATGGCACCTCCCACAGTGGGCTGGACCCATCCACCAACCATCAATCAAGGGCAAGTGCAGGAGCTaGCAGTTTTGTACTGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: QGWHLPQWAGPIHQPSIKGKCRS*QFCTEH Trigger: ATGCTCAGTACAAAACTGTCAGCTCCTGCACTTGCC...CTTGATTGATGGTTGGTGGATGGGTCCAGCCCACTGTGGGAGGTGCCATCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGAATGCTCCTCAGGCCTaGCTACAGGCGATCAAGACA | + |
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Preference number: 2 (lower is better) Translates to: SYTPHDYLPRDGTSHSGLNAPQA*LQAIKT Trigger: TGTCTTGATCGCCTGTAGGCAGGCCTGAGGAGCATT...CAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CCA 90 bp | CACAGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTTGGTTGTCCTCTCGTGCCCTTaGCGCATGTGCCCACACAAG | + |
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Preference number: 2 (lower is better) Translates to: HRGVLLTGLLPLSLLSLVVLSCP*RMCPHK Trigger: CTTGTGTGGGCACATGCGCCAAGGGCACGAGAGGAC...AACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | CTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGCCCAGGTACAAGACATaGCATATGGTGCACATACAC | + |
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Preference number: 2 (lower is better) Translates to: LIHPMTTYPGMAPPTVGWPRYKT*HMVHIH Trigger: GTGTATGTGCACCATATGGCATGTCTTGTACCTGGG...CCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | CACAGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTTGGTTCCATGTACTTCCCACTaGCTGCAGGCAAGTGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: HRGVLLTGLLPLSLLSLVPCTSH*LQASAG Trigger: TCCTGCACTTGCCTGCAGTCAGTGGGAAGTACATGG...AACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | GACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCAAAACAAAAACACTGTaGAGAGGCTGGAGACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: DIEAGKPWVLVSPPAVPPKTKTL*RGWRQL Trigger: GAGCTGTCTCCAGCCTCTGCACAGTGTTTTTGTTTT...GGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR CAA 90 bp | AGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTaGGTTTCTTATACACCCCATGACTACCTACCCAGGGATGGCACC | + |
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Preference number: 2 (lower is better) Translates to: RGVLLTGLLPLSLLS*VSYTPHDYLPRDGT Trigger: GGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAGAAACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTTGGTTAATGCTCCTCAGGCCTaGCTACAGGCGATCAAGACA | + |
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Preference number: 2 (lower is better) Translates to: HRGVLLTGLLPLSLLSLVNAPQA*LQAIKT Trigger: TGTCTTGATCGCCTGTAGGCAGGCCTGAGGAGCATT...AACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CCA 90 bp | CACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCCATAAAAATTTACAGAGCTaGGTCAAACCACAGCTTATG | + |
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Preference number: 2 (lower is better) Translates to: HPMTTYPGMAPPTVGWTHKNLQS*VKPQLM Trigger: CATAAGCTGTGGTTTGACCCAGCTCTGTAAATTTTT...ATGGGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | CTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACATGTAGACTGCCATaGAGAAACTATTCTCTAGGT | + |
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Preference number: 2 (lower is better) Translates to: LIHPMTTYPGMAPPTVGWTCRLP*RNYSLG Trigger: ACCTAGAGAATAGTTTCTTCATGGCAGTCTACATGT...CCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACAGCTCCGCATTTAGGACCATGTACTTCCCACTaGCTGCAGGCAAGTGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: AYENKNTVQRLETAPHLGPCTSH*LQASAG Trigger: TCCTGCACTTGCCTGCAGTCAGTGGGAAGTACATGG...TCCTAAATGCGGAGCTGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CCA 90 bp | CTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGAAAAATTTACAGAGCTaGGTCAAACCACAGCTTATG | + |
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Preference number: 2 (lower is better) Translates to: LIHPMTTYPGMAPPTVGWKNLQS*VKPQLM Trigger: CATAAGCTGTGGTTTGACCCAGCTCTGTAAATTTTT...CCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTACATCTCACAGATTACATCATAGAGGGCAGGGACTCAAGGAATGCAGGCTACCTACCCAGGGATaGCACCTCCCACAGTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: FITSHRLHHRGQGLKECRLPTQG*HLPQWA Trigger: AGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAG...CCTGCATTCCTTGAGTCCCTGCCCTCTATGATGTAATCTGTGAGATGTAATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | CACAGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTTGGTTTCAAACCACAGCTTATaGAAACAAAAACACTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: HRGVLLTGLLPLSLLSLVSNHSL*KQKHCA Trigger: TGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGA...AACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACAGCTCCGCATTTAGGACTGAGCATTGGCAAATaGTTAGCACAAAAGGCTACA | + |
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Preference number: 2 (lower is better) Translates to: AYENKNTVQRLETAPHLGLSIGK*LAQKAT Trigger: TGTAGCCTTTTGTGCTAATCATTTGCCAATGCTCAG...TCCTAAATGCGGAGCTGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGGTCAAACCACAGCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACACTGAGCATTGGCAAATaGTTAGCACAAAAGGCTACA | + |
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Preference number: 2 (lower is better) Translates to: LGQTTAYENKNTVQRLETLSIGK*LAQKAT Trigger: TGTAGCCTTTTGTGCTAATCATTTGCCAATGCTCAG...TGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGACCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR TCA 90 bp | TTTATTACATCTCACAGATTACATCATAGAGGGCAGGGACTCAAGGAATGCAGGTCAAACCACAGCTTATaGAAACAAAAACACTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: FITSHRLHHRGQGLKECRSNHSL*KQKHCA Trigger: TGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGA...CCTGCATTCCTTGAGTCCCTGCCCTCTATGATGTAATCTGTGAGATGTAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CAA 90 bp | CACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCCATCTGGGTCCGAGGCACTaGGCGAGGAGAGAGCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: HPMTTYPGMAPPTVGWTHLGPRH*ARREQQ Trigger: TTGCTGCTCTCTCCTCGCCAAGTGCCTCGGACCCAG...ATGGGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCTCCTGGGTCCGAGGCACTaGGCGAGGAGAGAGCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GEGEREQCTGISSPSSGLLGPRH*ARREQQ Trigger: TTGCTGCTCTCTCCTCGCCAAGTGCCTCGGACCCAG...GAGCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CAA 90 bp | GACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCTGCACACGAAGGTCCTaGGGAGAGGTTCTGACCCGT | + |
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Preference number: 3 (lower is better) Translates to: DIEAGKPWVLVSPPAVPPCTRRS*GEVLTR Trigger: ACGGGTCAGAACCTCTCCCAAGGACCTTCGTGTGCA...GGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR-3UTR CAA 90 bp | TCTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGTGCACACGAAGGTCCTaGGGAGAGGTTCTGACCCGT | + |
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Preference number: 3 (lower is better) Translates to: SYTPHDYLPRDGTSHSGLCTRRS*GEVLTR Trigger: ACGGGTCAGAACCTCTCCCAAGGACCTTCGTGTGCA...CAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR CCA 72 bp | CCTACAGGCGATCAAGACATAGAAGCAGGAAAGCCCTaGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: PTGDQDIEAGKP*VLVSPPAVPPH Trigger: GTGGGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTCTTGATCGCCTGTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR GCA 72 bp | CACAGATTACATCATAGAGGGCAGGGACTCAAGGAATaGAGGAACCCGGAGGCAGGAACTAATGCAGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: HRLHHRGQGLKE*RNPEAGTNAEA Trigger: GGCCTCTGCATTAGTTCCTGCCTCCGGGTTCCTGCATTCCTTGAGTCCCTGCCCTCTATGATGTAATCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR CCA 72 bp | CTCCCGAAGGTTCCCTGTGATGTCCTCTCGTGCCCTTaGCGCATGTGCCCACACAAGCATTATGCATTTCTT | + |
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Preference number: 3 (lower is better) Translates to: LPKVPCDVLSCP*RMCPHKHYAFL Trigger: AAGAAATGCATAATGCTTGTGTGGGCACATGCGCCAAGGGCACGAGAGGACATCACAGGGAACCTTCGGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR GCA 72 bp | GTTCCCTGTGATGTCCTCTCGTGCCCTTGGCGCATGTaGCCACACAAGCATTATGCATTTCTTTATCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: VPCDVLSCPWRM*PHKHYAFLYLC Trigger: ACAGAGATAAAGAAATGCATAATGCTTGTGTGGGCACATGCGCCAAGGGCACGAGAGGACATCACAGGGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR CCA 72 bp | AAAAATGTTTTTCATTGGGCCAGTGAGATGACTCCGTaGGTAAAGGCTAGCACTGGCTCCCGAAGGTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: KNVFHWASEMTP*VKASTGSRRFP Trigger: AGGGAACCTTCGGGAGCCAGTGCTAGCCTTTACCCACGGAGTCATCTCACTGGCCCAATGAAAAACATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR TCA 72 bp | ATGTACTTCCCACTGACTGCAGGCAAGTGCAGGAGCTaGCAGTTTTGTACTGAGCATTGGCAAATGATTAGC | + |
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Preference number: 3 (lower is better) Translates to: MYFPLTAGKCRS*QFCTEHWQMIS Trigger: GCTAATCATTTGCCAATGCTCAGTACAAAACTGTCAGCTCCTGCACTTGCCTGCAGTCAGTGGGAAGTACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| 3UTR TCA 72 bp | GCAGGAGCTGACAGTTTTGTACTGAGCATTGGCAAATaGTTAGCACAAAAGGCTACATCCCATGAACGTACA | + |
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Preference number: 3 (lower is better) Translates to: AGADSFVLSIGK*LAQKATSHERT Trigger: TGTACGTTCATGGGATGTAGCCTTTTGTGCTAATCATTTGCCAATGCTCAGTACAAAACTGTCAGCTCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR TCA 90 bp | GGAACCCGGAGGCAGGAACTAATGCAGAGGCCACAGAGGAGTGCTGCTGACTGGCCTTTGTACCCACGGTaGCTCCTGTCTGCAACATGC | + |
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Preference number: 4 (lower is better) Translates to: GTRRQELMQRPQRSAADWPLYPR*LLSATC Trigger: GCATGTTGCAGACAGGAGTCACCGTGGGTACAAAGG...CCAGTCAGCAGCACTCCTCTGTGGCCTCTGCATTAGTTCCTGCCTCCGGGTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | TGGGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCGTCTTTCCTCGGGCGTaGCCTCTCTCCACCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: WGRGRENNVLESVLPRVGVFPRA*PLSTFR Trigger: CCTGAAGGTGGAGAGAGGCCACGCCCGAGGAAAGAC...GCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | GGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCTCGTCTTTCCTCGGGCGTaGCCTCTCTCCACCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GEGEREQCTGISSPSSGLVFPRA*PLSTFR Trigger: CCTGAAGGTGGAGAGAGGCCACGCCCGAGGAAAGAC...GAGCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR TCA 90 bp | GACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCCCTTTGTACCCACGGTaGCTCCTGTCTGCAACATGC | + |
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Preference number: 4 (lower is better) Translates to: DIEAGKPWVLVSPPAVPPPLYPR*LLSATC Trigger: GCATGTTGCAGACAGGAGTCACCGTGGGTACAAAGG...GGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | ATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCTGGCCGGATCTTTCCTaGATCCACCAGTTCTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: IHPMTTYPGMAPPTVGWTWPDLS*IHQFCN Trigger: ATTGCAGAACTGGTGGATGCAGGAAAGATCCGGCCA...GGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR TCA 90 bp | CTTATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGCGATTTGGGCTTGTGTaGAACCTCATTCCCACTGAC | + |
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Preference number: 4 (lower is better) Translates to: LIHPMTTYPGMAPPTVGWRFGLV*NLIPTD Trigger: GTCAGTGGGAATGAGGTTTCACACAAGCCCAAATCG...CCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTATAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR GCA 90 bp | ATACACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCATCAATGACCTCATCTaGTCCAAGCTTCCGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: IHPMTTYPGMAPPTVGWTINDLI*SKLPHK Trigger: CTTGTGCGGAAGCTTGGAGCAGATGAGGTCATTGAT...GGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | GACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCTCCGCACAAGTTCACTaGCATCTTTCGAGCAAACGG | + |
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Preference number: 4 (lower is better) Translates to: DIEAGKPWVLVSPPAVPPSAQVH*HLSSKR Trigger: CCGTTTGCTCGAAAGATGCCAGTGAACTTGTGCGGA...GGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR TCA 90 bp | GGAACCCGGAGGCAGGAACTAATGCAGAGGCCACAGAGGAGTGCTGCTGACTGGCTCCTGACCACTTCTTaGGAAAATTTAGAGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: GTRRQELMQRPQRSAADWLLTTS*ENLEPM Trigger: CATGGGCTCTAAATTTTCTCAAGAAGTGGTCAGGAG...CCAGTCAGCAGCACTCCTCTGTGGCCTCTGCATTAGTTCCTGCCTCCGGGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | GACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAGTGCCTCCCATCAATGACCTCATCTaGTCCAAGCTTCCGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: DIEAGKPWVLVSPPAVPPINDLI*SKLPHK Trigger: CTTGTGCGGAAGCTTGGAGCAGATGAGGTCATTGAT...GGGAGGCACTGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | CACCCCATGACTACCTACCCAGGGATGGCACCTCCCACAGTGGGCTGGACCCATGGTAACATCATGTTCTaGGTGAATCGAAGGACTTCA | + |
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Preference number: 4 (lower is better) Translates to: HPMTTYPGMAPPTVGWTHGNIMF*VNRRTS Trigger: TGAAGTCCTTCGATTCACCCAGAACATGATGTTACC...ATGGGTCCAGCCCACTGTGGGAGGTGCCATCCCTGGGTAGGTAGTCATGGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR TCA 90 bp | GGCGATCAAGACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAATGGACCACTGGCCATaGAGAAGGCCCATCTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: GDQDIEAGKPWVLVSPPAMDHWP*RRPICN Trigger: ATTACAGATGGGCCTTCTTCATGGCCAGTGGTCCAT...TGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTCTTGATCGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | GGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCTCACTCCTTGCCAGAGATaGTTCAATGCCTTTGTACCC | + |
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Preference number: 4 (lower is better) Translates to: GEGEREQCTGISSPSSGLTPCQR*FNAFVP Trigger: GGGTACAAAGGCATTGAAGCATCTCTGGCAAGGAGT...GAGCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR TCA 90 bp | GGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCTCACATCATGTTCTGGGTaGATCGAAGGACTTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: GEGEREQCTGISSPSSGLTSCSG*IEGLHS Trigger: AGAATGAAGTCCTTCGATTCACCCAGAACATGATGT...GAGCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR GCA 90 bp | TGGGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCCCTTTGGTTTTCATATaGAGGGGATCACGCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: WGRGRENNVLESVLPRVGPLVFI*RGSRFI Trigger: TATGAAGCGTGATCCCCTGCATATGAAAACCAAAGG...GCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR TCA 90 bp | CACAGAGGAGTGCTGCTGACTGGCTTGCTTCCCCTTAGCTTACTGAGTTTGGTTCTCCTGACCACTTCTTaGGAAAATTTAGAGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: HRGVLLTGLLPLSLLSLVLLTTS*ENLEPM Trigger: CATGGGCTCTAAATTTTCTCAAGAAGTGGTCAGGAG...AACCAAACTCAGTAAGCTAAGGGGAAGCAAGCCAGTCAGCAGCACTCCTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | TTTATTACATCTCACAGATTACATCATAGAGGGCAGGGACTCAAGGAATGCAGGAGGCACGCTTCCCCTTaGAGTTCCTGTCACTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: FITSHRLHHRGQGLKECRRHASP*SSCHSG Trigger: GCCTGAGTGACAGGAACTGCAAGGGGAAGCGTGCCT...CCTGCATTCCTTGAGTCCCTGCCCTCTATGATGTAATCTGTGAGATGTAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR GCA 90 bp | GCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACAGCTCCGCATTTAGGACTCCTGTCTGCAACATaGCATCAGCAACACCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: AYENKNTVQRLETAPHLGLLSAT*HQQHPV Trigger: GACTGGGTGTTGCTGATGGCATGTTGCAGACAGGAG...TCCTAAATGCGGAGCTGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | GGCGATCAAGACATAGAAGCAGGAAAGCCCTGGGTCCTGGTATCTCCTCCAGCAACTAATGCCTCTAAATaGTGGCTTTGGGATAACTGT | + |
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Preference number: 4 (lower is better) Translates to: GDQDIEAGKPWVLVSPPATNASK*WLWDNC Trigger: ACAGTTATCCCAAAGCCACCATTTAGAGGCATTAGT...TGCTGGAGGAGATACCAGGACCCAGGGCTTTCCTGCTTCTATGTCTTGATCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR TCA 90 bp | CTGGGTCAAACCACAGCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACAATGGACCACTGGCCATaGAGAAGGCCCATCTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: LGQTTAYENKNTVQRLETMDHWP*RRPICN Trigger: ATTACAGATGGGCCTTCTTCATGGCCAGTGGTCCAT...TGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGACCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | CTGGGTCAAACCACAGCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACATGGCCGGATCTTTCCTaGATCCACCAGTTCTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: LGQTTAYENKNTVQRLETWPDLS*IHQFCN Trigger: ATTGCAGAACTGGTGGATGCAGGAAAGATCCGGCCA...TGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGACCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | CTGGGTCAAACCACAGCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACATCCGCACAAGTTCACTaGCATCTTTCGAGCAAACGG | + |
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Preference number: 4 (lower is better) Translates to: LGQTTAYENKNTVQRLETSAQVH*HLSSKR Trigger: CCGTTTGCTCGAAAGATGCCAGTGAACTTGTGCGGA...TGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGACCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR GCA 90 bp | TGCCCACACAAGCATTATGCATTTCTTTATCTCTGTAGAGGTGTGTGCATAGTGACTCCTTGCCAGAGATaGTTCAATGCCTTTGTACCC | + |
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Preference number: 4 (lower is better) Translates to: CPHKHYAFLYLCRGVCIVTPCQR*FNAFVP Trigger: GGGTACAAAGGCATTGAAGCATCTCTGGCAAGGAGT...CACTATGCACACACCTCTACAGAGATAAAGAAATGCATAATGCTTGTGTGGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CCA 90 bp | CTGGGTCAAACCACAGCTTATGAAAACAAAAACACTGTGCAGAGGCTGGAGACAGAAACTCTTCTCCTTTaGTTTTCATATGCAGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: LGQTTAYENKNTVQRLETETLLL*FSYAGD Trigger: ATCCCCTGCATATGAAAACCAAAGGAGAAGAGTTTC...TGTCTCCAGCCTCTGCACAGTGTTTTTGTTTTCATAAGCTGTGGTTTGACCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR TCA 90 bp | TGCCCACACAAGCATTATGCATTTCTTTATCTCTGTAGAGGTGTGTGCATAGTGAAACCTCATTCCCACTaGCCACAACAAATTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: CPHKHYAFLYLCRGVCIVKPHSH*PQQILR Trigger: TCTCAGAATTTGTTGTGGTCAGTGGGAATGAGGTTT...CACTATGCACACACCTCTACAGAGATAAAGAAATGCATAATGCTTGTGTGGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR CAA 90 bp | CAGGGATGGCACCTCCCACAGTGGGCTGGACCCATCCACCAACCATCAATCAAGAAGGCACGCTTCCCCTaGCAGTTCCTGTCACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: QGWHLPQWAGPIHQPSIKKARFP*QFLSLR Trigger: CCTGAGTGACAGGAACTGCAAGGGGAAGCGTGCCTT...CTTGATTGATGGTTGGTGGATGGGTCCAGCCCACTGTGGGAGGTGCCATCCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS GCA 90 bp | TACCAACTCCACCTGACGCACCCAAGATTAAGGCACGCTTCCCCTTaGAGTTCCTGTCACTCAGGCCGCCAACCTTGTTTATGGCAGACC | + |
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Preference number: 5 (lower is better) Translates to: YQLHLTHPRLRHASP*SSCHSGRQPCLWQT Trigger: GGTCTGCCATAAACAAGGTTGGCGGCCTGAGTGACAGGAACTGCAAGGGGAAGCGTGCCTTAATCTTGGGTGCGTCAGGTGGAGTTGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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| CDS-3UTR CAA 90 bp | GGAACCCGGAGGCAGGAACTAATGCAGAGGCCACAGAGGAGTGCTGCTGACTGGTCTGTAATGGACTCCTaGCCAGAGATGCTTCAATGC | + |
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Preference number: 5 (lower is better) Translates to: GTRRQELMQRPQRSAADWSVMDS*PEMLQC Trigger: GCATTGAAGCATCTCTGGCAAGGAGTCCATTACAGA...CCAGTCAGCAGCACTCCTCTGTGGCCTCTGCATTAGTTCCTGCCTCCGGGTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS-3UTR CAA 90 bp | TGGGGGAGGGGGAGAGAGAACAATGTACTGGAATCAGTTCTCCCTCGAGTGGGCTCTGTAATGGACTCCTaGCCAGAGATGCTTCAATGC | + |
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Preference number: 5 (lower is better) Translates to: WGRGRENNVLESVLPRVGSVMDS*PEMLQC Trigger: GCATTGAAGCATCTCTGGCAAGGAGTCCATTACAGA...GCCCACTCGAGGGAGAACTGATTCCAGTACATTGTTCTCTCTCCCCCTCCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000054418.12 ENSMUST00000105492.2 |
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| CDS GCA 72 bp | CACCTGACGCACCCAAGATTAAGGCACGCTTCCCCTTaGAGTTCCTGTCACTCAGGCCGCCAACCTTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: HLTHPRLRHASP*SSCHSGRQPCL Trigger: TAAACAAGGTTGGCGGCCTGAGTGACAGGAACTGCAAGGGGAAGCGTGCCTTAATCTTGGGTGCGTCAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054418.12 |
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