Pregenerated sensors for RTL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085584Ensembl transcript IDs: ENSMUST00000165829.3
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGACATCAGTGGTGGGGACAACGTCCCAGAGTGTGGTGCTCCCATaGGAGGTGTGGACAGACTGTCAAAGCCTGGCGATGTCATCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LTSVVGTTSQSVVLP*EVWTDCQSLAMSSA Trigger: AGCTGATGACATCGCCAGGCTTTGACAGTCTGTCCACACCTCTCATGGGAGCACCACACTCTGGGACGTTGTCCCCACCACTGATGTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | GCTGGTGCTCCTCAGTCTGCTGCTGAGAGCCCAGTTCATTCTCCATaGCCTCCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTGGT | + |
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Preference number: 5 (lower is better) Translates to: AGAPQSAAESPVHSP*PPHCSAYRMLAQLG Trigger: ACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGAGGCCATGGAGAATGAACTGGGCTCTCAGCAGCAGACTGAGGAGCACCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 90 bp | GTCATGTGTGGTGTGCTCTTTGAGCCAGGGGCTGTGAATCTGGTGTaGGAGGTAGATGCCTCTCCCGAATCTGTGGCTTTGACGTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: VMCGVLFEPGAVNLV*EVDASPESVALTFR Trigger: TCTGAACGTCAAAGCCACAGATTCGGGAGAGGCATCTACCTCTCACACCAGATTCACAGCCCCTGGCTCAAAGAGCACACCACACATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 90 bp | GTCTCACTAATAGCAGAGGCCGCTCTCCAGAGGATGGGGCTTTTGTaGGCAACATACTCATCTCTGATGAGTCCGAGGCTCTCAATAGGG | + |
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Preference number: 5 (lower is better) Translates to: VSLIAEAALQRMGLL*ATYSSLMSPRLSIG Trigger: CCCTATTGAGAGCCTCGGACTCATCAGAGATGAGTATGTTGCTCACAAAAGCCCCATCCTCTGGAGAGCGGCCTCTGCTATTAGTGAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | TCGCACTGGGAGTGGACACATGTCTCCACAAGCTGTGGCCATTTGTaGTCTGGACTTTGCTCTAGAAGCTGGTGTTCTCGTCAGTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: SHWEWTHVSTSCGHL*SGLCSRSWCSRQWY Trigger: ATACCACTGACGAGAACACCAGCTTCTAGAGCAAAGTCCAGACCACAAATGGCCACAGCTTGTGGAGACATGTGTCCACTCCCAGTGCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 90 bp | TGTCCCGGAGGCTGTGGCTCTCATTTGTGGTGTAGATGTCAACGCTaGGGCTGTGGTTCTTATTTGGGTTGTAGACATTGGTCCAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: CPGGCGSHLWCRCQR*GCGSYLGCRHWSRD Trigger: GTCTCTGGACCAATGTCTACAACCCAAATAAGAACCACAGCCTCAGCGTTGACATCTACACCACAAATGAGAGCCACAGCCTCCGGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | TGGACACATGTCTCCACAAGCTGTGGCCATTTGTGGTCTGGACTTTaGTCTAGAAGCTGGTGTTCTCGTCAGTGGTATGGACATCACTCC | + |
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Preference number: 5 (lower is better) Translates to: WTHVSTSCGHLWSGL*SRSWCSRQWYGHHS Trigger: GGAGTGATGTCCATACCACTGACGAGAACACCAGCTTCTAGAGCAAAGTCCAGACCACAAATGGCCACAGCTTGTGGAGACATGTGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | ATGAGCACAGTGGGTATCCCTTCAGACTCTGGAGGATTTGTTGGCTaGGCTGGTGTTTCCCCAGAAGCTAGAGCTGACATGATCAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: MSTVGIPSDSGGFVG*AGVSPEARADMIRE Trigger: TTCTCTGATCATGTCAGCTCTAGCTTCTGGGGAAACACCAGCCCAGCCAACAAATCCTCCAGAGTCTGAAGGGATACCCACTGTGCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | TCCATGGCCTCCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTaGTTTGAGTTGCCTGAAGAATCCTTCTCTTCAGCCAGCTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: SMASSLFRLQDVGTT*FELPEESFSSASWH Trigger: GTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGAGGCCATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | GGAGATGGGATTTCCTACCTCCATTTGCAAGATGGACCACCTCTCTaGTGCCCCCAGATGAAGAGACACCAGAAATGCCATTTTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GDGISYLHLQDGPPL*CPQMKRHQKCHFLR Trigger: TCTGAGAAAATGGCATTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | GATGGGATTTCCTACCTCCATTTGCAAGATGGACCACCTCTCTGCTaGCCCCAGATGAAGAGACACCAGAAATGCCATTTTCTCAGAATC | + |
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Preference number: 5 (lower is better) Translates to: DGISYLHLQDGPPLC*PQMKRHQKCHFLRI Trigger: GATTCTGAGAAAATGGCATTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | GCTGTATGGGTGTTGCCGCTGTATCAGAAGCTCTCACAGGTAGTGTaGACATCAATCCAGTGGATGAAACTCTTATTGGTGGAGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: AVWVLPLYQKLSQVV*TSIQWMKLLLVEQT Trigger: TGTCTGCTCCACCAATAAGAGTTTCATCCACTGGATTGATGTCCACACTACCTGTGAGAGCTTCTGATACAGCGGCAACACCCATACAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | CCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTGGTTTGAGTTaGCTGAAGAATCCTTCTCTTCAGCCAGCTGGCACTCAGTATACA | + |
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Preference number: 5 (lower is better) Translates to: PHCSAYRMLAQLGLS*LKNPSLQPAGTQYT Trigger: TGTATACTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 90 bp | GCTGAAGTCGAAACAACAGGCAACTGCAACTGTGAATGCAGGATTTaGACTTCTGCTCTGGTCTCTGTCATTGGTCTAGAGAAAGTTGCC | + |
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Preference number: 5 (lower is better) Translates to: AEVETTGNCNCECRI*TSALVSVIGLEKVA Trigger: GGCAACTTTCTCTAGACCAATGACAGAGACCAGAGCAGAAGTTCAAATCCTGCATTCACAGTTGCAGTTGCCTGTTGTTTCGACTTCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | AAGTCAGTGGCATACTGCCTTACTGACTTTTTGCCCTGCTTGGGATaGCAAAGAACAGCACTTAGGATGTCTATCTCAGATAGGGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: KSVAYCLTDFLPCLG*QRTALRMSISDRES Trigger: TGACTCCCTATCTGAGATAGACATCCTAAGTGCTGTTCTTTGCCATCCCAAGCAGGGCAAAAAGTCAGTAAGGCAGTATGCCACTGACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | ACAACTTGGTTTGAGTTGCCTGAAGAATCCTTCTCTTCAGCCAGCTaGCACTCAGTATACAGAGACCTATCTATCAGCTCCTTTAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: TTWFELPEESFSSAS*HSVYRDLSISSFRL Trigger: CAGCCTAAAGGAGCTGATAGATAGGTCTCTGTATACTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 90 bp | GATATTTTGTGTTGTATCTGGGGACATCACTCCAGAACTAGATGCTaGAATCAGTTGACTGGGCATCACTGTAGAGGTGAGGGCTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: DILCCIWGHHSRTRC*NQLTGHHCRGEGCH Trigger: ATGACAGCCCTCACCTCTACAGTGATGCCCAGTCAACTGATTTCAGCATCTAGTTCTGGAGTGATGTCCCCAGATACAACACAAAATATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | ATTAGCGATGTAGGCGTTGCTCCAAAAGCTGCAGTTGTCATTTGCTaGATGAACATTCCAGAAGCTTTGGATGTCATTAGTGGCTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: ISDVGVAPKAAVVIC*MNIPEALDVISGLD Trigger: GTCCAAGCCACTAATGACATCCAAAGCTTCTGGAATGTTCATGCAGCAAATGACAACTGCAGCTTTTGGAGCAACGCCTACATCGCTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | ATAAGCCCTGTGATCTTCTCAAGAAAGCTTTATTATCACTGGAGATaGGATTTCCTACCTCCATTTGCAAGATGGACCACCTCTCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: ISPVIFSRKLYYHWR*DFLPPFARWTTSLL Trigger: CAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATCTCCAGTGATAATAAAGCTTTCTTGAGAAGATCACAGGGCTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 90 bp | GATTTGAACTTCTGCTCTGGTCTCTGTCATTGGTCTAGAGAAAGTTaGCCCTCTGTTTTGAGGGTCACCATTTTCCTCCTTCATCATATT | + |
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Preference number: 5 (lower is better) Translates to: DLNFCSGLCHWSRES*PSVLRVTIFLLHHI Trigger: AATATGATGAAGGAGGAAAATGGTGACCCTCAAAACAGAGGGGCAACTTTCTCTAGACCAATGACAGAGACCAGAGCAGAAGTTCAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 90 bp | TTTGATGTGGACTTCATAAAACCTATGGGCATTGTTCCAGGTGTTTaGGGCATTGTTAAATGTGTAGACATTGTACCAGAGGCTGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: FDVDFIKPMGIVPGV*GIVKCVDIVPEAVL Trigger: AAGCACAGCCTCTGGTACAATGTCTACACATTTAACAATGCCCCAAACACCTGGAACAATGCCCATAGGTTTTATGAAGTCCACATCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GTGGTGGGGACAACGTCCCAGAGTGTGGTGCTCCCATaGGAGGTGTGGACAGACTGTCAAAGCCTGGCGATG | + |
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Preference number: 6 (lower is better) Translates to: VVGTTSQSVVLP*EVWTDCQSLAM Trigger: CATCGCCAGGCTTTGACAGTCTGTCCACACCTCTCATGGGAGCACCACACTCTGGGACGTTGTCCCCACCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | AGAGATCCCTGCAGTGGCTGGAGCTCGCACTGGGAGTaGACACATGTCTCCACAAGCTGTGGCCATTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RDPCSGWSSHWE*THVSTSCGHLW Trigger: CCACAAATGGCCACAGCTTGTGGAGACATGTGTCCACTCCCAGTGCGAGCTCCAGCCACTGCAGGGATCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | AAAGGCATGGTTGTGGTTCCAGGGGCTGAAGCCCTCATCAGTGGCTaGGACATCTCTCCCGGGGTCATAGCTGCAAATTGTGCAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: KGMVVVPGAEALISG*DISPGVIAANCAGP Trigger: AGGCCCTGCACAATTTGCAGCTATGACCCCGGGAGAGATGTCCAAGCCACTGATGAGGGCTTCAGCCCCTGGAACCACAACCATGCCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | CTCCAGAAGTCATGGGGGACATCAAAGGCATGGTTGTaGTTCCAGGGGCTGAAGCCCTCATCAGTGGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LQKSWGTSKAWL*FQGLKPSSVAW Trigger: CCAAGCCACTGATGAGGGCTTCAGCCCCTGGAACCACAACCATGCCTTTGATGTCCCCCATGACTTCTGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GGTGTGCTCTTTGAGCCAGGGGCTGTGAATCTGGTGTaGGAGGTAGATGCCTCTCCCGAATCTGTGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GVLFEPGAVNLV*EVDASPESVAL Trigger: CAAAGCCACAGATTCGGGAGAGGCATCTACCTCTCACACCAGATTCACAGCCCCTGGCTCAAAGAGCACACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | GTTGTGGTTCCAGGGGCTGAAGCCCTCATCAGTGGCTaGGACATCTCTCCCGGGGTCATAGCTGCAAATTGT | + |
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Preference number: 6 (lower is better) Translates to: VVVPGAEALISG*DISPGVIAANC Trigger: ACAATTTGCAGCTATGACCCCGGGAGAGATGTCCAAGCCACTGATGAGGGCTTCAGCCCCTGGAACCACAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | TCTCTCCAGAAGTCATGGGGGACATCAAAGGCATGGTaGTGGTTCCAGGGGCTGAAGCCCTCATCAGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: SLQKSWGTSKAW*WFQGLKPSSVA Trigger: AGCCACTGATGAGGGCTTCAGCCCCTGGAACCACAACCATGCCTTTGATGTCCCCCATGACTTCTGGAGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | AGCTCGCACTGGGAGTGGACACATGTCTCCACAAGCTGTGGCCATTaGTGGTCTGGACTTTGCTCTAGAAGCTGGTGTTCTCGTCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSHWEWTHVSTSCGH*WSGLCSRSWCSRQW Trigger: CCACTGACGAGAACACCAGCTTCTAGAGCAAAGTCCAGACCACAAATGGCCACAGCTTGTGGAGACATGTGTCCACTCCCAGTGCGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | AGCTCCTTTAGGCTGCCGGCCACCTTCAGGAAGATACGGCCCATTTaGGTGGTAACAGCTTCTGAGAGTCCTTCCAGAAACCTGGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: SSFRLPATFRKIRPI*VVTASESPSRNLVR Trigger: ACGGACCAGGTTTCTGGAAGGACTCTCAGAAGCTGTTACCACCAAAATGGGCCGTATCTTCCTGAAGGTGGCCGGCAGCCTAAAGGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GCCTTCGGAAGGCCTGCACTCTGTCGAAGGTGGTCATaGAGACTTTCCTGGGGGTCTCCATGTTCTTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: AFGRPALCRRWS*RLSWGSPCSFK Trigger: CTTGAAAGAACATGGAGACCCCCAGGAAAGTCTTCATGACCACCTTCGACAGAGTGCAGGCCTTCCGAAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | TGCTCCCATGAGAGGTGTGGACAGACTGTCAAAGCCTaGCGATGTCATCAGCTGTGTAGATGTCCCTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: CSHERCGQTVKA*RCHQLCRCPFE Trigger: CTCGAAGGGACATCTACACAGCTGATGACATCGCCAGGCTTTGACAGTCTGTCCACACCTCTCATGGGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ACATCTCTCCAGAAGTCATGGGGGACATCAAAGGCATaGTTGTGGTTCCAGGGGCTGAAGCCCTCATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: TSLQKSWGTSKA*LWFQGLKPSSV Trigger: CACTGATGAGGGCTTCAGCCCCTGGAACCACAACCATGCCTTTGATGTCCCCCATGACTTCTGGAGAGATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | GACGTTCAGAGTGGGTGTCATTCCAAAGGCCGTTTGTaGTGTGGACATTATTCCAGGTGCCGGGGACCTCAT | + |
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Preference number: 6 (lower is better) Translates to: DVQSGCHSKGRL*CGHYSRCRGPH Trigger: ATGAGGTCCCCGGCACCTGGAATAATGTCCACACCACAAACGGCCTTTGGAATGACACCCACTCTGAACGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | AGGCTGCCGGCCACCTTCAGGAAGATACGGCCCATTTaGGTGGTAACAGCTTCTGAGAGTCCTTCCAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: RLPATFRKIRPI*VVTASESPSRN Trigger: GTTTCTGGAAGGACTCTCAGAAGCTGTTACCACCAAAATGGGCCGTATCTTCCTGAAGGTGGCCGGCAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | CAAGGCAACAGGTCTCATGAGCGGTGTGGACACTCCTCCAGAGTCTaGAATGTTCATTGCCTGACTAGGCATCTTCTCAGAGGCTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: QGNRSHERCGHSSRV*NVHCLTRHLLRGCG Trigger: GCCACAGCCTCTGAGAAGATGCCTAGTCAGGCAATGAACATTCAAGACTCTGGAGGAGTGTCCACACCGCTCATGAGACCTGTTGCCTTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GGCCAACAGCAGGAAGTCAGTGGCATACTGCCTTACTaGCTTTTTGCCCTGCTTGGGATGGCAAAGAACAGC | + |
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Preference number: 6 (lower is better) Translates to: GQQQEVSGILPY*LFALLGMAKNS Trigger: GCTGTTCTTTGCCATCCCAAGCAGGGCAAAAAGTCAGTAAGGCAGTATGCCACTGACTTCCTGCTGTTGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | CGGTGTGGACACTCCTCCAGAGTCTTGAATGTTCATTaGCTGACTAGGCATCTTCTCAGAGGCTGTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: RCGHSSRVLNVH*LTRHLLRGCGS Trigger: AGAGCCACAGCCTCTGAGAAGATGCCTAGTCAGGCAATGAACATTCAAGACTCTGGAGGAGTGTCCACACCG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | TCAGAGTGGGTGTCATTCCAAAGGCCGTTTGTGGTGTaGACATTATTCCAGGTGCCGGGGACCTCATTAGTG | + |
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Preference number: 6 (lower is better) Translates to: SEWVSFQRPFVV*TLFQVPGTSLV Trigger: CACTAATGAGGTCCCCGGCACCTGGAATAATGTCCACACCACAAACGGCCTTTGGAATGACACCCACTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | GGGGGTCTCCATGTTCTTTCAAGTAGTAACAGCGTTTaGGAACATGCTGGTGCTCCTCAGTCTGCTGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: GGLHVLSSSNSV*EHAGAPQSAAE Trigger: CTCAGCAGCAGACTGAGGAGCACCAGCATGTTCCCAAACGCTGTTACTACTTGAAAGAACATGGAGACCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | TGGTCATCACTCCTGAGGCTGTGGTCGTCATGTGTGGAGCAGATATaGTCCCATAAACTGGGGTTCTCGAATGTGGAGCTATCTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WSSLLRLWSSCVEQI*SHKLGFSNVELSLL Trigger: CAGGAGAGATAGCTCCACATTCGAGAACCCCAGTTTATGGGACAATATCTGCTCCACACATGACGACCACAGCCTCAGGAGTGATGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | TGGCCTCCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTGGTTaGAGTTGCCTGAAGAATCCTTCTCTTCAGCCAGCTGGCACTCAG | + |
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Preference number: 6 (lower is better) Translates to: WPPHCSAYRMLAQLG*SCLKNPSLQPAGTQ Trigger: CTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGAGGCCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | ACCAGAGGCTGTGCTTGGCATTTGTTCTGTGAATATTaGTCCAGGGCTTGTGACAGCCATCAGTGGAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: TRGCAWHLFCEY*SRACDSHQWSG Trigger: TCCACTCCACTGATGGCTGTCACAAGCCCTGGAGCAATATTCACAGAACAAATGCCAAGCACAGCCTCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | GTCTCCACAAGCTGTGGCCATTTGTGGTCTGGACTTTaGTCTAGAAGCTGGTGTTCTCGTCAGTGGTATGGA | + |
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Preference number: 6 (lower is better) Translates to: VSTSCGHLWSGL*SRSWCSRQWYG Trigger: TCCATACCACTGACGAGAACACCAGCTTCTAGAGCAAAGTCCAGACCACAAATGGCCACAGCTTGTGGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | GGTGTAGATGTCAACGCTGAGGCTGTGGTTCTTATTTaGGTTGTAGACATTGGTCCAGAGACAGGAGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: GVDVNAEAVVLI*VVDIGPETGAR Trigger: CCGAGCTCCTGTCTCTGGACCAATGTCTACAACCCAAATAAGAACCACAGCCTCAGCGTTGACATCTACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ACTTTGTTCCAGAAGCTGTGGCTCTTGTTAGCAGTGTaGACATGCCTCCTGAGGCTGGATCTGTCATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: TLFQKLWLLLAV*TCLLRLDLSSV Trigger: CACAGATGACAGATCCAGCCTCAGGAGGCATGTCCACACTGCTAACAAGAGCCACAGCTTCTGGAACAAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | CTCCTGAGGCTGTGGTCGTCATGTGTGGAGCAGATATaGTCCCATAAACTGGGGTTCTCGAATGTGGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: LLRLWSSCVEQI*SHKLGFSNVEL Trigger: TAGCTCCACATTCGAGAACCCCAGTTTATGGGACAATATCTGCTCCACACATGACGACCACAGCCTCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | TCCTACCTCCATTTGCAAGATGGACCACCTCTCTGCTaGCCCCAGATGAAGAGACACCAGAAATGCCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SYLHLQDGPPLC*PQMKRHQKCHF Trigger: AAAATGGCATTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | ATTTCCTACCTCCATTTGCAAGATGGACCACCTCTCTaGTGCCCCCAGATGAAGAGACACCAGAAATGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ISYLHLQDGPPL*CPQMKRHQKCH Trigger: ATGGCATTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | GCAGGAAGTCAGTGGCATACTGCCTTACTGACTTTTTaGCCTGCTTGGGATGGCAAAGAACAGCACTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: AGSQWHTALLTF*PAWDGKEQHLG Trigger: TCCTAAGTGCTGTTCTTTGCCATCCCAAGCAGGGCAAAAAGTCAGTAAGGCAGTATGCCACTGACTTCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ACATTGCTTCTGAGCCTGGAGCTGTCATTGGTGGTGTaGATGTCACTCCAGGGTTCATATCTGGAATCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TLLLSLELSLVV*MSLQGSYLESG Trigger: TCCTGATTCCAGATATGAACCCTGGAGTGACATCCACACCACCAATGACAGCTCCAGGCTCAGAAGCAATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | ACAGTGGGGACATTGCCTCAACATCTGGGACTGGCTTaGGTAATGTGGCTATTTCTCCAGCATCTGGGATTG | + |
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Preference number: 6 (lower is better) Translates to: TVGTLPQHLGLA*VMWLFLQHLGL Trigger: CAATCCCAGATGCTGGAGAAATAGCCACATTACCAAAGCCAGTCCCAGATGTTGAGGCAATGTCCCCACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | AGGTCTCATGAGCGGTGTGGACACTCCTCCAGAGTCTaGAATGTTCATTGCCTGACTAGGCATCTTCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: RSHERCGHSSRV*NVHCLTRHLLR Trigger: TCTGAGAAGATGCCTAGTCAGGCAATGAACATTCAAGACTCTGGAGGAGTGTCCACACCGCTCATGAGACCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | GGCTGTGGTAAGGATGTAGCTCTAGAGCTCATGACTTaGGTTTGTAGAGTTGACATTGTCCCAGAGGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: GCGKDVALELMT*VCRVDIVPEGV Trigger: CACGCCCTCTGGGACAATGTCAACTCTACAAACCAAAGTCATGAGCTCTAGAGCTACATCCTTACCACAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | TTCCGCTTACAGGATGTTGGCACAACTTGGTTTGAGTaGCCTGAAGAATCCTTCTCTTCAGCCAGCTGGCAC | + |
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Preference number: 6 (lower is better) Translates to: FRLQDVGTTWFE*PEESFSSASWH Trigger: GTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GGCTGTGGCTCTCATTTGTGGTGTAGATGTCAACGCTaGGGCTGTGGTTCTTATTTGGGTTGTAGACATTGG | + |
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Preference number: 6 (lower is better) Translates to: GCGSHLWCRCQR*GCGSYLGCRHW Trigger: CCAATGTCTACAACCCAAATAAGAACCACAGCCTCAGCGTTGACATCTACACCACAAATGAGAGCCACAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ACATTGCCTCAACATCTGGGACTGGCTTTGGTAATGTaGCTATTTCTCCAGCATCTGGGATTGACAGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: TLPQHLGLALVM*LFLQHLGLTGV Trigger: CACTCCTGTCAATCCCAGATGCTGGAGAAATAGCCACATTACCAAAGCCAGTCCCAGATGTTGAGGCAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ACATATTTCCAGAGGCAGGGACTCTCATTAGCTGTATaGGTGTTGCCGCTGTATCAGAAGCTCTCACAGGTA | + |
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Preference number: 6 (lower is better) Translates to: TYFQRQGLSLAV*VLPLYQKLSQV Trigger: TACCTGTGAGAGCTTCTGATACAGCGGCAACACCCATACAGCTAATGAGAGTCCCTGCCTCTGGAAATATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | TCTCTGCAGAATCTGGGGCTGCCATTAGTGATGACATaGTCCCAAAATCAGGTATTGACATCATCCCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SLQNLGLPLVMT*SQNQVLTSSLG Trigger: CCCCAGGGATGATGTCAATACCTGATTTTGGGACAATGTCATCACTAATGGCAGCCCCAGATTCTGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | GAGCTCGGGTTTTCTGTGTGGACACTGACCCAGAGGTaGGGACTGTTGATTGTGACACAGACATTATTTCAG | + |
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Preference number: 6 (lower is better) Translates to: ELGFSVWTLTQR*GLLIVTQTLFQ Trigger: CTGAAATAATGTCTGTGTCACAATCAACAGTCCCAACCTCTGGGTCAGTGTCCACACAGAAAACCCGAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | TTTATTATCACTGGAGATGGGATTTCCTACCTCCATTaGCAAGATGGACCACCTCTCTGCTGCCCCCAGATG | + |
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Preference number: 6 (lower is better) Translates to: FIITGDGISYLH*QDGPPLCCPQM Trigger: CATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATCTCCAGTGATAATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | TCTCCATGGCCTCCTCATTGTTCCGCTTACAGGATGTaGGCACAACTTGGTTTGAGTTGCCTGAAGAATCCT | + |
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Preference number: 6 (lower is better) Translates to: SPWPPHCSAYRM*AQLGLSCLKNP Trigger: AGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGAGGCCATGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | CAAGAAAGCTTTATTATCACTGGAGATGGGATTTCCTACCTCCATTaGCAAGATGGACCACCTCTCTGCTGCCCCCAGATGAAGAGACAC | + |
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Preference number: 6 (lower is better) Translates to: QESFIITGDGISYLH*QDGPPLCCPQMKRH Trigger: GTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATCTCCAGTGATAATAAAGCTTTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | TCCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTGGTTTGAGTaGCCTGAAGAATCCTTCTCTTCAGCCAGCTGGCACTCAGTATAC | + |
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Preference number: 6 (lower is better) Translates to: SSLFRLQDVGTTWFE*PEESFSSASWHSVY Trigger: GTATACTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | CCAGTTCATTCTCCATGGCCTCCTCATTGTTCCGCTTACAGGATGTaGGCACAACTTGGTTTGAGTTGCCTGAAGAATCCTTCTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PVHSPWPPHCSAYRM*AQLGLSCLKNPSLQ Trigger: CTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGAGGCCATGGAGAATGAACTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | TGTTGTATCTGGGGACATCACTCCAGAACTAGATGCTaGAATCAGTTGACTGGGCATCACTGTAGAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: CCIWGHHSRTRC*NQLTGHHCRGE Trigger: CTCACCTCTACAGTGATGCCCAGTCAACTGATTTCAGCATCTAGTTCTGGAGTGATGTCCCCAGATACAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | ATGCAGGATTTGAACTTCTGCTCTGGTCTCTGTCATTaGTCTAGAGAAAGTTGCCCCTCTGTTTTGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: MQDLNFCSGLCH*SRESCPSVLRV Trigger: GACCCTCAAAACAGAGGGGCAACTTTCTCTAGACCAATGACAGAGACCAGAGCAGAAGTTCAAATCCTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | GTGTTGCCGCTGTATCAGAAGCTCTCACAGGTAGTGTaGACATCAATCCAGTGGATGAAACTCTTATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: VLPLYQKLSQVV*TSIQWMKLLLV Trigger: CACCAATAAGAGTTTCATCCACTGGATTGATGTCCACACTACCTGTGAGAGCTTCTGATACAGCGGCAACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | TTTGAGTTGCCTGAAGAATCCTTCTCTTCAGCCAGCTaGCACTCAGTATACAGAGACCTATCTATCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FELPEESFSSAS*HSVYRDLSISS Trigger: GGAGCTGATAGATAGGTCTCTGTATACTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | TCCTCATTGTTCCGCTTACAGGATGTTGGCACAACTTaGTTTGAGTTGCCTGAAGAATCCTTCTCTTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSLFRLQDVGTT*FELPEESFSSA Trigger: GGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | ATGTGTAGACATTGTACCAGAGGCTGTGCTTGGCATTaGTTCTGTGAATATTGCTCCAGGGCTTGTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: MCRHCTRGCAWH*FCEYCSRACDS Trigger: GCTGTCACAAGCCCTGGAGCAATATTCACAGAACAAATGCCAAGCACAGCCTCTGGTACAATGTCTACACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | CATTGTTCCGCTTACAGGATGTTGGCACAACTTGGTTaGAGTTGCCTGAAGAATCCTTCTCTTCAGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: HCSAYRMLAQLG*SCLKNPSLQPA Trigger: AGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAACATCCTGTAAGCGGAACAATG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GCGTTGCTCCAAAAGCTGCAGTTGTCATTTGCTGCATaGACATTCCAGAAGCTTTGGATGTCATTAGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ALLQKLQLSFAA*TFQKLWMSLVA Trigger: AGCCACTAATGACATCCAAAGCTTCTGGAATGTTCATGCAGCAAATGACAACTGCAGCTTTTGGAGCAACGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | GTGCTCATTATAGGTGCAGATATCACTCCAGAGGACTaGATTGGCATTGCCAATGGTGATATCTCTGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: VLIIGADITPED*IGIANGDISAE Trigger: TTCTGCAGAGATATCACCATTGGCAATGCCAATTCAGTCCTCTGGAGTGATATCTGCACCTATAATGAGCAC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | GTAGGCGTTGCTCCAAAAGCTGCAGTTGTCATTTGCTaGATGAACATTCCAGAAGCTTTGGATGTCATTAGT | + |
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Preference number: 6 (lower is better) Translates to: VGVAPKAAVVIC*MNIPEALDVIS Trigger: ACTAATGACATCCAAAGCTTCTGGAATGTTCATGCAGCAAATGACAACTGCAGCTTTTGGAGCAACGCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS GCA 72 bp | GATGTAGGCGTTGCTCCAAAAGCTGCAGTTGTCATTTaGTGCATGAACATTCCAGAAGCTTTGGATGTCATT | + |
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Preference number: 6 (lower is better) Translates to: DVGVAPKAAVVI*CMNIPEALDVI Trigger: AATGACATCCAAAGCTTCTGGAATGTTCATGCAGCAAATGACAACTGCAGCTTTTGGAGCAACGCCTACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 90 bp | CCAGTGGATGAAACTCTTATTGGTGGAGCAGACATGACCTCAGAGTaGATATTTTGTGTTGTATCTGGGGACATCACTCCAGAACTAGAT | + |
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Preference number: 6 (lower is better) Translates to: PVDETLIGGADMTSE*IFCVVSGDITPELD Trigger: ATCTAGTTCTGGAGTGATGTCCCCAGATACAACACAAAATATCAACTCTGAGGTCATGTCTGCTCCACCAATAAGAGTTTCATCCACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CCA 72 bp | GTGATCTTCTCAAGAAAGCTTTATTATCACTGGAGATaGGATTTCCTACCTCCATTTGCAAGATGGACCACC | + |
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Preference number: 6 (lower is better) Translates to: VIFSRKLYYHWR*DFLPPFARWTT Trigger: GGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCCATCTCCAGTGATAATAAAGCTTTCTTGAGAAGATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | CTCTGTCATTGGTCTAGAGAAAGTTGCCCCTCTGTTTaGAGGGTCACCATTTTCCTCCTTCATCATATTGTT | + |
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Preference number: 6 (lower is better) Translates to: LCHWSRESCPSV*RVTIFLLHHIV Trigger: AACAATATGATGAAGGAGGAAAATGGTGACCCTCAAAACAGAGGGGCAACTTTCTCTAGACCAATGACAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS CAA 72 bp | GAAACTCTTATTGGTGGAGCAGACATGACCTCAGAGTaGATATTTTGTGTTGTATCTGGGGACATCACTCCA | + |
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Preference number: 6 (lower is better) Translates to: ETLIGGADMTSE*IFCVVSGDITP Trigger: TGGAGTGATGTCCCCAGATACAACACAAAATATCAACTCTGAGGTCATGTCTGCTCCACCAATAAGAGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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| CDS TCA 72 bp | TTTGAGGGTCACCATTTTCCTCCTTCATCATATTGTTaGAGCGTAGTGAATGTAATGGTATTGACATATCTG | + |
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Preference number: 6 (lower is better) Translates to: FEGHHFPPSSYC*SVVNVMVLTYL Trigger: CAGATATGTCAATACCATTACATTCACTACGCTTCAACAATATGATGAAGGAGGAAAATGGTGACCCTCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165829.3 |
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