RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RTL5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049191

Ensembl transcript IDs: ENSMUST00000113631.2, ENSMUST00000119076.9, ENSMUST00000188731.2

Found 299 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTaGTTGGTCTCCCTGGTCAGGGCCACAAGCATTCAGACTAAGAAG +
Preference number: 1 (lower is better)
Translates to: GPSAPRGPQASLVLM*LVSLVRATSIQTKK
Trigger: CTTCTTAGTCTGAATGCTTGTGGCCCTGACCAGGGAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp GGGTCTTCCTCCAGTCTGGGGCTTTCGTACGGACTGGTCAGTAGATaGGGCACGTACAGCAGCAATAGCAGAGGCAAGGGAAGCAGGGGA +
Preference number: 1 (lower is better)
Translates to: GSSSSLGLSYGLVSR*GTYSSNSRGKGSRG
Trigger: TCCCCTGCTTCCCTTGCCTCTGCTATTGCTGCTGTACGTGCCCCATCTACTGACCAGTCCGTACGAAAGCCCCAGACTGGAGGAAGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 90 bp GTGCGAGGACTGAGCCGAGTACACAGCAAGAGGACTGTTGAGTCCTaGCCTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTC +
Preference number: 1 (lower is better)
Translates to: VRGLSRVHSKRTVES*PLLSWMALVGHFSL
Trigger: GAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTGTGTACTCGGCTCAGTCCTCGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp GCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTaGGCTTCTCCACAAGGACACAGGCAGCGTGACCAGTATGTTGGC +
Preference number: 1 (lower is better)
Translates to: AKGDLWNLRYKTPAS*ASPQGHRQRDQYVG
Trigger: GCCAACATACTGGTCACGCTGCCTGTGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 90 bp CAGATGACAGCCATTTTCAGGCCTGCTGCTGGCCCTCCAGCAGGATaGCCTCACCTTGAAGAAAGAAAGAAATGCTGCCTCTGTGTGGCG +
Preference number: 1 (lower is better)
Translates to: QMTAIFRPAAGPPAG*PHLEERKKCCLCVA
Trigger: CGCCACACAGAGGCAGCATTTCTTTCTTTCTTCAAGGTGAGGTCATCCTGCTGGAGGGCCAGCAGCAGGCCTGAAAATGGCTGTCATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR GCA 90 bp CCCCTCCCGCCCCCAAAGAGAGTAAACCTCAGTCAAGTTGTCCATTaGACTCATGGCTTTGCAGGTTCTCGCTGCTCTAGGTGTAGGTTC +
Preference number: 1 (lower is better)
Translates to: PLPPPKRVNLSQVVH*THGFAGSRCSRCRF
Trigger: GAACCTACACCTAGAGCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTACTCTCTTTGGGGGCGGGAGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp ACAATCTGGAATTCTGCAGGTCTTCTTTGGGGTCTTCCTCCAGTCTaGGGCTTTCGTACGGACTGGTCAGTAGATGGGGCACGTACAGCA +
Preference number: 1 (lower is better)
Translates to: TIWNSAGLLWGLPPV*GFRTDWSVDGARTA
Trigger: TGCTGTACGTGCCCCATCTACTGACCAGTCCGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp GCATTCAGACTAAGAAGCACCGTGAAGACAGGCAAAGCCTGTGTGTaGCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTC +
Preference number: 1 (lower is better)
Translates to: AFRLRSTVKTGKACV*QGGSLESEVQDTCF
Trigger: GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTTCACGGTGCTTCTTAGTCTGAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp GCAAGAGGACTGTTGAGTCCTGACCTCTCCTTTCCTGGATGGCCCTaGTTGGGCACTTTTCACTCTTCTGGTTGTGGTTGCGAAACAATC +
Preference number: 1 (lower is better)
Translates to: ARGLLSPDLSFPGWP*LGTFHSSGCGCETI
Trigger: GATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp TACACAGCAAGAGGACTGTTGAGTCCTGACCTCTCCTTTCCTGGATaGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTTGCGAA +
Preference number: 1 (lower is better)
Translates to: YTARGLLSPDLSFPG*PWLGTFHSSGCGCE
Trigger: TTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp CCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTTaGGAAACAATCTGGAATTCTGCAGGTCTTCTTTGGGGTCTTCCT +
Preference number: 1 (lower is better)
Translates to: PGWPWLGTFHSSGCG*ETIWNSAGLLWGLP
Trigger: AGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp CTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTaGTCTAGGTGTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATA +
Preference number: 1 (lower is better)
Translates to: LSQVVHCTHGFAGSR*SRCRFPFQALLLEI
Trigger: TATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTACACCTAGAGCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp TCTGGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTTaGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGGACTGGTCAGTA +
Preference number: 1 (lower is better)
Translates to: SGCGCETIWNSAGLL*GLPPVWGFRTDWSV
Trigger: TACTGACCAGTCCGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp AAGGTGACCAGTGCCATTTACAAGAACAGGCCAAGAGACTTGCTTTaGAACTTTGTGCGAGGACTGAGCCGAGTACACAGCAAGAGGACT +
Preference number: 1 (lower is better)
Translates to: KVTSAIYKNRPRDLL*NFVRGLSRVHSKRT
Trigger: AGTCCTCTTGCTGTGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTCTTGTAAATGGCACTGGTCACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp CTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTaGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTTGGGGTCT +
Preference number: 1 (lower is better)
Translates to: LSWMALVGHFSLFWL*LRNNLEFCRSSLGS
Trigger: AGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp CCTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTaGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTTG +
Preference number: 1 (lower is better)
Translates to: PLLSWMALVGHFSLF*LWLRNNLEFCRSSL
Trigger: CAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 90 bp AACACTGTAGAACACAGGGCAAAGAAGCACAGGAGAGGCGAAGATTaGGGACAACTAGAGTTGGAGACAAAGGTGACCAGTGCCATTTAC +
Preference number: 1 (lower is better)
Translates to: NTVEHRAKKHRRGED*GQLELETKVTSAIY
Trigger: GTAAATGGCACTGGTCACCTTTGTCTCCAACTCTAGTTGTCCCCAATCTTCGCCTCTCCTGTGCTTCTTTGCCCTGTGTTCTACAGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 90 bp AAAAAGAGACACAAAACAAAGTCTTCACATGGTTCCCTATCCTCCTaGCTTGGTGGGAATGGGCAAGGCAAACAACTGAAATGTCTAACA +
Preference number: 1 (lower is better)
Translates to: KKRHKTKSSHGSLSS*LGGNGQGKQLKCLT
Trigger: TGTTAGACATTTCAGTTGTTTGCCTTGCCCATTCCCACCAAGGCAGGAGGATAGGGAACCATGTGAAGACTTTGTTTTGTGTCTCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR-3UTR CCA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGAGGGTGTGTTCCCCGTaGCCAACTCACCCCCAGTGT +
Preference number: 2 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLRVCSP*PTHPQC
Trigger: ACACTGGGGGTGAGTTGGCCACGGGGAACACACCCT...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCTCTGTGCAGAGGTCCTaGGGCAGGAGTCTGAGGGGA +
Preference number: 2 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCSVQRS*GRSLRG
Trigger: TCCCCTCAGACTCCTGCCTCAGGACCTCTGCACAGA...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp CCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTTGGTCTCAGGACACAGGCAGCGTaGCCAGTATGTTGGCATCAG +
Preference number: 2 (lower is better)
Translates to: PLCPQRPTGQFSAHVLGLRTQAA*PVCWHQ
Trigger: CTGATGCCAACATACTGGTCACGCTGCCTGTGTCCT...GAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTTGGTCTCGGCAAAGCCTGTGTGTaGCAAGGGGGATCTCTGGAA +
Preference number: 2 (lower is better)
Translates to: PLCPQRPTGQFSAHVLGLGKACV*QGGSLE
Trigger: TTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC...GAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp CCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTaGGTCTCCCTGGTCAGGGCCACAAGCATTCAGACTAAGAAGCAC +
Preference number: 2 (lower is better)
Translates to: PSAPRGPQASLVLMC*VSLVRATSIQTKKH
Trigger: GTGCTTCTTAGTCTGAATGCTTGTGGCCCTGACCAGGGAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCGGGCACCTGAGTTGGTaGCCAAGAAGCCCCAGGAGT +
Preference number: 2 (lower is better)
Translates to: PQPKEALRASDSSCSCHIGHLSW*PRSPRS
Trigger: ACTCCTGGGGCTTCTTGGGCACCAACTCAGGTGCCC...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCGAGGGGCTTAAAGAGTaGGCCAGCAGGGCTACCCCC +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTEGLKE*ASRATP
Trigger: GGGGGTAGCCCTGCTGGCCCACTCTTTAAGCCCCTC...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCAGGGTGTGTTCCCCGTaGCCAACTCACCCCCAGTGT +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTRVCSP*PTHPQC
Trigger: ACACTGGGGGTGAGTTGGCCACGGGGAACACACCCT...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCCCCCAGCACTCAAAGTaGGGTCTGTTTGCCCGCCAT +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTPQHSK*GLFARH
Trigger: ATGGCGGGCAAACAGACCTCACTTTGAGTGCTGGGG...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTAGGGTGTGTTCCCCGTaGCCAACTCACCCCCAGTGT +
Preference number: 2 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASRVCSP*PTHPQC
Trigger: ACACTGGGGGTGAGTTGGCCACGGGGAACACACCCT...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCATCAGAGGCCTCTGGCTaGGACTGCAGTCTTAAAGCC +
Preference number: 2 (lower is better)
Translates to: ERFAPHVRTIGVLASNAASEASG*DCSLKA
Trigger: GGCTTTAAGACTGCAGTCCCAGCCAGAGGCCTCTGA...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAAGGACTGTTGAGTCCTaGCCTCTCCTTTCCTGGATG +
Preference number: 2 (lower is better)
Translates to: ERFAPHVRTIGVLASNAARTVES*PLLSWM
Trigger: CATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCT...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAACCTGAGGCAGGAGTCTaGGGGGAAGGTAAACCCCAG +
Preference number: 2 (lower is better)
Translates to: KTGKACVCQGGSLESEVQPEAGV*GEGKPQ
Trigger: CTGGGGTTTACCTTCCCCTCAGACTCCTGCCTCAGG...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCCTGCTTTCTTCCTGCTaGCCACGGACAACTTGGGCT +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTLLSSC*PRTTWA
Trigger: AGCCCAAGTTGTCCGTGGTCAGCAGGAAGAAAGCAG...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAATGAGTCCAGTCTCTaGAGAGCCAGCCCTGTTTTC +
Preference number: 2 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCNESSL*RASPVF
Trigger: GAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATT...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCCTCTCCTTTCCTGGATaGCCCTGGTTGGGCACTTTT +
Preference number: 2 (lower is better)
Translates to: PQPKEALRASDSSCSCHILSFPG*PWLGTF
Trigger: AAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp CCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTTGGTCTCAACAAAGTCTTCACATaGTTCCCTATCCTCCTGCCT +
Preference number: 2 (lower is better)
Translates to: PLCPQRPTGQFSAHVLGLNKVFT*FPILLP
Trigger: AGGCAGGAGGATAGGGAACCATGTGAAGACTTTGTT...GAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR-3UTR TCA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCCAGCAAGAGGACTGTTaGGTCCTGACCTCTCCTTTC +
Preference number: 2 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFQQEDC*VLTSPF
Trigger: GAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTG...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCCAGCAAGAGGACTGTTaGGTCCTGACCTCTCCTTTC +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTQQEDC*VLTSPF
Trigger: GAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTG...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACACAGGCAGCGTaGCCAGTATGTTGGCATCAG +
Preference number: 2 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTRTQAA*PVCWHQ
Trigger: CTGATGCCAACATACTGGTCACGCTGCCTGTGTCCT...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTACCCCAGCACTCAAAGTaGGGTCTGTTTGCCCGCCAT +
Preference number: 2 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLPQHSK*GLFARH
Trigger: ATGGCGGGCAAACAGACCTCACTTTGAGTGCTGGGG...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCTCTGTGCAGAGGTCCTaGGGCAGGAGTCTGAGGGGA +
Preference number: 2 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLSVQRS*GRSLRG
Trigger: TCCCCTCAGACTCCTGCCTCAGGACCTCTGCACAGA...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCACTGACTCAGGAAGGTaGAATGATTCTGCGTCACAC +
Preference number: 2 (lower is better)
Translates to: PQPKEALRASDSSCSCHITDSGR*NDSASH
Trigger: GTGTGACGCAGAATCATTTCACCTTCCTGAGTCAGT...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR-3UTR GCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCACCAAGAGACTTGCTTTaGAACTTTGTGCGAGGACTG +
Preference number: 2 (lower is better)
Translates to: ERFAPHVRTIGVLASNAAPRDLL*NFVRGL
Trigger: CAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGG...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAACAGGCCAAGAGACTTaGTTTGCAACTTTGTGCGAG +
Preference number: 2 (lower is better)
Translates to: ERFAPHVRTIGVLASNAATGQET*FATLCE
Trigger: CTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGT...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCAGCAGTGAACCAGGCTaGCATTTTGTGGCCAGAATG +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTSSEPG*HFVARM
Trigger: CATTCTGGCCACAAAATGGCAGCCTGGTTCACTGCT...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACACTCTCCTTTCCTGGATaGCCCTGGTTGGGCACTTTT +
Preference number: 2 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTLSFPG*PWLGTF
Trigger: AAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCAGTCAAGTTGTCCATTaGACTCATGGCTTTGCAGGT +
Preference number: 2 (lower is better)
Translates to: PQPKEALRASDSSCSCHISQVVH*THGFAG
Trigger: ACCTGCAAAGCCATGAGTGCAATGGACAACTTGACT...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGTTGGCCAGCAATGCTaGAATGAGTCCAGTCTCTGC +
Preference number: 2 (lower is better)
Translates to: KTGKACVCQGGSLESEVQVGQQC*NESSLC
Trigger: GCAGAGACTGGACTCATTGCAGCATTGCTGGCCAAC...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCATTCAGGCCCTTCTGCTaGAAATATGGCGAGTACATA +
Preference number: 2 (lower is better)
Translates to: ERFAPHVRTIGVLASNAAFRPFC*KYGEYI
Trigger: TATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAA...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp TTCTGGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTaGGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGGACTGGTCAGT +
Preference number: 2 (lower is better)
Translates to: FWLWLRNNLEFCRSS*GSSSSLGLSYGLVS
Trigger: ACTGACCAGTCCGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp CTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTaGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTTGGGG +
Preference number: 2 (lower is better)
Translates to: LLSWMALVGHFSLFW*WLRNNLEFCRSSLG
Trigger: CCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTACAGCAAGAGGACTGTTaGGTCCTGACCTCTCCTTTC +
Preference number: 2 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLQQEDC*VLTSPF
Trigger: GAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTG...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GTTAAAGGAAGTTCAAGGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTAACAATCTGGAATTCTaGAGGTCTTCTTTGGGGTCT +
Preference number: 2 (lower is better)
Translates to: VKGSSRPLCPQRPTGQFSNNLEF*RSSLGS
Trigger: AGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTT...ACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCCTTGAACTTCCTTTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTGACAAAGGTGACCAGTaGCATTTACAAGAACAGGCC +
Preference number: 2 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASDKGDQ*HLQEQA
Trigger: GGCCTGTTCTTGTAAATGGCACTGGTCACCTTTGTC...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAGACAAAGGTGACCAGTaGCATTTACAAGAACAGGCC +
Preference number: 2 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTDKGDQ*HLQEQA
Trigger: GGCCTGTTCTTGTAAATGGCACTGGTCACCTTTGTC...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAAATGAGTCCAGTCTCTaGAGAGCCAGCCCTGTTTTC +
Preference number: 2 (lower is better)
Translates to: KTGKACVCQGGSLESEVQNESSL*RASPVF
Trigger: GAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATT...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAGAAGCCCCAGGAGTGTaGAGGAGGCAGTCGCCTCTT +
Preference number: 2 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEEAPGV*RRQSPL
Trigger: AAGAGGCGACTGCCTCCTGCACACTCCTGGGGCTTC...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp AAAGGTGACCAGTGCCATTTACAAGAACAGGCCAAGAGACTTGCTTaGCAACTTTGTGCGAGGACTGAGCCGAGTACACAGCAAGAGGAC +
Preference number: 2 (lower is better)
Translates to: KGDQCHLQEQAKRLA*QLCARTEPSTQQED
Trigger: GTCCTCTTGCTGTGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTCTTGTAAATGGCACTGGTCACCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp GAGACAAAGGTGACCAGTGCCATTTACAAGAACAGGCCAAGAGACTaGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACACAGCAAG +
Preference number: 2 (lower is better)
Translates to: ETKVTSAIYKNRPRD*LCNFVRGLSRVHSK
Trigger: CTTGCTGTGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTCTTGTAAATGGCACTGGTCACCTTTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp AGGGCAAAGAAGCACAGGAGAGGCGAAGATTGGGGACAACTAGAGTaGGAGACAAAGGTGACCAGTGCCATTTACAAGAACAGGCCAAGA +
Preference number: 2 (lower is better)
Translates to: RAKKHRRGEDWGQLE*ETKVTSAIYKNRPR
Trigger: TCTTGGCCTGTTCTTGTAAATGGCACTGGTCACCTTTGTCTCCAACTCTAGTTGTCCCCAATCTTCGCCTCTCCTGTGCTTCTTTGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGTCAAGTTGTCCATTaGACTCATGGCTTTGCAGGT +
Preference number: 2 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTSQVVH*THGFAG
Trigger: ACCTGCAAAGCCATGAGTGCAATGGACAACTTGACT...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTAATTAGCCAAAGTCTGTaGAGAGGTCCTGAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLISQSL*RGPEAG
Trigger: TCCTGCCTCAGGACCTCTGCACAGACTTTGGCTAAT...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGGAAGAGACACCATTTaGTGCTTTCTTCCTGCTGAC +
Preference number: 2 (lower is better)
Translates to: KTGKACVCQGGSLESEVQGRDTI*CFLPAD
Trigger: GTCAGCAGGAAGAAAGCAGCAAATGGTGTCTCTTCC...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTCGTTGTCTAGTAAGTaGCCTCAGAGCATTAAGAGT +
Preference number: 2 (lower is better)
Translates to: GKACVCQGGSLESEVQDTSLSSK*PQSIKS
Trigger: ACTCTTAATGCTCTGAGGCCACTTACTAGACAACGA...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCTCAGAGGCCTCTGGCTaGGACTGCAGTCTTAAAGCC +
Preference number: 2 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCSEASG*DCSLKA
Trigger: GGCTTTAAGACTGCAGTCCCAGCCAGAGGCCTCTGA...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR TCA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCAGGACTGTTGAGTCCTaGCCTCTCCTTTCCTGGATG +
Preference number: 2 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCRTVES*PLLSWM
Trigger: CATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCT...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCCCAAGAGACTTGCTTTaGAACTTTGTGCGAGGACTG +
Preference number: 2 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCPRDLL*NFVRGL
Trigger: CAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGG...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTGACAAAGGTGACCAGTaGCATTTACAAGAACAGGCC +
Preference number: 2 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSDKGDQ*HLQEQA
Trigger: GGCCTGTTCTTGTAAATGGCACTGGTCACCTTTGTC...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAAGAGACACCATTTGCTaGTTTCTTCCTGCTGACCAC +
Preference number: 2 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTRDTIC*FLPADH
Trigger: GTGGTCAGCAGGAAGAAAGCAGCAAATGGTGTCTCT...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAGGTTGCGAAACAATCTaGAATTCTGCAGGTCTTCTT +
Preference number: 2 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTGCETI*NSAGLL
Trigger: AAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACC...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTCTCTCCTTTCCTGGATaGCCCTGGTTGGGCACTTTT +
Preference number: 2 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLLSFPG*PWLGTF
Trigger: AAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAATTCAGGCCCTTCTGCTaGAAATATGGCGAGTACATA +
Preference number: 2 (lower is better)
Translates to: KTGKACVCQGGSLESEVQFRPFC*KYGEYI
Trigger: TATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAA...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCTGTCCATTGCACTCATaGCTTTGCAGGTTCTCGCTG +
Preference number: 2 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLCPLHS*LCRFSL
Trigger: CAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACA...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCAATGAGTCCAGTCTCTaGAGAGCCAGCCCTGTTTTC +
Preference number: 2 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCNESSL*RASPVF
Trigger: GAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATT...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTCCTCTTAAGCCACACTaGTTAACTGAAGTTCAACAA +
Preference number: 2 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASPLKPH*LTEVQQ
Trigger: TTGTTGAACTTCAGTTAACCAGTGTGGCTTAAGAGG...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 90 bp CTGCCTCTGTGTGGCGAGGTTCTGAATGGTCGGGAGGAAGCTATTTaGTCCTTATGGCATTCACTACTTCCCATATTTCCCATAATGACT +
Preference number: 2 (lower is better)
Translates to: LPLCGEVLNGREEAI*SLWHSLLPIFPIMT
Trigger: AGTCATTATGGGAAATATGGGAAGTAGTGAATGCCATAAGGACAAAATAGCTTCCTCCCGACCATTCAGAACCTCGCCACACAGAGGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR-3UTR GCA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTAACAATCTGGAATTCTaGAGGTCTTCTTTGGGGTCT +
Preference number: 2 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSNNLEF*RSSLGS
Trigger: AGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTT...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAATTAGCCAAAGTCTGTaGAGAGGTCCTGAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEISQSL*RGPEAG
Trigger: TCCTGCCTCAGGACCTCTGCACAGACTTTGGCTAAT...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCGTTGTCTAGTAAGTaGCCTCAGAGCATTAAGAGT +
Preference number: 2 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSSLSSK*PQSIKS
Trigger: ACTCTTAATGCTCTGAGGCCACTTACTAGACAACGA...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCTTCAGGCCCTTCTGCTaGAAATATGGCGAGTACATA +
Preference number: 2 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCFRPFC*KYGEYI
Trigger: TATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAA...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACACCTCTTAAGCCACACTaGTTAACTGAAGTTCAACAA +
Preference number: 2 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTPLKPH*LTEVQQ
Trigger: TTGTTGAACTTCAGTTAACCAGTGTGGCTTAAGAGG...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR GCA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTAACAATCTGGAATTCTaGAGGTCTTCTTTGGGGTCT +
Preference number: 2 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLNNLEF*RSSLGS
Trigger: AGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTT...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CCA 90 bp CTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTGGTGTCATCCGGTTGCGAAACAATCTaGAATTCTGCAGGTCTTCTT +
Preference number: 2 (lower is better)
Translates to: LSGPSAGNMASTYFLVSSGCETI*NSAGLL
Trigger: AAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACC...GGATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp GCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTaGTTGGTCTCCCTGGTCAGGGCCACAAGCATTCAG +
Preference number: 3 (lower is better)
Translates to: APRGPQASLVLM*LVSLVRATSIQ
Trigger: CTGAATGCTTGTGGCCCTGACCAGGGAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGCCTGGATGGCCCTGGTaGGGCACTTTTCACTCTTCT +
Preference number: 3 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLPGWPW*GTFHSS
Trigger: AGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGG...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGTTCTGCAGGTCTTCTTaGGGGTCTTCCTCCAGTCTG +
Preference number: 3 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLFCRSS*GSSSSL
Trigger: CAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAA...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp GCGAGGACTGAGCCGAGTACACAGCAAGAGGACTGTTaGGTCCTGACCTCTCCTTTCCTGGATGGCCCTGGT +
Preference number: 3 (lower is better)
Translates to: ARTEPSTQQEDC*VLTSPFLDGPG
Trigger: ACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTGTGTACTCGGCTCAGTCCTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp CCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATaGTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCT +
Preference number: 3 (lower is better)
Translates to: PSRENHRGVGQQ*CNESSLCRASP
Trigger: AGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp GCCTGCTGCTGGCCCTCCAGCAGGATGACCTCACCTTaGAGAAAGAAAGAAATGCTGCCTCTGTGTGGCGAG +
Preference number: 3 (lower is better)
Translates to: ACCWPSSRMTSP*RKKEMLPLCGE
Trigger: CTCGCCACACAGAGGCAGCATTTCTTTCTTTCTTCAAGGTGAGGTCATCCTGCTGGAGGGCCAGCAGCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR CCA 72 bp TCCAGTCTGGGGCTTTCGTACGGACTGGTCAGTAGATaGGGCACGTACAGCAGCAATAGCAGAGGCAAGGGA +
Preference number: 3 (lower is better)
Translates to: SSLGLSYGLVSR*GTYSSNSRGKG
Trigger: TCCCTTGCCTCTGCTATTGCTGCTGTACGTGCCCCATCTACTGACCAGTCCGTACGAAAGCCCCAGACTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp GGCACCGTGCAGCAAGTTCAATGTCCAGGAACAACTTaGGCCAGCAGTGAACCAGGCTGCCATTTTGTGGCC +
Preference number: 3 (lower is better)
Translates to: GTVQQVQCPGTT*ASSEPGCHFVA
Trigger: GGCCACAAAATGGCAGCCTGGTTCACTGCTGGCCCAAGTTGTTCCTGGACATTGAACTTGCTGCACGGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GTTAAAGGAAGTTCAAGGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTTTCTGCAGGTCTTCTTaGGGGTCTTCCTCCAGTCTG +
Preference number: 3 (lower is better)
Translates to: VKGSSRPLCPQRPTGQFSFCRSS*GSSSSL
Trigger: CAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAA...ACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCCTTGAACTTCCTTTAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GTTAAAGGAAGTTCAAGGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTAGAACCATAGGGGTGTaGGCCAGCAATGCTGCAATG +
Preference number: 3 (lower is better)
Translates to: VKGSSRPLCPQRPTGQFSRTIGV*ASNAAM
Trigger: CATTGCAGCATTGCTGGCCAACACCCCTATGGTTCT...ACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCCTTGAACTTCCTTTAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCAGCGTGACCAGTATGTaGGCATCAGCAGACAGGGTC +
Preference number: 3 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFSVTSM*ASADRV
Trigger: GACCCTGTCTGCTGATGCCAACATACTGGTCACGCT...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp TCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTaGAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTT +
Preference number: 3 (lower is better)
Translates to: SRENHRGVGQQC*NESSLCRASPV
Trigger: AACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGTTTTCACTCTTCTGGTaGTGGTTGCGAAACAATCTG +
Preference number: 3 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLFSLFW*WLRNNL
Trigger: CAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAA...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp GCCATTTTCAGGCCTGCTGCTGGCCCTCCAGCAGGATaGCCTCACCTTGAAGAAAGAAAGAAATGCTGCCTC +
Preference number: 3 (lower is better)
Translates to: AIFRPAAGPPAG*PHLEERKKCCL
Trigger: GAGGCAGCATTTCTTTCTTTCTTCAAGGTGAGGTCATCCTGCTGGAGGGCCAGCAGCAGGCCTGAAAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR TCA 72 bp TGCTTCTTGCGCTTCTCCACAAGGACACAGGCAGCGTaGCCAGTATGTTGGCATCAGCAGACAGGGTCCATA +
Preference number: 3 (lower is better)
Translates to: CFLRFSTRTQAA*PVCWHQQTGSI
Trigger: TATGGACCCTGTCTGCTGATGCCAACATACTGGTCACGCTGCCTGTGTCCTTGTGGAGAAGCGCAAGAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp CAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTaGGGTACAAGACACCTGCTTCTTGCGCTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: QSLCVPRGISGI*GTRHLLLALLH
Trigger: GTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp CTGTTGAGTCCTGACCTCTCCTTTCCTGGATGGCCCTaGTTGGGCACTTTTCACTCTTCTGGTTGTGGTTGC +
Preference number: 3 (lower is better)
Translates to: LLSPDLSFPGWP*LGTFHSSGCGC
Trigger: GCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp AGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTaGAATCTGAGGTACAAGACACCTGCTTCTTGCGCT +
Preference number: 3 (lower is better)
Translates to: RQAKPVCAKGDL*NLRYKTPASCA
Trigger: AGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACATTCTGCAGGTCTTCTTaGGGGTCTTCCTCCAGTCTG +
Preference number: 3 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTFCRSS*GSSSSL
Trigger: CAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAA...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp GGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTaGGCCGAGTACACAGCAAGAGGACTGTTGAGTCCT +
Preference number: 3 (lower is better)
Translates to: GQETCFATLCED*AEYTARGLLSP
Trigger: AGGACTCAACAGTCCTCTTGCTGTGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp ATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCTaGCCACGGACAACTTGGGCTCCACTTTGCCCAGCT +
Preference number: 3 (lower is better)
Translates to: MRKRHHLLLSSC*PRTTWAPLCPA
Trigger: AGCTGGGCAAAGTGGAGCCCAAGTTGTCCGTGGTCAGCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp GGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTTaGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGGAC +
Preference number: 3 (lower is better)
Translates to: GCETIWNSAGLL*GLPPVWGFRTD
Trigger: GTCCGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTACCTGGATGGCCCTGGTaGGGCACTTTTCACTCTTCT +
Preference number: 3 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLPGWPW*GTFHSS
Trigger: AGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGG...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR TCA 72 bp GCAAGTTCAATGTCCAGGAACAACTTGGGCCAGCAGTaGACCAGGCTGCCATTTTGTGGCCAGAATGGACAT +
Preference number: 3 (lower is better)
Translates to: ASSMSRNNLGQQ*TRLPFCGQNGH
Trigger: ATGTCCATTCTGGCCACAAAATGGCAGCCTGGTTCACTGCTGGCCCAAGTTGTTCCTGGACATTGAACTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp CTCTTCTGGTTGTGGTTGCGAAACAATCTGGAATTCTaGAGGTCTTCTTTGGGGTCTTCCTCCAGTCTGGGG +
Preference number: 3 (lower is better)
Translates to: LFWLWLRNNLEF*RSSLGSSSSLG
Trigger: CCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp CCCCCAAAGAGAGTAAACCTCAGTCAAGTTGTCCATTaGACTCATGGCTTTGCAGGTTCTCGCTGCTCTAGG +
Preference number: 3 (lower is better)
Translates to: PPKRVNLSQVVH*THGFAGSRCSR
Trigger: CCTAGAGCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTACTCTCTTTGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp TCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTaGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: SWMALVGHFSLF*LWLRNNLEFCR
Trigger: CCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp GAACACAGGGCAAAGAAGCACAGGAGAGGCGAAGATTaGGGACAACTAGAGTTGGAGACAAAGGTGACCAGT +
Preference number: 3 (lower is better)
Translates to: EHRAKKHRRGED*GQLELETKVTS
Trigger: ACTGGTCACCTTTGTCTCCAACTCTAGTTGTCCCCAATCTTCGCCTCTCCTGTGCTTCTTTGCCCTGTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp AATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTAAAGTCACCTGGATGGCCCTGGTaGGGCACTTTTCACTCTTCT +
Preference number: 3 (lower is better)
Translates to: NAFRSLVGADHSGIGVKSPGWPW*GTFHSS
Trigger: AGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGG...TGACTTTACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTAACAGCAAGAGGACTGTaGAGTCCTGACCTCTCCTTT +
Preference number: 3 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLTARGL*SPDLSF
Trigger: AAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTGT...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAACAGCAAGAGGACTGTaGAGTCCTGACCTCTCCTTT +
Preference number: 3 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTTARGL*SPDLSF
Trigger: AAAGGAGAGGTCAGGACTCAACAGTCCTCTTGCTGT...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCGCCAAGAGACTTGCTTaGCAACTTTGTGCGAGGACT +
Preference number: 3 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCAKRLA*QLCART
Trigger: AGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGC...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp AGTGCCATTTACAAGAACAGGCCAAGAGACTTGCTTTaGAACTTTGTGCGAGGACTGAGCCGAGTACACAGC +
Preference number: 3 (lower is better)
Translates to: SAIYKNRPRDLL*NFVRGLSRVHS
Trigger: GCTGTGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTCTTGTAAATGGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR GCA 72 bp CCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTTaGGAAACAATCTGGAATTCTGCAGGTCTTCTTTGG +
Preference number: 3 (lower is better)
Translates to: PWLGTFHSSGCG*ETIWNSAGLLW
Trigger: CCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp ATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTaGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCT +
Preference number: 3 (lower is better)
Translates to: MALVGHFSLFWL*LRNNLEFCRSS
Trigger: AGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp TGTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATaGCGAGTACATATTTCTTGGTGTCATCCTGCTCGT +
Preference number: 3 (lower is better)
Translates to: CRFPFQALLLEI*RVHISWCHPAR
Trigger: ACGAGCAGGATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp GCTCTAGGTGTAGGTTCCCCTTTCAGGCCCTTCTGCTaGAAATATGGCGAGTACATATTTCTTGGTGTCATC +
Preference number: 3 (lower is better)
Translates to: ALGVGSPFRPFC*KYGEYIFLGVI
Trigger: GATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTACACCTAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp CTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTGGTGTCATCCGCCAAGAGACTTGCTTaGCAACTTTGTGCGAGGACT +
Preference number: 3 (lower is better)
Translates to: LSGPSAGNMASTYFLVSSAKRLA*QLCART
Trigger: AGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGC...GGATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAGCCAAGAGACTTGCTTaGCAACTTTGTGCGAGGACT +
Preference number: 3 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEAKRLA*QLCART
Trigger: AGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGC...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp AAAGTCTTCACATGGTTCCCTATCCTCCTGCCTTGGTaGGAATGGGCAAGGCAAACAACTGAAATGTCTAAC +
Preference number: 3 (lower is better)
Translates to: KVFTWFPILLPW*EWARQTTEMSN
Trigger: GTTAGACATTTCAGTTGTTTGCCTTGCCCATTCCCACCAAGGCAGGAGGATAGGGAACCATGTGAAGACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
3UTR CCA 72 bp ACTTTTCACTCTTCTGGTTGTGGTTGCGAAACAATCTaGAATTCTGCAGGTCTTCTTTGGGGTCTTCCTCCA +
Preference number: 3 (lower is better)
Translates to: TFHSSGCGCETI*NSAGLLWGLPP
Trigger: TGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR-3UTR CAA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTTTTTCACTCTTCTGGTaGTGGTTGCGAAACAATCTG +
Preference number: 3 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLFSLFW*WLRNNL
Trigger: CAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAA...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CCA 72 bp TATTTCTTGGTGTCATCCTGCTCGTTGTCTAGTAAGTaGCCTCAGAGCATTAAGAGTTTAGATCTAATGCCT +
Preference number: 3 (lower is better)
Translates to: YFLVSSCSLSSK*PQSIKSLDLMP
Trigger: AGGCATTAGATCTAAACTCTTAATGCTCTGAGGCCACTTACTAGACAACGAGCAGGATGACACCAAGAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCCAAGGACCGGTACTATaGGCATGGGCCAGCGGATGT +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCQGPVL*AWASGC
Trigger: ACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTG...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCTGTAGGCCGTGGTGGTaGGCAGCAAGTGTGTGCACA +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCCRPWW*AASVCT
Trigger: TGTGCACACACTTGCTGCCCACCACCACGGCCTACA...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCCCATGTAGGCCGTGGTaGTGGGCAGCAAGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: PQPKEALRASDSSCSCHIPCRPW*WAASVC
Trigger: GCACACACTTGCTGCCCACCACCACGGCCTACATGG...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAACTGGGACGGGCTGGGTaGCAGAGGAGGGTCACTGGA +
Preference number: 4 (lower is better)
Translates to: KTGKACVCQGGSLESEVQLGRAG*QRRVTG
Trigger: TCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAG...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCCCGGTACTATGGGCATaGGCCAGCGGATGTAGCTCG +
Preference number: 4 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFPVLWA*ASGCSS
Trigger: CGAGCTACATCCGCTGGCCCATGCCCATAGTACCGG...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGCTCCCTCATCTCTTGTaGGAAAGCTGTCATGTGCTG +
Preference number: 4 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLLPHLL*ESCHVL
Trigger: CAGCACATGACAGCTTTCCCACAAGAGATGAGGGAG...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCCTCTTGCTCCTGCTCTaGCTCCAGGACCCTAACGAT +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCLLLLL*LQDPND
Trigger: ATCGTTAGGGTCCTGGAGCCAGAGCAGGAGCAAGAG...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp CCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTaGGTCTCCCTGGTCAGGGCCACAAGCATTCAGACT +
Preference number: 4 (lower is better)
Translates to: PRGPQASLVLMC*VSLVRATSIQT
Trigger: AGTCTGAATGCTTGTGGCCCTGACCAGGGAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACACGTACTCGGGATCTGTaGGTGGAGGAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTRTRDL*VEEAST
Trigger: TGTGCTGGCCTCCTCCACGCACAGATCCCGAGTACG...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAGGGTACAGTTTCCCTaGTTGAGCTTGCGTATGGCC +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCRVQFP*LSLRMA
Trigger: GGCCATACGCAAGCTCAAGCAGGGAAACTGTACCCT...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GCAGGGCTACCCCCACAACCTAGAGGACACAGTCTCCTCAGAGGCCTCTGGCTGGAACTGAAAAGCATCTaGATAGCTGCCCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: AGLPPQPRGHSLLRGLWLELKSI*IAAQGT
Trigger: TGTACCCTGGGCAGCTATGCAGATGCTTTTCAGTTC...CAGCCAGAGGCCTCTGAGGAGACTGTGTCCTCTAGGTTGTGGGGGTAGCCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTAAGCCTGTACCCGCCTaGCTCTTCACCCTCACCCTC +
Preference number: 4 (lower is better)
Translates to: LSFPGWPWLGTFHSSGCGKPVPA*LFTLTL
Trigger: GAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTT...ACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCAGCTGCAGGCCCAGCTaGACATTCTCTCCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: GKACVCQGGSLESEVQDTSCRPS*TFSPRR
Trigger: CCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCT...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TGGAATTCTGCAGGTCTTCTTTGGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGCTCGGGATCTGTGCGTaGAGGAGGCCAGCACAGGAA +
Preference number: 4 (lower is better)
Translates to: WNSAGLLWGLPPVWGFRTLGICA*RRPAQE
Trigger: TTCCTGTGCTGGCCTCCTCCACGCACAGATCCCGAG...CGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCAAAGGGTTCTATGTCTaGCCGCTCCAGCGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: PQPKEALRASDSSCSCHIKGFYV*PLQRWQ
Trigger: TTGCCACCGCTGGAGCGGCCAGACATAGAACCCTTT...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp GGCCTGCTGCTGGCCCTCCAGCAGGATGACCTCACCTaGAAGAAAGAAAGAAATGCTGCCTCTGTGTGGCGA +
Preference number: 4 (lower is better)
Translates to: GLLLALQQDDLT*KKERNAASVWR
Trigger: TCGCCACACAGAGGCAGCATTTCTTTCTTTCTTCAAGGTGAGGTCATCCTGCTGGAGGGCCAGCAGCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
CDS-3UTR TCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCCTGGGACGGGCTGGGTaGCAGAGGAGGGTCACTGGA +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLLGRAG*QRRVTG
Trigger: TCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAG...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp TGGAATTCTGCAGGTCTTCTTTGGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGAAAGGAGATGAGAAATaGCACCCGTTCCGCGCCCCC +
Preference number: 4 (lower is better)
Translates to: WNSAGLLWGLPPVWGFRTKGDEK*HPFRAP
Trigger: GGGGGCGCGGAACGGGTGGCATTTCTCATCTCCTTT...CGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCAGGGTACAGTTTCCCTaGTTGAGCTTGCGTATGGCC +
Preference number: 4 (lower is better)
Translates to: PQPKEALRASDSSCSCHIRVQFP*LSLRMA
Trigger: GGCCATACGCAAGCTCAAGCAGGGAAACTGTACCCT...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAAAGCCTGTACCCGCCTaGCTCTTCACCCTCACCCTC +
Preference number: 4 (lower is better)
Translates to: KTGKACVCQGGSLESEVQKPVPA*LFTLTL
Trigger: GAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTT...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGCTGCAGGCCCAGCTaGACATTCTCTCCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTSCRPS*TFSPRR
Trigger: CCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCT...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACACCGGTACTATGGGCATaGGCCAGCGGATGTAGCTCG +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTPVLWA*ASGCSS
Trigger: CGAGCTACATCCGCTGGCCCATGCCCATAGTACCGG...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACACTCGGGATCTGTGCGTaGAGGAGGCCAGCACAGGAA +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTLGICA*RRPAQE
Trigger: TTCCTGTGCTGGCCTCCTCCACGCACAGATCCCGAG...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACAAAAGGAGATGAGAAATaGCACCCGTTCCGCGCCCCC +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTKGDEK*HPFRAP
Trigger: GGGGGCGCGGAACGGGTGGCATTTCTCATCTCCTTT...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCAAGCCTGTACCCGCCTaGCTCTTCACCCTCACCCTC +
Preference number: 4 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCKPVPA*LFTLTL
Trigger: GAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTT...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCGCGTGTATGTGCTCGTaGACATACACATGCTCGTGC +
Preference number: 4 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFACMCS*TYTCSC
Trigger: GCACGAGCATGTGTATGTGCACGAGCACATACACGC...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTTGGCTCCTTTAACATaGGGGAGTGCAGTTCCGGCT +
Preference number: 4 (lower is better)
Translates to: GKACVCQGGSLESEVQDTLAPLT*GSAVPA
Trigger: AGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAA...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTGGAAGCGCGGGAAGTTaGCATGCAAGGAGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: LSFPGWPWLGTFHSSGCGGSAGS*HARSFL
Trigger: AAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCC...ACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCACTCCCTCATCTCTTGTaGGAAAGCTGTCATGTGCTG +
Preference number: 4 (lower is better)
Translates to: ERFAPHVRTIGVLASNAALPHLL*ESCHVL
Trigger: CAGCACATGACAGCTTTCCCACAAGAGATGAGGGAG...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAATGTAGGCCGTGGTGGTaGGCAGCAAGTGTGTGCACA +
Preference number: 4 (lower is better)
Translates to: KTGKACVCQGGSLESEVQCRPWW*AASVCT
Trigger: TGTGCACACACTTGCTGCCCACCACCACGGCCTACA...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACACCATGTAGGCCGTGGTaGTGGGCAGCAAGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTPCRPW*WAASVC
Trigger: GCACACACTTGCTGCCCACCACCACGGCCTACATGG...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAAGTGGGACTCGATTCTaGCTCCTCTGTCTGCTAGAA +
Preference number: 4 (lower is better)
Translates to: ERFAPHVRTIGVLASNAASGTRF*LLCLLE
Trigger: TTCTAGCAGACAGAGGAGCCAGAATCGAGTCCCACT...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp GTAACACATTTGTTTCTCTGGAGCCTCCGGGTGTCTTaGGATCACCCTTGTACCCTGCATGCATCCCCACCC +
Preference number: 4 (lower is better)
Translates to: VTHLFLWSLRVS*DHPCTLHASPP
Trigger: GGGTGGGGATGCATGCAGGGTACAAGGGTGATCCAAAGACACCCGGAGGCTCCAGAGAAACAAATGTGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp CTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTAAGGAGCTTCCTTCCTaGGTGACTGAGATAGCCCAG +
Preference number: 4 (lower is better)
Translates to: LSFPGWPWLGTFHSSGCGKELPS*VTEIAQ
Trigger: CTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTT...ACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCAAAGGAGATGAGAAATaGCACCCGTTCCGCGCCCCC +
Preference number: 4 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCKGDEK*HPFRAP
Trigger: GGGGGCGCGGAACGGGTGGCATTTCTCATCTCCTTT...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTAGGGTACAGTTTCCCTaGTTGAGCTTGCGTATGGCC +
Preference number: 4 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASRVQFP*LSLRMA
Trigger: GGCCATACGCAAGCTCAAGCAGGGAAACTGTACCCT...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCCAAGGACCGGTACTATaGGCATGGGCCAGCGGATGT +
Preference number: 4 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCQGPVL*AWASGC
Trigger: ACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTG...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACACAAGGACCGGTACTATaGGCATGGGCCAGCGGATGT +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTQGPVL*AWASGC
Trigger: ACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTG...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCCTCCCTCATCTCTTGTaGGAAAGCTGTCATGTGCTG +
Preference number: 4 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFLPHLL*ESCHVL
Trigger: CAGCACATGACAGCTTTCCCACAAGAGATGAGGGAG...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACACTCTTGCTCCTGCTCTaGCTCCAGGACCCTAACGAT +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTLLLLL*LQDPND
Trigger: ATCGTTAGGGTCCTGGAGCCAGAGCAGGAGCAAGAG...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCCCATGTAGGCCGTGGTaGTGGGCAGCAAGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLPCRPW*WAASVC
Trigger: GCACACACTTGCTGCCCACCACCACGGCCTACATGG...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp TTGAGTCCTGACCTCTCCTTTCCTGGATGGCCCTGGTaGGGCACTTTTCACTCTTCTGGTTGTGGTTGCGAA +
Preference number: 4 (lower is better)
Translates to: LSPDLSFPGWPW*GTFHSSGCGCE
Trigger: TTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAGGTCAGGACTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCCCTCGTGATCTGCTATaGAAGTCTCTAGCTGCATCA +
Preference number: 4 (lower is better)
Translates to: GKACVCQGGSLESEVQDTPRDLL*KSLAAS
Trigger: TGATGCAGCTAGAGACTTTCATAGCAGATCACGAGG...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACAAAGGAGCTTCCTTCCTaGGTGACTGAGATAGCCCAG +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTKELPS*VTEIAQ
Trigger: CTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTT...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTCGTACTCGGGATCTGTaGGTGGAGGAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLRTRDL*VEEAST
Trigger: TGTGCTGGCCTCCTCCACGCACAGATCCCGAGTACG...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTAAGCATCTGCATAGCTaGCCAGGGTACAGTTTCCCT +
Preference number: 4 (lower is better)
Translates to: LSFPGWPWLGTFHSSGCGKHLHS*PGYSFP
Trigger: AGGGAAACTGTACCCTGGGCAGCTATGCAGATGCTT...ACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp TGGAATTCTGCAGGTCTTCTTTGGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGTCGTGCACATACACATaGTCGTGCTCTATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: WNSAGLLWGLPPVWGFRTSCTYT*SCSISS
Trigger: GGAGGAGATAGAGCACGAGCATGTGTATGTGCACGA...CGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTCTCCTTTCCTGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTTGTGGTACATGGGCGTGTATGTaGTCGTGCACATACACATGC +
Preference number: 4 (lower is better)
Translates to: LSFPGWPWLGTFHSSGCGTWACM*SCTYTC
Trigger: GCATGTGTATGTGCACGAGCACATACACGCCCATGT...ACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCAGGAAAGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTACATGGGCGTGTATGTaGTCGTGCACATACACATGC +
Preference number: 4 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASTWACM*SCTYTC
Trigger: GCATGTGTATGTGCACGAGCACATACACGCCCATGT...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCAGCTGCAGGCCCAGCTaGACATTCTCTCCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLSCRPS*TFSPRR
Trigger: CCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCT...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGATCTAATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTACTCGGGATCTGTGCGTaGAGGAGGCCAGCACAGGAA +
Preference number: 4 (lower is better)
Translates to: RSNAFRSLVGADHSGIGVLGICA*RRPAQE
Trigger: TTCCTGTGCTGGCCTCCTCCACGCACAGATCCCGAG...TACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATTAGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TACTTCCCACTGCAGCAGCAGTATTTTCCTGGACCCAAAAGTGAACAGCAGGTCGGAAGCGCGGGAAGTTaGCATGCAAGGAGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: YFPLQQQYFPGPKSEQQVGSAGS*HARSFL
Trigger: AAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCC...GACCTGCTGTTCACTTTTGGGTCCAGGAAAATACTGCTGCTGCAGTGGGAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCCCACGCGTGAGGGGATaGGGCCACAGAATTCCTTAC +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLPRVRG*GHRIPY
Trigger: GTAAGGAATTCTGTGGCCCCATCCCCTCACGCGTGG...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCTTGAGAAATTGGTTTTaGAGGCGACAGTCATCCCAA +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCLRNWF*RRQSSQ
Trigger: TTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAA...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAAGCCTTTGAGAAATTaGTTTTGGAGGCGACAGTCA +
Preference number: 4 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCKPLRN*FWRRQS
Trigger: TGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTT...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAAAGGCCCTCCAGAAGTaGGACTCGATTCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTKALQK*DSILAP
Trigger: AGGAGCCAGAATCGAGTCCCACTTCTGGAGGGCCTT...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTAAAGGCCCTCCAGAAGTaGGACTCGATTCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLKALQK*DSILAP
Trigger: AGGAGCCAGAATCGAGTCCCACTTCTGGAGGGCCTT...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTGGGATCAGTCTCATTaGGCAGGAACTCAAAGTTCT +
Preference number: 4 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFWDQSH*AGTQSS
Trigger: AGAACTTTGAGTTCCTGCTCAATGAGACTGATCCCA...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAAAGCATCTGCATAGCTaGCCAGGGTACAGTTTCCCT +
Preference number: 4 (lower is better)
Translates to: KTGKACVCQGGSLESEVQKHLHS*PGYSFP
Trigger: AGGGAAACTGTACCCTGGGCAGCTATGCAGATGCTT...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAGAACTGAAAAGCATCTaGATAGCTGCCCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTELKSI*IAAQGT
Trigger: TGTACCCTGGGCAGCTATGCAGATGCTTTTCAGTTC...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp GAACAGGCCAAGAGACTTGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTACATCGTGCACATACACATaGTCGTGCTCTATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EQAKRLALQLCARTEPSTSCTYT*SCSISS
Trigger: GGAGGAGATAGAGCACGAGCATGTGTATGTGCACGA...TGTACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAGCGTGTATGTGCTCGTaGACATACACATGCTCGTGC +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTACMCS*TYTCSC
Trigger: GCACGAGCATGTGTATGTGCACGAGCACATACACGC...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCAAAGGGTTCTATGTCTaGCCGCTCCAGCGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLKGFYV*PLQRWQ
Trigger: TTGCCACCGCTGGAGCGGCCAGACATAGAACCCTTT...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AGATCTAATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTACCACGCGTGAGGGGATaGGGCCACAGAATTCCTTAC +
Preference number: 4 (lower is better)
Translates to: RSNAFRSLVGADHSGIGVPRVRG*GHRIPY
Trigger: GTAAGGAATTCTGTGGCCCCATCCCCTCACGCGTGG...TACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATTAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GTTAAAGGAAGTTCAAGGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTAAGCCTTTGAGAAATTaGTTTTGGAGGCGACAGTCA +
Preference number: 4 (lower is better)
Translates to: VKGSSRPLCPQRPTGQFSKPLRN*FWRRQS
Trigger: TGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTT...ACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCCTTGAACTTCCTTTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCTGTAGGCCGTGGTGGTaGGCAGCAAGTGTGTGCACA +
Preference number: 4 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCCRPWW*AASVCT
Trigger: TGTGCACACACTTGCTGCCCACCACCACGGCCTACA...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp TGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCTTaGGGGTCTTCCTCCAGTCTGGGGCTTTCGTACGGA +
Preference number: 4 (lower is better)
Translates to: WLRNNLEFCRSS*GSSSSLGLSYG
Trigger: TCCGTACGAAAGCCCCAGACTGGAGGAAGACCCCAAAGAAGACCTGCAGAATTCCAGATTGTTTCGCAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp AGAACACAGGGCAAAGAAGCACAGGAGAGGCGAAGATaGGGGACAACTAGAGTTGGAGACAAAGGTGACCAG +
Preference number: 4 (lower is better)
Translates to: RTQGKEAQERRR*GTTRVGDKGDQ
Trigger: CTGGTCACCTTTGTCTCCAACTCTAGTTGTCCCCAATCTTCGCCTCTCCTGTGCTTCTTTGCCCTGTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAACCTCGTGATCTGCTATaGAAGTCTCTAGCTGCATCA +
Preference number: 4 (lower is better)
Translates to: KTGKACVCQGGSLESEVQPRDLL*KSLAAS
Trigger: TGATGCAGCTAGAGACTTTCATAGCAGATCACGAGG...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCACTTTCCTTTCTATCTTaGCACACTCAAGAATCAGCT +
Preference number: 4 (lower is better)
Translates to: ERFAPHVRTIGVLASNAALSFLS*HTQESA
Trigger: AGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAG...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCGCGTGTATGTGCTCGTaGACATACACATGCTCGTGC +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLACMCS*TYTCSC
Trigger: GCACGAGCATGTGTATGTGCACGAGCACATACACGC...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp TACTTCCCACTGCAGCAGCAGTATTTTCCTGGACCCAAAAGTGAACAGCAGGTCACATGGGCGTGTATGTaGTCGTGCACATACACATGC +
Preference number: 4 (lower is better)
Translates to: YFPLQQQYFPGPKSEQQVTWACM*SCTYTC
Trigger: GCATGTGTATGTGCACGAGCACATACACGCCCATGT...GACCTGCTGTTCACTTTTGGGTCCAGGAAAATACTGCTGCTGCAGTGGGAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTAAAGGGTTCTATGTCTaGCCGCTCCAGCGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLKGFYV*PLQRWQ
Trigger: TTGCCACCGCTGGAGCGGCCAGACATAGAACCCTTT...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTGGTGTCATCCGGAAGCGCGGGAAGTTaGCATGCAAGGAGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: LSGPSAGNMASTYFLVSSGSAGS*HARSFL
Trigger: AAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCC...GGATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAACCACGCGTGAGGGGATaGGGCCACAGAATTCCTTAC +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEPRVRG*GHRIPY
Trigger: GTAAGGAATTCTGTGGCCCCATCCCCTCACGCGTGG...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTTGAGAAATTGGTTTTaGAGGCGACAGTCATCCCAA +
Preference number: 4 (lower is better)
Translates to: GKACVCQGGSLESEVQDTLRNWF*RRQSSQ
Trigger: TTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAA...GGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp TGGATGGCCCTGGTTGGGCACTTTTCACTCTTCTGGTaGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: WMALVGHFSLFW*WLRNNLEFCRS
Trigger: AGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAGTGCCCAACCAGGGCCATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp GTGACCAGTGCCATTTACAAGAACAGGCCAAGAGACTaGCTTTGCAACTTTGTGCGAGGACTGAGCCGAGTA +
Preference number: 4 (lower is better)
Translates to: VTSAIYKNRPRD*LCNFVRGLSRV
Trigger: TACTCGGCTCAGTCCTCGCACAAAGTTGCAAAGCAAGTCTCTTGGCCTGTTCTTGTAAATGGCACTGGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACATTTCTGACAAGCCTTTaGGAAATTGGTTTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: GGSLESEVQDTCFLRFSTFLTSL*EIGFGG
Trigger: GCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAA...TGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTAAAGTCATTGGCTCCTTTAACATaGGGGAGTGCAGTTCCGGCT +
Preference number: 4 (lower is better)
Translates to: NAFRSLVGADHSGIGVKSLAPLT*GSAVPA
Trigger: AGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAA...TGACTTTACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAAAGGCCCTCCAGAAGTaGGACTCGATTCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEKALQK*DSILAP
Trigger: AGGAGCCAGAATCGAGTCCCACTTCTGGAGGGCCTT...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTATGGGATCAGTCTCATTaGGCAGGAACTCAAAGTTCT +
Preference number: 4 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLWDQSH*AGTQSS
Trigger: AGAACTTTGAGTTCCTGCTCAATGAGACTGATCCCA...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCTGGGATCAGTCTCATTaGGCAGGAACTCAAAGTTCT +
Preference number: 4 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCWDQSH*AGTQSS
Trigger: AGAACTTTGAGTTCCTGCTCAATGAGACTGATCCCA...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAAAGGAGCTTCCTTCCTaGGTGACTGAGATAGCCCAG +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEKELPS*VTEIAQ
Trigger: CTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTT...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp CTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTGGTGTCATCCCCTCGTGATCTGCTATaGAAGTCTCTAGCTGCATCA +
Preference number: 4 (lower is better)
Translates to: LSGPSAGNMASTYFLVSSPRDLL*KSLAAS
Trigger: TGATGCAGCTAGAGACTTTCATAGCAGATCACGAGG...GGATGACACCAAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACATTTCTGACAAGCCTTTaGGAAATTGGTTTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTFLTSL*EIGFGG
Trigger: GCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAA...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAATGAAAGTCTCTAGCTaGATCAGAAATTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTMKVSS*IRNSAR
Trigger: CCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCAT...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAAAGCATCTGCATAGCTaGCCAGGGTACAGTTTCCCT +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEKHLHS*PGYSFP
Trigger: AGGGAAACTGTACCCTGGGCAGCTATGCAGATGCTT...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp AGATCTAATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTAACATACACATGCTCGTaGTCTATCTCCTCCCTCTCT +
Preference number: 4 (lower is better)
Translates to: RSNAFRSLVGADHSGIGVTYTCS*SISSLS
Trigger: AGAGAGGGAGGAGATAGAGCACGAGCATGTGTATGT...TACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATTAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAATCGTGCACATACACATaGTCGTGCTCTATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWESCTYT*SCSISS
Trigger: GGAGGAGATAGAGCACGAGCATGTGTATGTGCACGA...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTTGAGAAATTGGTTTTaGAGGCGACAGTCATCCCAA +
Preference number: 4 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSLRNWF*RRQSSQ
Trigger: TTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAA...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCAAGCCTTTGAGAAATTaGTTTTGGAGGCGACAGTCA +
Preference number: 4 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCKPLRN*FWRRQS
Trigger: TGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTT...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTTTTCACTCTTCTGGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCAGTGGGACTCGATTCTaGCTCCTCTGTCTGCTAGAA +
Preference number: 4 (lower is better)
Translates to: LFTLLVVVAKQSGILQVFSGTRF*LLCLLE
Trigger: TTCTAGCAGACAGAGGAGCCAGAATCGAGTCCCACT...GAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAAGTGGGACTCGATTCTaGCTCCTCTGTCTGCTAGAA +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWESGTRF*LLCLLE
Trigger: TTCTAGCAGACAGAGGAGCCAGAATCGAGTCCCACT...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
3UTR CAA 72 bp TGTGGCGAGGTTCTGAATGGTCGGGAGGAAGCTATTTaGTCCTTATGGCATTCACTACTTCCCATATTTCCC +
Preference number: 4 (lower is better)
Translates to: CGEVLNGREEAI*SLWHSLLPIFP
Trigger: GGGAAATATGGGAAGTAGTGAATGCCATAAGGACAAAATAGCTTCCTCCCGACCATTCAGAACCTCGCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113631.2
CDS-3UTR TCA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACACTTTCCTTTCTATCTTaGCACACTCAAGAATCAGCT +
Preference number: 4 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTLSFLS*HTQESA
Trigger: AGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAG...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp CCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTCTAAGGACTCCTTACTTTCCTTTCTATCTTaGCACACTCAAGAATCAGCT +
Preference number: 4 (lower is better)
Translates to: PVSAEPALFSPFSSKDSLLSFLS*HTQESA
Trigger: AGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAG...TAAGGAGTCCTTAGAACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCATGAAAGTCTCTAGCTaGATCAGAAATTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLMKVSS*IRNSAR
Trigger: CCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCAT...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTTCGGACAGCTCCTGTAGCTGTCACATCACAACAAATATTGAAGAACTGGGAAGAACTGAAAAGCATCTaGATAGCTGCCCAGGGTACA +
Preference number: 4 (lower is better)
Translates to: LRTAPVAVTSQQILKNWEELKSI*IAAQGT
Trigger: TGTACCCTGGGCAGCTATGCAGATGCTTTTCAGTTC...TTCCCAGTTCTTCAATATTTGTTGTGATGTGACAGCTACAGGAGCTGTCCGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTTTTCACTCTTCTGGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCACATACACATGCTCGTaGTCTATCTCCTCCCTCTCT +
Preference number: 4 (lower is better)
Translates to: LFTLLVVVAKQSGILQVFTYTCS*SISSLS
Trigger: AGAGAGGGAGGAGATAGAGCACGAGCATGTGTATGT...GAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR TCA 90 bp AATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTAAAGTCATTTCTGACAAGCCTTTaGGAAATTGGTTTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: NAFRSLVGADHSGIGVKSFLTSL*EIGFGG
Trigger: GCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAA...TGACTTTACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR GCA 90 bp CTTTTCACTCTTCTGGTTGTGGTTGCGAAACAATCTGGAATTCTGCAGGTCTTCATGAAAGTCTCTAGCTaGATCAGAAATTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LFTLLVVVAKQSGILQVFMKVSS*IRNSAR
Trigger: CCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCAT...GAAGACCTGCAGAATTCCAGATTGTTTCGCAACCACAACCAGAAGAGTGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp AACTCAAAGGTTGGCTCCTTTAACATGGGGGAGTGCAGTTCCGGCTaGGACGGGCTGGGTGACAGAGGAGGGTCACTGGACCCGTCGGGG +
Preference number: 5 (lower is better)
Translates to: NSKVGSFNMGECSSG*DGLGDRGGSLDPSG
Trigger: CCCCGACGGGTCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAACCTTTGAGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp CCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGCTCATGTGCTTGGTCTCAGGAAGCGCGGGAAGTaGGCATGCAAGGAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: PLCPQRPTGQFSAHVLGLRKRGK*ACKELP
Trigger: AGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCCT...GAGACCAAGCACATGAGCACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp CAAGCGACCTGCATGGCGCATCAGTGGTGGCGGGCTGTAGAAGGATaGATTGGTCCCGGGAAGGCCCTCCAGAAGTGGGACTCGATTCTG +
Preference number: 5 (lower is better)
Translates to: QATCMAHQWWRAVEG*IGPGKALQKWDSIL
Trigger: CAGAATCGAGTCCCACTTCTGGAGGGCCTTCCCGGGACCAATTCATCCTTCTACAGCCCGCCACCACTGATGCGCCATGCAGGTCGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp GGTGGCAAAAGGAACTCAAAGGTTGGCTCCTTTAACATGGGGGAGTaGAGTTCCGGCTGGGACGGGCTGGGTGACAGAGGAGGGTCACTG +
Preference number: 5 (lower is better)
Translates to: GGKRNSKVGSFNMGE*SSGWDGLGDRGGSL
Trigger: CAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAACCTTTGAGTTCCTTTTGCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp AGGACAGGTTCGTCCATCACCATGAGCTCTCCATGTAGGCCGTGGTaGTGGGCAGCAAGTGTGTGCACATGGGCGTGTATGTGCTCGTGC +
Preference number: 5 (lower is better)
Translates to: RTGSSITMSSPCRPW*WAASVCTWACMCSC
Trigger: GCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGAGCTCATGGTGATGGACGAACCTGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp AAGGAATTAACCTCGGCCAAGGCTCTTCCGAGCTGCAGGCCCAGCTaGACATTCTCTCCTCGAAGGGCATTTAACTCCTCTCGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: KELTSAKALPSCRPS*TFSPRRAFNSSRRA
Trigger: GGCCCTGCGAGAGGAGTTAAATGCCCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCTCGGAAGAGCCTTGGCCGAGGTTAATTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp ACAGGTTCGTCCATCACCATGAGCTCTCCATGTAGGCCGTGGTGGTaGGCAGCAAGTGTGTGCACATGGGCGTGTATGTGCTCGTGCACA +
Preference number: 5 (lower is better)
Translates to: TGSSITMSSPCRPWW*AASVCTWACMCSCT
Trigger: TGTGCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGAGCTCATGGTGATGGACGAACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp ACAAGGACAGGTTCGTCCATCACCATGAGCTCTCCATGTAGGCCGTaGTGGTGGGCAGCAAGTGTGTGCACATGGGCGTGTATGTGCTCG +
Preference number: 5 (lower is better)
Translates to: TRTGSSITMSSPCRP*WWAASVCTWACMCS
Trigger: CGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGAGCTCATGGTGATGGACGAACCTGTCCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCAGGAAGCGCGGGAAGTaGGCATGCAAGGAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: PQPKEALRASDSSCSCHIRKRGK*ACKELP
Trigger: AGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCCT...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GAAGCCCCAGGAGTGTGCAGGAGGCAGTCGCCTCTTAAGCCACACTGGTTAACTAGGAAGCGCGGGAAGTaGGCATGCAAGGAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: EAPGVCRRQSPLKPHWLTRKRGK*ACKELP
Trigger: AGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCCT...AGTTAACCAGTGTGGCTTAAGAGGCGACTGCCTCCTGCACACTCCTGGGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp ACATTGCCCCGCAAGGAATTAACCTCGGCCAAGGCTCTTCCGAGCTaGAGGCCCAGCTGGACATTCTCTCCTCGAAGGGCATTTAACTCC +
Preference number: 5 (lower is better)
Translates to: TLPRKELTSAKALPS*RPSWTFSPRRAFNS
Trigger: GGAGTTAAATGCCCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCTCGGAAGAGCCTTGGCCGAGGTTAATTCCTTGCGGGGCAATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp TGGTGGTGGGCAGCAAGTGTGTGCACATGGGCGTGTATGTGCTCGTaGACATACACATGCTCGTGCTCTATCTCCTCCCTCTCTTGCTCC +
Preference number: 5 (lower is better)
Translates to: WWWAASVCTWACMCS*TYTCSCSISSLSCS
Trigger: GGAGCAAGAGAGGGAGGAGATAGAGCACGAGCATGTGTATGTGCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp AGCTCTCCATGTAGGCCGTGGTGGTGGGCAGCAAGTGTGTGCACATaGGCGTGTATGTGCTCGTGCACATACACATGCTCGTGCTCTATC +
Preference number: 5 (lower is better)
Translates to: SSPCRPWWWAASVCT*ACMCSCTYTCSCSI
Trigger: GATAGAGCACGAGCATGTGTATGTGCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTCACTCGAATTCGACCTaGAGTAGCTCGGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASHSNST*SSSVAP
Trigger: GGGGGCCACCGAGCTACTCAAGGTCGAATTCGAGTG...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp CCTCCTCCTCCTCTTCCTCCTCCTCAGGAGTGGGATCAGTCTCATTaGGCAGGAACTCAAAGTTCTCCTCGGCAAGGACCGGTACTATGG +
Preference number: 5 (lower is better)
Translates to: PPPPLPPPQEWDQSH*AGTQSSPRQGPVLW
Trigger: CCATAGTACCGGTCCTTGCCGAGGAGAACTTTGAGTTCCTGCTCAATGAGACTGATCCCACTCCTGAGGAGGAGGAAGAGGAGGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp CCACCCGTTCCGCGCCCCCAGGGAAGTGATCCTCGTGATCTGCTATaGAAGTCTCTAGCTGCATCAGAAATTCAGCCAGGTACACTGGGT +
Preference number: 5 (lower is better)
Translates to: PPVPRPQGSDPRDLL*KSLAASEIQPGTLG
Trigger: ACCCAGTGTACCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCATAGCAGATCACGAGGATCACTTCCCTGGGGGCGCGGAACGGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp GATGAATTGGTCCCGGGAAGGCCCTCCAGAAGTGGGACTCGATTCTaGCTCCTCTGTCTGCTAGAATGCATTACAGAAGGGGATACCCCC +
Preference number: 5 (lower is better)
Translates to: DELVPGRPSRSGTRF*LLCLLECITEGDTP
Trigger: GGGGGTATCCCCTTCTGTAATGCATTCTAGCAGACAGAGGAGCCAGAATCGAGTCCCACTTCTGGAGGGCCTTCCCGGGACCAATTCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCGGTCGGCCACTTCAGTaGACCATAAGAGTTCCTTTC +
Preference number: 5 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCGRPLQ*TIRVPF
Trigger: GAAAGGAACTCTTATGGTCAACTGAAGTGGCCGACC...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp GAAGCGCGGGAAGTTGGCATGCAAGGAGCTTCCTTCCTGAGTGACTaGGATAGCCCAGTCTCTCGCTTCCCCTGTGAAAAAGGAGATGAG +
Preference number: 5 (lower is better)
Translates to: EAREVGMQGASFLSD*DSPVSRFPCEKGDE
Trigger: CTCATCTCCTTTTTCACAGGGGAAGCGAGAGACTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp TCATCCAGGAAGCGCGGGAAGTTGGCATGCAAGGAGCTTCCTTCCTaGGTGACTGAGATAGCCCAGTCTCTCGCTTCCCCTGTGAAAAAG +
Preference number: 5 (lower is better)
Translates to: SSRKRGKLACKELPS*VTEIAQSLASPVKK
Trigger: CTTTTTCACAGGGGAAGCGAGAGACTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCCTGGATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp CCTCAACCCAAGGAGGCACTCAGAGCTTCGGACAGCTCCTGTAGCTGTCACATCGTACAGTTTCCCTGCTaGAGCTTGCGTATGGCCTTT +
Preference number: 5 (lower is better)
Translates to: PQPKEALRASDSSCSCHIVQFPC*SLRMAF
Trigger: AAAGGCCATACGCAAGCTCAAGCAGGGAAACTGTAC...GATGTGACAGCTACAGGAGCTGTCCGAAGCTCTGAGTGCCTCCTTGGGTTGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCCACTCGAATTCGACCTaGAGTAGCTCGGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCHSNST*SSSVAP
Trigger: GGGGGCCACCGAGCTACTCAAGGTCGAATTCGAGTG...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTTAAAGGAAGTTCAAGGCCCCTCTGCCCCCAGAGGCCCACAGGCCAGTTTAGTGTGGGATCAGTCTCATaGAGCAGGAACTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: VKGSSRPLCPQRPTGQFSVGSVS*SRNSKF
Trigger: GAACTTTGAGTTCCTGCTCAATGAGACTGATCCCAC...ACTAAACTGGCCTGTGGGCCTCTGGGGGCAGAGGGGCCTTGAACTTCCTTTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GGAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCTTTGAGAAATTGGTTTaGGAGGCGACAGTCATCCCA +
Preference number: 5 (lower is better)
Translates to: GEVCPSRENHRGVGQQCCFEKLV*EATVIP
Trigger: TGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAA...GCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCGGTCGGCCACTTCAGTaGACCATAAGAGTTCCTTTC +
Preference number: 5 (lower is better)
Translates to: ACVCQGGSLESEVQDTCFGRPLQ*TIRVPF
Trigger: GAAAGGAACTCTTATGGTCAACTGAAGTGGCCGACC...GAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp TGTCATGTGCTGCCTCTGATCCTTCAGATAAAGCCTGTACCCGCCTaGCTCTTCACCCTCACCCTCATTTTCACTGTAGAACTCCACACC +
Preference number: 5 (lower is better)
Translates to: CHVLPLILQIKPVPA*LFTLTLIFTVELHT
Trigger: GGTGTGGAGTTCTACAGTGAAAATGAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTTTATCTGAAGGATCAGAGGCAGCACATGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCCACTCGAATTCGACCTaGAGTAGCTCGGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCHSNST*SSSVAP
Trigger: GGGGGCCACCGAGCTACTCAAGGTCGAATTCGAGTG...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp CCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGACACCTGCTTCTGTGGGATCAGTCTCATaGAGCAGGAACTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: PVCAKGDLWNLRYKTPASVGSVS*SRNSKF
Trigger: GAACTTTGAGTTCCTGCTCAATGAGACTGATCCCAC...AGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AAGACAGGCAAAGCCTGTGTGTGCCAAGGGGGATCTCTGGAATCTGAGGTACAAGGTCGGCCACTTCAGTaGACCATAAGAGTTCCTTTC +
Preference number: 5 (lower is better)
Translates to: KTGKACVCQGGSLESEVQGRPLQ*TIRVPF
Trigger: GAAAGGAACTCTTATGGTCAACTGAAGTGGCCGACC...TTGTACCTCAGATTCCAGAGATCCCCCTTGGCACACACAGGCTTTGCCTGTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp ACAGTCATCCCAAGACAAGAACTGGGCCAAGAACTGAAAAGCATCTaGATAGCTGCCCAGGGTACAGTTTCCCTGCTTGAGCTTGCGTAT +
Preference number: 5 (lower is better)
Translates to: TVIPRQELGQELKSI*IAAQGTVSLLELAY
Trigger: ATACGCAAGCTCAAGCAGGGAAACTGTACCCTGGGCAGCTATGCAGATGCTTTTCAGTTCTTGGCCCAGTTCTTGTCTTGGGATGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 90 bp TGCACATACACATGCTCGTGCTCTATCTCCTCCCTCTCTTGCTCCTaGTCTGGCTCCAGGACCCTAACGATAACTTCATCTTCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: CTYTCSCSISSLSCS*SGSRTLTITSSSSS
Trigger: TGAAGAAGAAGATGAAGTTATCGTTAGGGTCCTGGAGCCAGAGCAGGAGCAAGAGAGGGAGGAGATAGAGCACGAGCATGTGTATGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCTTTCCCTGCTTGAGCTaGCGTATGGCCTTTTTAGCC +
Preference number: 5 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCFPCLS*RMAFLA
Trigger: GGCTAAAAAGGCCATACGCAAGCTCAAGCAGGGAAA...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GAGAGGTTTGCCCCTCACGTGAGAACCATAGGGGTGTTGGCCAGCAATGCTGCAATTTCTGACAAGCCTTaGAGAAATTGGTTTTGGAGG +
Preference number: 5 (lower is better)
Translates to: ERFAPHVRTIGVLASNAAISDKP*RNWFWR
Trigger: CCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAAT...TGCAGCATTGCTGGCCAACACCCCTATGGTTCTCACGTGAGGGGCAAACCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp TCTCTGGAATCTGAGGTACAAGACACCTGCTTCTTGCGCTTCTCCACAAGGACAAAAGGAACTCAAAGGTaGGCTCCTTTAACATGGGGG +
Preference number: 5 (lower is better)
Translates to: SLESEVQDTCFLRFSTRTKGTQR*APLTWG
Trigger: CCCCCATGTTAAAGGAGCCAACCTTTGAGTTCCTTT...TGTCCTTGTGGAGAAGCGCAAGAAGCAGGTGTCTTGTACCTCAGATTCCAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTAAAGGAACTCAAAGGTaGGCTCCTTTAACATGGGGG +
Preference number: 5 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSKGTQR*APLTWG
Trigger: CCCCCATGTTAAAGGAGCCAACCTTTGAGTTCCTTT...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AGCAAGATTCACTCCTTAGGATGTCAAACTGAACTATGGTGCTCCAGCCACCTCGTGGGATCAGTCTCATaGAGCAGGAACTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: SKIHSLGCQTELWCSSHLVGSVS*SRNSKF
Trigger: GAACTTTGAGTTCCTGCTCAATGAGACTGATCCCAC...GAGGTGGCTGGAGCACCATAGTTCAGTTTGACATCCTAAGGAGTGAATCTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCTTTCCCTGCTTGAGCTaGCGTATGGCCTTTTTAGCC +
Preference number: 5 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCFPCLS*RMAFLA
Trigger: GGCTAAAAAGGCCATACGCAAGCTCAAGCAGGGAAA...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTTTTCCCTGCTTGAGCTaGCGTATGGCCTTTTTAGCC +
Preference number: 5 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLFPCLS*RMAFLA
Trigger: GGCTAAAAAGGCCATACGCAAGCTCAAGCAGGGAAA...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTAGGTTCCCCTTTCAGGCCCTTCTGCTGGAAATATGGCGAGTACATATTTCTTGTACAGTTTCCCTGCTaGAGCTTGCGTATGGCCTTT +
Preference number: 5 (lower is better)
Translates to: VGSPFRPFCWKYGEYIFLVQFPC*SLRMAF
Trigger: AAAGGCCATACGCAAGCTCAAGCAGGGAAACTGTAC...AAGAAATATGTACTCGCCATATTTCCAGCAGAAGGGCCTGAAAGGGGAACCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp TCTCATCTTCAGACTCCAATGAGGAAGAGACACCATTTGCTGCTTTCTTCCTGCGTACAGTTTCCCTGCTaGAGCTTGCGTATGGCCTTT +
Preference number: 5 (lower is better)
Translates to: SHLQTPMRKRHHLLLSSCVQFPC*SLRMAF
Trigger: AAAGGCCATACGCAAGCTCAAGCAGGGAAACTGTAC...GCAGGAAGAAAGCAGCAAATGGTGTCTCTTCCTCATTGGAGTCTGAAGATGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AATGCTGCAATGAGTCCAGTCTCTGCAGAGCCAGCCCTGTTTTCTCCTTTCAGTTTTGAGAAATTGGTTTaGGAGGCGACAGTCATCCCA +
Preference number: 5 (lower is better)
Translates to: NAAMSPVSAEPALFSPFSFEKLV*EATVIP
Trigger: TGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAA...ACTGAAAGGAGAAAACAGGGCTGGCTCTGCAGAGACTGGACTCATTGCAGCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AGATCTAATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTATTTGAGAAATTGGTTTaGGAGGCGACAGTCATCCCA +
Preference number: 5 (lower is better)
Translates to: RSNAFRSLVGADHSGIGVFEKLV*EATVIP
Trigger: TGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAA...TACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATTAGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp GTAAACCTCAGTCAAGTTGTCCATTGCACTCATGGCTTTGCAGGTTCTCGCTGCATTTCTGACAAGCCTTaGAGAAATTGGTTTTGGAGG +
Preference number: 5 (lower is better)
Translates to: VNLSQVVHCTHGFAGSRCISDKP*RNWFWR
Trigger: CCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAAT...GCAGCGAGAACCTGCAAAGCCATGAGTGCAATGGACAACTTGACTGAGGTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 90 bp CATAAGAGTTCCTTTCGAAAAATTTCTGACAAGCCTTTGAGAAATTaGTTTTGGAGGCGACAGTCATCCCAAGACAAGAACTGGGCCAAG +
Preference number: 5 (lower is better)
Translates to: HKSSFRKISDKPLRN*FWRRQSSQDKNWAK
Trigger: CTTGGCCCAGTTCTTGTCTTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAATTTTTCGAAAGGAACTCTTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS-3UTR CAA 90 bp AATGCCTTTAGATCATTGGTTGGGGCAGATCACTCAGGCATTGGGGTAAAGTCAATTTCTGACAAGCCTTaGAGAAATTGGTTTTGGAGG +
Preference number: 5 (lower is better)
Translates to: NAFRSLVGADHSGIGVKSISDKP*RNWFWR
Trigger: CCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAAT...TGACTTTACCCCAATGCCTGAGTGATCTGCCCCAACCAATGATCTAAAGGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 90 bp CAGTTGACCATAAGAGTTCCTTTCGAAAAATTTCTGACAAGCCTTTaGGAAATTGGTTTTGGAGGCGACAGTCATCCCAAGACAAGAACT +
Preference number: 5 (lower is better)
Translates to: QLTIRVPFEKFLTSL*EIGFGGDSHPKTRT
Trigger: AGTTCTTGTCTTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAATTTTTCGAAAGGAACTCTTATGGTCAACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp CCGGCTGGGACGGGCTGGGTGACAGAGGAGGGTCACTaGACCCGTCGGGGTTGGTATAGTCCTGGACCACAT +
Preference number: 6 (lower is better)
Translates to: PAGTGWVTEEGH*TRRGWYSPGPH
Trigger: ATGTGGTCCAGGACTATACCAACCCCGACGGGTCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAGCCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp GTTGGCTCCTTTAACATGGGGGAGTGCAGTTCCGGCTaGGACGGGCTGGGTGACAGAGGAGGGTCACTGGAC +
Preference number: 6 (lower is better)
Translates to: VGSFNMGECSSG*DGLGDRGGSLD
Trigger: GTCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp TGCATGGCGCATCAGTGGTGGCGGGCTGTAGAAGGATaGATTGGTCCCGGGAAGGCCCTCCAGAAGTGGGAC +
Preference number: 6 (lower is better)
Translates to: CMAHQWWRAVEG*IGPGKALQKWD
Trigger: GTCCCACTTCTGGAGGGCCTTCCCGGGACCAATTCATCCTTCTACAGCCCGCCACCACTGATGCGCCATGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 72 bp CGCAAGGAATTAACCTCGGCCAAGGCTCTTCCGAGCTaGAGGCCCAGCTGGACATTCTCTCCTCGAAGGGCA +
Preference number: 6 (lower is better)
Translates to: RKELTSAKALPS*RPSWTFSPRRA
Trigger: TGCCCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCTCGGAAGAGCCTTGGCCGAGGTTAATTCCTTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp CAAAGTTCTCCTCGGCAAGGACCGGTACTATGGGCATaGGCCAGCGGATGTAGCTCGAGACATTGCCCCGCA +
Preference number: 6 (lower is better)
Translates to: QSSPRQGPVLWA*ASGCSSRHCPA
Trigger: TGCGGGGCAATGTCTCGAGCTACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTGCCGAGGAGAACTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp ACCTCGGCCAAGGCTCTTCCGAGCTGCAGGCCCAGCTaGACATTCTCTCCTCGAAGGGCATTTAACTCCTCT +
Preference number: 6 (lower is better)
Translates to: TSAKALPSCRPS*TFSPRRAFNSS
Trigger: AGAGGAGTTAAATGCCCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCTCGGAAGAGCCTTGGCCGAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp GTGGCAAAAGGAACTCAAAGGTTGGCTCCTTTAACATaGGGGAGTGCAGTTCCGGCTGGGACGGGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: VAKGTQRLAPLT*GSAVPAGTGWV
Trigger: CACCCAGCCCGTCCCAGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAACCTTTGAGTTCCTTTTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp TCGTCCATCACCATGAGCTCTCCATGTAGGCCGTGGTaGTGGGCAGCAAGTGTGTGCACATGGGCGTGTATG +
Preference number: 6 (lower is better)
Translates to: SSITMSSPCRPW*WAASVCTWACM
Trigger: CATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGAGCTCATGGTGATGGACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CAA 72 bp CTGGCCGCTCCAGCGGTGGCAAAAGGAACTCAAAGGTaGGCTCCTTTAACATGGGGGAGTGCAGTTCCGGCT +
Preference number: 6 (lower is better)
Translates to: LAAPAVAKGTQR*APLTWGSAVPA
Trigger: AGCCGGAACTGCACTCCCCCATGTTAAAGGAGCCAACCTTTGAGTTCCTTTTGCCACCGCTGGAGCGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp CTGCATCAGAAATTCAGCCAGGTACACTGGGTCGCCTaGAAAGGGTTCTATGTCTGGCCGCTCCAGCGGTGG +
Preference number: 6 (lower is better)
Translates to: LHQKFSQVHWVA*KGFYVWPLQRW
Trigger: CCACCGCTGGAGCGGCCAGACATAGAACCCTTTTCAGGCGACCCAGTGTACCTGGCTGAATTTCTGATGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp AAGCGCGGGAAGTTGGCATGCAAGGAGCTTCCTTCCTaGGTGACTGAGATAGCCCAGTCTCTCGCTTCCCCT +
Preference number: 6 (lower is better)
Translates to: KRGKLACKELPS*VTEIAQSLASP
Trigger: AGGGGAAGCGAGAGACTGGGCTATCTCAGTCACTCAGGAAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 72 bp TCTCCATGTAGGCCGTGGTGGTGGGCAGCAAGTGTGTaGACATGGGCGTGTATGTGCTCGTGCACATACACA +
Preference number: 6 (lower is better)
Translates to: SPCRPWWWAASV*TWACMCSCTYT
Trigger: TGTGTATGTGCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCACGGCCTACATGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp GGAACTCAAAGTTCTCCTCGGCAAGGACCGGTACTATaGGCATGGGCCAGCGGATGTAGCTCGAGACATTGC +
Preference number: 6 (lower is better)
Translates to: GTQSSPRQGPVL*AWASGCSSRHC
Trigger: GCAATGTCTCGAGCTACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTGCCGAGGAGAACTTTGAGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 72 bp TGCACATGGGCGTGTATGTGCTCGTGCACATACACATaGTCGTGCTCTATCTCCTCCCTCTCTTGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: CTWACMCSCTYT*SCSISSLSCSC
Trigger: GCAGGAGCAAGAGAGGGAGGAGATAGAGCACGAGCATGTGTATGTGCACGAGCACATACACGCCCATGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CAA 90 bp TCCTCCTCCTCCTCTTCCTCCTCCTCAGGAGTGGGATCAGTCTCATaGAGCAGGAACTCAAAGTTCTCCTCGGCAAGGACCGGTACTATG +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSGVGSVS*SRNSKFSSARTGTM
Trigger: CATAGTACCGGTCCTTGCCGAGGAGAACTTTGAGTTCCTGCTCAATGAGACTGATCCCACTCCTGAGGAGGAGGAAGAGGAGGAGGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp CCGCGCCCCCAGGGAAGTGATCCTCGTGATCTGCTATaGAAGTCTCTAGCTGCATCAGAAATTCAGCCAGGT +
Preference number: 6 (lower is better)
Translates to: PRPQGSDPRDLL*KSLAASEIQPG
Trigger: ACCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCATAGCAGATCACGAGGATCACTTCCCTGGGGGCGCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CAA 72 bp GAGGCTGTCTTGGGGACACGCACTTTCCTTTCTATCTaGACACACTCAAGAATCAGCTCATCCAGGTCGGCC +
Preference number: 6 (lower is better)
Translates to: EAVLGTRTFLSI*THSRISSSRSA
Trigger: GGCCGACCTGGATGAGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAGTGCGTGTCCCCAAGACAGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CAA 90 bp CCAGTGAGCGAGGCTGTCTTGGGGACACGCACTTTCCTTTCTATCTaGACACACTCAAGAATCAGCTCATCCAGGTCGGCCACTTCAGTT +
Preference number: 6 (lower is better)
Translates to: PVSEAVLGTRTFLSI*THSRISSSRSATSV
Trigger: AACTGAAGTGGCCGACCTGGATGAGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAGTGCGTGTCCCCAAGACAGCCTCGCTCACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp AGGCTGTCTTGGGGACACGCACTTTCCTTTCTATCTTaGCACACTCAAGAATCAGCTCATCCAGGTCGGCCA +
Preference number: 6 (lower is better)
Translates to: RLSWGHALSFLS*HTQESAHPGRP
Trigger: TGGCCGACCTGGATGAGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAGTGCGTGTCCCCAAGACAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 72 bp CCAAGACAAGAACTGGGCCAAGAACTGAAAAGCATCTaGATAGCTGCCCAGGGTACAGTTTCCCTGCTTGAG +
Preference number: 6 (lower is better)
Translates to: PRQELGQELKSI*IAAQGTVSLLE
Trigger: CTCAAGCAGGGAAACTGTACCCTGGGCAGCTATGCAGATGCTTTTCAGTTCTTGGCCCAGTTCTTGTCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS GCA 72 bp CTGCCTCTGATCCTTCAGATAAAGCCTGTACCCGCCTaGCTCTTCACCCTCACCCTCATTTTCACTGTAGAA +
Preference number: 6 (lower is better)
Translates to: LPLILQIKPVPA*LFTLTLIFTVE
Trigger: TTCTACAGTGAAAATGAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTTTATCTGAAGGATCAGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp GGTATAGTCCTGGACCACATTAATCAAAAGATCATCTaGGACGTACTCGGGATCTGTGCGTGGAGGAGGCCA +
Preference number: 6 (lower is better)
Translates to: GIVLDHINQKII*DVLGICAWRRP
Trigger: TGGCCTCCTCCACGCACAGATCCCGAGTACGTCTCAGATGATCTTTTGATTAATGTGGTCCAGGACTATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp CGAAAAATTTCTGACAAGCCTTTGAGAAATTGGTTTTaGAGGCGACAGTCATCCCAAGACAAGAACTGGGCC +
Preference number: 6 (lower is better)
Translates to: RKISDKPLRNWF*RRQSSQDKNWA
Trigger: GGCCCAGTTCTTGTCTTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAATTTTTCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CAA 72 bp ACTCAAGAATCAGCTCATCCAGGTCGGCCACTTCAGTaGACCATAAGAGTTCCTTTCGAAAAATTTCTGACA +
Preference number: 6 (lower is better)
Translates to: TQESAHPGRPLQ*TIRVPFEKFLT
Trigger: TGTCAGAAATTTTTCGAAAGGAACTCTTATGGTCAACTGAAGTGGCCGACCTGGATGAGCTGATTCTTGAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS CCA 72 bp TCCTTTCGAAAAATTTCTGACAAGCCTTTGAGAAATTaGTTTTGGAGGCGACAGTCATCCCAAGACAAGAAC +
Preference number: 6 (lower is better)
Translates to: SFRKISDKPLRN*FWRRQSSQDKN
Trigger: GTTCTTGTCTTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAATTTTTCGAAAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2
CDS TCA 72 bp ATAAGAGTTCCTTTCGAAAAATTTCTGACAAGCCTTTaGGAAATTGGTTTTGGAGGCGACAGTCATCCCAAG +
Preference number: 6 (lower is better)
Translates to: IRVPFEKFLTSL*EIGFGGDSHPK
Trigger: CTTGGGATGACTGTCGCCTCCAAAACCAATTTCTCAAAGGCTTGTCAGAAATTTTTCGAAAGGAACTCTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113631.2
ENSMUST00000119076.9
ENSMUST00000188731.2