Pregenerated sensors for RTL8B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067924Ensembl transcript IDs: ENSMUST00000088778.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTTGAAATGGACAGGGGCGCGCGCATaGGAGATCTCCAGGCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: SFKGSSQSTDGLCRGLKWTGARA*EISRQG Trigger: GCCCTGCCTGGAGATCTCGCATGCGCGCGCCCCTGT...CCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR GCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTCAGTGGGAGGCCTTGTaGTCTCCAGAGCCAGGCCCA | + |
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Preference number: 2 (lower is better) Translates to: SQVSPDHLRAAASPQMGCQWEAL*SPEPGP Trigger: TGGGCCTGGCTCTGGAGAGCACAAGGCCTCCCACTG...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CAA 90 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTaGAAATGGCAGCGTCAGCACAGGCCTTATGGGCAGAAGCTTGCA | + |
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Preference number: 2 (lower is better) Translates to: SFKGSSQSTDGLCRG*KWQRQHRPYGQKLA Trigger: TGCAAGCTTCTGCCCATAAGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR GCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGACAGTGTCCAAACCTaGCAGGGATGGGCTGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SQVSPDHLRAAASPQMGCDSVQT*QGWAEL Trigger: CAGCTCAGCCCATCCCTGGCAGGTTTGGACACTGTC...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTTGAAATGGCTTGCAGCTGGAGCCTaGGACAGTGTCCAAACCTGC | + |
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Preference number: 2 (lower is better) Translates to: SFKGSSQSTDGLCRGLKWLAAGA*DSVQTC Trigger: GCAGGTTTGGACACTGTCCCAGGCTCCAGCTGCAAG...CCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTAGCCCATCTTGCAGCTaGAGCCTGGGACAGTGTCCA | + |
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Preference number: 2 (lower is better) Translates to: SQVSPDHLRAAASPQMGCSPSCS*SLGQCP Trigger: TGGACACTGTCCCAGGCTCCAGCTGCAAGATGGGCT...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTCTGAGCTGTCAACAGTaGGAGGCCTTGTGCTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: SQVSPDHLRAAASPQMGCLSCQQ*EALCSP Trigger: TGGAGAGCACAAGGCCTCCCACTGTTGACAGCTCAG...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTTGAAATGGCAAACCTGCCAGGGATaGGCTGAGCTGTCAACAGTG | + |
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Preference number: 2 (lower is better) Translates to: SFKGSSQSTDGLCRGLKWQTCQG*AELSTV Trigger: CACTGTTGACAGCTCAGCCCATCCCTGGCAGGTTTG...CCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTTGAAATGGTCAGCACAGGCCTTATaGGCAGAAGCTTGCAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: SFKGSSQSTDGLCRGLKWSAQAL*AEACSL Trigger: CAGACTGCAAGCTTCTGCCCATAAGGCCTGTGCTGA...CCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGACATGTCCATCAGGTaGCAGTTGATCTGTCCATTA | + |
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Preference number: 2 (lower is better) Translates to: SQVSPDHLRAAASPQMGCDMSIR*QLICPL Trigger: TAATGGACAGATCAACTGCCACCTGATGGACATGTC...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CCA 72 bp | GCTGGAGCCTGGGACAGTGTCCAAACCTGCCAGGGATaGGCTGAGCTGTCAACAGTGGGAGGCCTTGTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: AGAWDSVQTCQG*AELSTVGGLVL Trigger: GAGCACAAGGCCTCCCACTGTTGACAGCTCAGCCCATCCCTGGCAGGTTTGGACACTGTCCCAGGCTCCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR TCA 72 bp | AGCCTGGGACAGTGTCCAAACCTGCCAGGGATGGGCTaGGCTGTCAACAGTGGGAGGCCTTGTGCTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: SLGQCPNLPGMG*AVNSGRPCALQ Trigger: CTGGAGAGCACAAGGCCTCCCACTGTTGACAGCTCAGCCCATCCCTGGCAGGTTTGGACACTGTCCCAGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR TCA 72 bp | GCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTTaGAATGGCAGCGTCAGCACAGGCCTTATGGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: AAASPQMGCAGA*NGSVSTGLMGR Trigger: TCTGCCCATAAGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR GCA 72 bp | TCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTaGAGGGGCTTGAAATGGCAGCGTCAGCACAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: SFKGSSQSTDGL*RGLKWQRQHRP Trigger: AGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CCA 72 bp | AGCCAGTCCACAGATGGGTTGTGCAGGGGCTTGAAATaGCAGCGTCAGCACAGGCCTTATGGGCAGAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: SQSTDGLCRGLK*QRQHRPYGQKL Trigger: AAGCTTCTGCCCATAAGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR-3UTR CAA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTTCCATCAGGTGGCAGTaGATCTGTCCATTAGGTGAC | + |
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Preference number: 3 (lower is better) Translates to: SQVSPDHLRAAASPQMGCSIRWQ*ICPLGD Trigger: GTCACCTAATGGACAGATCAACTGCCACCTGATGGA...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR TCA 72 bp | GCAGTCTGTCCACCAGATAGAAAGCAGTGGACAGCATaGCATGTCCATCAGGTGGCAGTTGATCTGTCCATT | + |
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Preference number: 3 (lower is better) Translates to: AVCPPDRKQWTA*HVHQVAVDLSI Trigger: AATGGACAGATCAACTGCCACCTGATGGACATGTCATGCTGTCCACTGCTTTCTATCTGGTGGACAGACTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CCA 72 bp | ATAGAAAGCAGTGGACAGCATGACATGTCCATCAGGTaGCAGTTGATCTGTCCATTAGGTGACAGGAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: IESSGQHDMSIR*QLICPLGDRSP Trigger: TGGGCTCCTGTCACCTAATGGACAGATCAACTGCCACCTGATGGACATGTCATGCTGTCCACTGCTTTCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CAA 72 bp | GGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTaGAAATGGCAGCGTCAGCACAGGCCTTATGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GSSQSTDGLCRG*KWQRQHRPYGQ Trigger: CTGCCCATAAGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| CDS-3UTR TCA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTAGCCGGTCTGCACGATaGACTCCGGGAGCTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SQVSPDHLRAAASPQMGCSRSAR*TPGACP Trigger: TGGACAAGCTCCCGGAGTTCATCGTGCAGACCGGCT...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CAA 72 bp | AGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTaGTGCAGGGGCTTGAAATGGCAGCGTCAGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: RSFKGSSQSTDG*CRGLKWQRQHR Trigger: CCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CAA 72 bp | AATGGCAGCGTCAGCACAGGCCTTATGGGCAGAAGCTaGCAGTCTGTCCACCAGATAGAAAGCAGTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: NGSVSTGLMGRS*QSVHQIESSGQ Trigger: CTGTCCACTGCTTTCTATCTGGTGGACAGACTGCAAGCTTCTGCCCATAAGGCCTGTGCTGACGCTGCCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| 3UTR CAA 72 bp | AGCAGTGGACAGCATGACATGTCCATCAGGTGGCAGTaGATCTGTCCATTAGGTGACAGGAGCCCATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SSGQHDMSIRWQ*ICPLGDRSPSC Trigger: GCAAGATGGGCTCCTGTCACCTAATGGACAGATCAACTGCCACCTGATGGACATGTCATGCTGTCCACTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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| CDS-3UTR CAA 90 bp | TCCCAGGTGAGTCCAGATCATTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTATGAACTCCGGGAGCTaGTCCATCTCGCCATCAAAC | + |
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Preference number: 5 (lower is better) Translates to: SQVSPDHLRAAASPQMGCMNSGS*SISPSN Trigger: GTTTGATGGCGAGATGGACAAGCTCCCGGAGTTCAT...ACAACCCATCTGTGGACTGGCTGCTGCCCTTAAATGATCTGGACTCACCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088778.5 |
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