Pregenerated sensors for RTL8A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067925

Ensembl transcript IDs: ENSMUST00000088779.5

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CATCTTGCAGCTGGAGCCTGGGACAGTGTCCAAACCTGCCAGGGATaGGCTGAGCTGTCAACAGTGGGAGGCCTTGTGCTCTCCAGAGCC	+
Preference number: 1 (lower is better) Translates to: HLAAGAWDSVQTCQG*AELSTVGGLVLSRA Trigger: GGCTCTGGAGAGCACAAGGCCTCCCACTGTTGACAGCTCAGCCCATCCCTGGCAGGTTTGGACACTGTCCCAGGCTCCAGCTGCAAGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR CAA 90 bp	TCAGTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTGCAGGGGCTaGAAATGGCAGCGTCAGCACAGGCCTTATGGGCAGAAGCTTGCA	+
Preference number: 2 (lower is better) Translates to: SVKGSSQSTDGLCRG*KWQRQHRPYGQKLA Trigger: TGCAAGCTTCTGCCCATAAGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR-3UTR CCA 90 bp	GGAAAAGGCTTCTGTACAGGTAGAGCAGACAAGAAGGAAAGAGCACAGGGGCTAAATGTCCATGGGCCGTaGGCAGCCCAGGTACCTCCC	+
Preference number: 2 (lower is better) Translates to: GKGFCTGRADKKERAQGLNVHGP*AAQVPP Trigger: GGGAGGTACCTGGGCTGCCCACGGCCCATGGACATT...TAGCCCCTGTGCTCTTTCCTTCTTGTCTGCTCTACCTGTACAGAAGCCTTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR-3UTR TCA 90 bp	GTCAGCACAGGCCTTATGGGCAGAAGCTTGCAGTCTGTCCACCAGATAGAAAGCGATCTGTCCATTAGGTaGCAGGAGCCCATCTTGCAG	+
Preference number: 2 (lower is better) Translates to: VSTGLMGRSLQSVHQIESDLSIR*QEPILQ Trigger: CTGCAAGATGGGCTCCTGTCACCTAATGGACAGATC...GCTTTCTATCTGGTGGACAGACTGCAAGCTTCTGCCCATAAGGCCTGTGCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR-3UTR CCA 90 bp	GAAAAGGCTTCTGTACAGGTAGAGCAGACAAGAAGGAAAGAGCACAGGGGCTACGTGAATCAATGTCCATaGGCCGTGGGCAGCCCAGGT	+
Preference number: 2 (lower is better) Translates to: EKASVQVEQTRRKEHRGYVNQCP*AVGSPG Trigger: ACCTGGGCTGCCCACGGCCCATGGACATTGATTCAC...GTAGCCCCTGTGCTCTTTCCTTCTTGTCTGCTCTACCTGTACAGAAGCCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR GCA 72 bp	AAGGCTAGGACACAGGAGGAGACAGGGGCGCGCGCATaGGAGATCTCCAGGCAGGGCGGGCGCGGGAGGTGG	+
Preference number: 3 (lower is better) Translates to: KARTQEETGARA*EISRQGGRGRW Trigger: CCACCTCCCGCGCCCGCCCTGCCTGGAGATCTCGCATGCGCGCGCCCCTGTCTCCTCCTGTGTCCTAGCCTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR GCA 72 bp	TCAGTTAAGGGCAGCAGCCAGTCCACAGATGGGTTGTaGAGGGGCTTGAAATGGCAGCGTCAGCACAGGCCT	+
Preference number: 3 (lower is better) Translates to: SVKGSSQSTDGL*RGLKWQRQHRP Trigger: AGGCCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR-3UTR CAA 90 bp	GGAAAAGGCTTCTGTACAGGTAGAGCAGACAAGAAGGAAAGAGCACAGGGGCTACAACAGTGGGAGGCCTaGTGCTCTCCAGAGCCAGGC	+
Preference number: 3 (lower is better) Translates to: GKGFCTGRADKKERAQGLQQWEA*CSPEPG Trigger: GCCTGGCTCTGGAGAGCACAAGGCCTCCCACTGTTG...TAGCCCCTGTGCTCTTTCCTTCTTGTCTGCTCTACCTGTACAGAAGCCTTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR-3UTR CAA 90 bp	GGAAAAGGCTTCTGTACAGGTAGAGCAGACAAGAAGGAAAGAGCACAGGGGCTACAGTCCACAGATGGGTaGTGCAGGGGCTTGAAATGG	+
Preference number: 3 (lower is better) Translates to: GKGFCTGRADKKERAQGLQSTDG*CRGLKW Trigger: CCATTTCAAGCCCCTGCACAACCCATCTGTGGACTG...TAGCCCCTGTGCTCTTTCCTTCTTGTCTGCTCTACCTGTACAGAAGCCTTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR TCA 72 bp	GCAGTCTGTCCACCAGATAGAAAGCAGTGGACAGCATaGCATGTCCATCAGGTGGCAGGTGATCTGTCCATT	+
Preference number: 3 (lower is better) Translates to: AVCPPDRKQWTA*HVHQVAGDLSI Trigger: AATGGACAGATCACCTGCCACCTGATGGACATGTCATGCTGTCCACTGCTTTCTATCTGGTGGACAGACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR CCA 72 bp	ATAGAAAGCAGTGGACAGCATGACATGTCCATCAGGTaGCAGGTGATCTGTCCATTAGGTGACAGGAGCCCA	+
Preference number: 3 (lower is better) Translates to: IESSGQHDMSIR*QVICPLGDRSP Trigger: TGGGCTCCTGTCACCTAATGGACAGATCACCTGCCACCTGATGGACATGTCATGCTGTCCACTGCTTTCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR GCA 72 bp	CTGTGTTGGAAAAGGCATACACATCAGAGAAAGAGCTaGAAGCTGGTTTCTCAGGAAAACCAGCTAGTCCAC	+
Preference number: 3 (lower is better) Translates to: LCWKRHTHQRKS*KLVSQENQLVH Trigger: GTGGACTAGCTGGTTTTCCTGAGAAACCAGCTTGCAGCTCTTTCTCTGATGTGTATGCCTTTTCCAACACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
3UTR CAA 72 bp	GGATCAGTTAAGGGCAGCAGCCAGTCCACAGATGGGTaGTGCAGGGGCTTGAAATGGCAGCGTCAGCACAGG	+
Preference number: 4 (lower is better) Translates to: GSVKGSSQSTDG*CRGLKWQRQHR Trigger: CCTGTGCTGACGCTGCCATTTCAAGCCCCTGCACAACCCATCTGTGGACTGGCTGCTGCCCTTAACTGATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
CDS TCA 90 bp	CTGGAAACGGGATGGGGTTCCGCCGACGGCGCCGCCTGTTGTGCCTaGGCATGTAGGCCTTCGGCCTCTTTACCTTGCCTTGGCCTTCCA	+
Preference number: 5 (lower is better) Translates to: LETGWGSADGAACCA*ACRPSASLPCLGLP Trigger: TGGAAGGCCAAGGCAAGGTAAAGAGGCCGAAGGCCTACATGCTCAGGCACAACAGGCGGCGCCGTCGGCGGAACCCCATCCCGTTTCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
CDS CCA 72 bp	CTCCGGGAGCTTGTCCATCTCGCCATCAAACAGCTCTaGAAACGGGATGGGGTTCCGCCGACGGCGCCGCCT	+
Preference number: 6 (lower is better) Translates to: LRELVHLAIKQL*KRDGVPPTAPP Trigger: AGGCGGCGCCGTCGGCGGAACCCCATCCCGTTTCCAGAGCTGTTTGATGGCGAGATGGACAAGCTCCCGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5
CDS TCA 72 bp	GGATGGGGTTCCGCCGACGGCGCCGCCTGTTGTGCCTaGGCATGTAGGCCTTCGGCCTCTTTACCTTGCCTT	+
Preference number: 6 (lower is better) Translates to: GWGSADGAACCA*ACRPSASLPCL Trigger: AAGGCAAGGTAAAGAGGCCGAAGGCCTACATGCTCAGGCACAACAGGCGGCGCCGTCGGCGGAACCCCATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088779.5