Pregenerated sensors for RTL8C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051851

Ensembl transcript IDs: ENSMUST00000063384.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCTCCATCTCGCCATCAAACAGCTCAGGAAATGGGATGGGGTTCTaGCAACGGCCTTTACGCAGCTCGGGCCAGGCCATGAGGGCCATA	+
Preference number: 5 (lower is better) Translates to: FSISPSNSSGNGMGF*QRPLRSSGQAMRAI Trigger: TATGGCCCTCATGGCCTGGCCCGAGCTGCGTAAAGGCCGTTGGCAGAACCCCATCCCATTTCCTGAGCTGTTTGATGGCGAGATGGAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063384.4
CDS GCA 72 bp	TCGCCATCAAACAGCTCAGGAAATGGGATGGGGTTCTaGCAACGGCCTTTACGCAGCTCGGGCCAGGCCATG	+
Preference number: 6 (lower is better) Translates to: SPSNSSGNGMGF*QRPLRSSGQAM Trigger: CATGGCCTGGCCCGAGCTGCGTAAAGGCCGTTGGCAGAACCCCATCCCATTTCCTGAGCTGTTTGATGGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063384.4
CDS CCA 72 bp	TCTCCATCTCGCCATCAAACAGCTCAGGAAATGGGATaGGGTTCTGCCAACGGCCTTTACGCAGCTCGGGCC	+
Preference number: 6 (lower is better) Translates to: SPSRHQTAQEMG*GSANGLYAARA Trigger: GGCCCGAGCTGCGTAAAGGCCGTTGGCAGAACCCCATCCCATTTCCTGAGCTGTTTGATGGCGAGATGGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063384.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu