Pregenerated sensors for RTL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071679Ensembl transcript IDs: ENSMUST00000096301.5, ENSMUST00000112843.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAACATATGACTAAGCTTGGATTGGCAGGTTCAAAGTATGTTAACTaGCAGAGAGGCTATTCCTCAAAGAAAGTTGCCAATAATGAATCA | + |
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Preference number: 1 (lower is better) Translates to: EHMTKLGLAGSKYVN*QRGYSSKKVANNES Trigger: TGATTCATTATTGGCAACTTTCTTTGAGGAATAGCCTCTCTGGCAGTTAACATACTTTGAACCTGCCAATCCAAGCTTAGTCATATGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR CCA 90 bp | GTTGCCAATAATGAATCATTATTCAGTTCAAATGACCATATAATTTaGTTTGCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: VANNESLFSSNDHII*FANSREVQHVGEAG Trigger: TCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGCAAACCAAATTATATGGTCATTTGAACTGAATAATGATTCATTATTGGCAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAAAGCTGTATAAATGGGTaGCAGAGATTTAGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: ANSREVQHVGEAGVFSWQSCING*QRFSSR Trigger: CCTGGAACTAAATCTCTGCCACCCATTTATACAGCT...TTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | TTGCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCTCAAACAACAACTTCTaGTTGTTCAAATTCCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: LPIAEKFSMLGKQESSAGSNNNF*LFKFLG Trigger: CCCCAGGAATTTGAACAACCAGAAGTTGTTGTTTGA...GCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAAACAGAATCCAGATTCTaGTCTCTTGATGACAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: ANSREVQHVGEAGVFSWQTESRF*SLDDKG Trigger: ACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGT...TTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | TTGCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCGGTTGTTCAAATTCCTaGGGATGTAAATGTTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: LPIAEKFSMLGKQESSAGGCSNS*GCKCFC Trigger: ACAAAAACATTTACATCCCCAGGAATTTGAACAACC...GCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR TCA 90 bp | AGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAAAGGTGAGAGGGTATaGGTTTACAAAGTGATTTCC | + |
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Preference number: 2 (lower is better) Translates to: SMLGKQESSAGNKIHSCIKGERV*VYKVIS Trigger: GGAAATCACTTTGTAAACTCATACCCTCTCACCTTT...TATACAGCTATGTATTTTGTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR GCA 90 bp | AATTCTCAAGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTGAGTGGCTATCAAAGTATGTTAACTaGCAGAGAGGCTATTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: NSQGTRPQCNGTSCSEWLSKYVN*QRGYSS Trigger: TGAGGAATAGCCTCTCTGGCAGTTAACATACTTTGA...TAGCCACTCAGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCTTGAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR-3UTR TCA 90 bp | GTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACAAAGGTGAGAGGGTATaGGTTTACAAAGTGATTTCC | + |
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Preference number: 2 (lower is better) Translates to: VESLLCKPLELLKLIGPNKGERV*VYKVIS Trigger: GGAAATCACTTTGTAAACTCATACCCTCTCACCTTT...GTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR GCA 90 bp | AATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGGTAGAGAGTCTTCTTTaGAAACCTTTAGAACTCTTG | + |
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Preference number: 2 (lower is better) Translates to: NQPRFHPLVGMWISVHCEVESLL*KPLELL Trigger: CAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC...CTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | ACGGGTAGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATCAAACAACAACTTCTaGTTGTTCAAATTCCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: TGRTESRFWSLDDKGIVGSNNNF*LFKFLG Trigger: CCCCAGGAATTTGAACAACCAGAAGTTGTTGTTTGA...TCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCTACCCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR GCA 90 bp | CGGGTAGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATGTAGAGAGTCTTCTTTaGAAACCTTTAGAACTCTTG | + |
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Preference number: 2 (lower is better) Translates to: RVEQNPDSGLLMTKVLLDVESLL*KPLELL Trigger: CAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC...ATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCTACCCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR GCA 90 bp | ACTAAGCACAATTCTCAAGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTATGTCTAAGAAGTTGTaGCTTTCTAGCACATCATTC | + |
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Preference number: 2 (lower is better) Translates to: TKHNSQGTRPQCNGTSCSMSKKL*LSSTSF Trigger: GAATGATGTGCTAGAAAGGCACAACTTCTTAGACAT...AGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCTTGAGAATTGTGCTTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTACAGAATCCAGATTCTaGTCTCTTGATGACAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: ESSAGNKIHSCINGWQRFTESRF*SLDDKG Trigger: ACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGT...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTACTCTTGAAGCTGATTaGTCCCAACTATTAAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: ESSAGNKIHSCINGWQRFTLEAD*SQLLSF Trigger: GAAACTTAATAGTTGGGACCAATCAGCTTCAAGAGT...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTATAAGCTATGGGATTTaGTCCAATAGAATCAACCAC | + |
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Preference number: 2 (lower is better) Translates to: ESSAGNKIHSCINGWQRFISYGI*SNRINH Trigger: GTGGTTGATTCTATTGGACCAAATCCCATAGCTTAT...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR CAA 90 bp | TATATATGTTCAAACCTAAAAGAGGAACATATGACTAAGCTTGGATaGGCAGGTTCAAAGTATGTTAACTGCCAGAGAGGCTATTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: YICSNLKEEHMTKLG*AGSKYVNCQRGYSS Trigger: TGAGGAATAGCCTCTCTGGCAGTTAACATACTTTGAACCTGCCAATCCAAGCTTAGTCATATGTTCCTCTTTTAGGTTTGAACATATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACTATTAAGTGGTTGTTCAAATTCCTaGGGATGTAAATGTTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SSLQTFRTLEADWSQLLSGCSNS*GCKCFC Trigger: ACAAAAACATTTACATCCCCAGGAATTTGAACAACC...ACTTAATAGTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTCCACGATTTCATCCTTaGGTAGGGATGTGGATCTCG | + |
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Preference number: 3 (lower is better) Translates to: ESSAGNKIHSCINGWQRFPRFHP*VGMWIS Trigger: CGAGATCCACATCCCTACCAAAGGATGAAATCGTGG...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | GTAGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGCCACGATTTCATCCTTaGGTAGGGATGTGGATCTCG | + |
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Preference number: 3 (lower is better) Translates to: VEQNPDSGLLMTKVLLDMPRFHP*VGMWIS Trigger: CGAGATCCACATCCCTACCAAAGGATGAAATCGTGG...CATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGAACAACAACTTCTGGTaGTTCAAATTCCTGGGGATG | + |
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Preference number: 3 (lower is better) Translates to: IESTTISSFGRDVDLGTLNNNFW*FKFLGM Trigger: CATCCCCAGGAATTTGAACAACCAGAAGTTGTTGTT...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTTTGGGCTCAGTCCTAGGCACATAAGCTATGGGATTTGGTCCAATAGAATCTGTAGAGAGTCTTCTTaGCAAACCTTTAGAACTCTT | + |
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Preference number: 3 (lower is better) Translates to: SFGLSPRHISYGIWSNRICRESS*QTFRTL Trigger: AAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTACA...GATTCTATTGGACCAAATCCCATAGCTTATGTGCCTAGGACTGAGCCCAAAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | AATTCTCAAGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTGAGTGGCTAATGACTAAGCTTGGATaGGCAGGTTCAAAGTATGTT | + |
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Preference number: 3 (lower is better) Translates to: NSQGTRPQCNGTSCSEWLMTKLG*AGSKYV Trigger: AACATACTTTGAACCTGCCAATCCAAGCTTAGTCAT...TAGCCACTCAGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCTTGAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR GCA 72 bp | ACTAAGCTTGGATTGGCAGGTTCAAAGTATGTTAACTaGCAGAGAGGCTATTCCTCAAAGAAAGTTGCCAAT | + |
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Preference number: 3 (lower is better) Translates to: TKLGLAGSKYVN*QRGYSSKKVAN Trigger: ATTGGCAACTTTCTTTGAGGAATAGCCTCTCTGGCAGTTAACATACTTTGAACCTGCCAATCCAAGCTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | GTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACGCCACAGCAACTCATTaGTATTTTGAAGTTTGTGAA | + |
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Preference number: 3 (lower is better) Translates to: VESLLCKPLELLKLIGPNATATH*YFEVCE Trigger: TTCACAAACTTCAAAATACAAATGAGTTGCTGTGGC...GTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGGCCACAGCAACTCATTaGTATTTTGAAGTTTGTGAA | + |
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Preference number: 3 (lower is better) Translates to: IESTTISSFGRDVDLGTLATATH*YFEVCE Trigger: TTCACAAACTTCAAAATACAAATGAGTTGCTGTGGC...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | AGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGGTAACAACAACTTCTGGTaGTTCAAATTCCTGGGGATG | + |
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Preference number: 3 (lower is better) Translates to: RTESRFWSLDDKGIVGYGNNNFW*FKFLGM Trigger: CATCCCCAGGAATTTGAACAACCAGAAGTTGTTGTT...ACCATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | AGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGGTAAACCTTTAGAACTCTaGAAGCTGATTGGTCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: RTESRFWSLDDKGIVGYGKPLEL*KLIGPN Trigger: GTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTT...ACCATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR-3UTR CAA 90 bp | TGGATGAAGAGATATTTCTTGGTGCTACAAGATGAGAGCAGTAAGGCTCTATCTTTGATGACAAAGGTATaGTTGGATATGGTGATGCCA | + |
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Preference number: 3 (lower is better) Translates to: WMKRYFLVLQDESSKALSLMTKV*LDMVMP Trigger: TGGCATCACCATATCCAACAATACCTTTGTCATCAA...AGATAGAGCCTTACTGCTCTCATCTTGTAGCACCAAGAAATATCTCTTCATCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR TCA 72 bp | AGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTaGGTGGCTATTAAGGAATATGAAATGACTGATTTC | + |
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Preference number: 3 (lower is better) Translates to: RNKTTVQWHFMF*VAIKEYEMTDF Trigger: GAAATCAGTCATTTCATATTCCTTAATAGCCACTCAGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR CCA 72 bp | TCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTaGCAGAGATTTAGTTCCAGGATGATTGTCATGTGT | + |
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Preference number: 3 (lower is better) Translates to: SAGNKIHSCING*QRFSSRMIVMC Trigger: ACACATGACAATCATCCTGGAACTAAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| 3UTR CCA 72 bp | AAGGAATATGAAATGACTGATTTCAGGAATTCATTATaGGGAAATACACCAGCACCAAGAAGCAATGAACAA | + |
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Preference number: 3 (lower is better) Translates to: KEYEMTDFRNSL*GNTPAPRSNEQ Trigger: TTGTTCATTGCTTCTTGGTGCTGGTGTATTTCCCCATAATGAATTCCTGAAATCAGTCATTTCATATTCCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| 3UTR TCA 72 bp | TCATTTATGAAGTACTGTGAATATATAGCAAGCTACTaGCAAAGGAACAAACTGCTTGTGAATGTAAGTAGG | + |
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Preference number: 3 (lower is better) Translates to: SFMKYCEYIASY*QRNKLLVNVSR Trigger: CCTACTTACATTCACAAGCAGTTTGTTCCTTTGTCAGTAGCTTGCTATATATTCACAGTACTTCATAAATGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | CCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACCTCTTTTGGCAGGAGTaGCAGGCAGGTGGGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: PIAEKFSMLGKQESSAGNLFWQE*QAGGLP Trigger: AGGGAGCCCACCTGCCTGTCACTCCTGCCAAAAGAG...GTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | CCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGGGTTTTCTCTTTTGGCAGGAGTaGCAGGCAGGTGGGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: PRFHPLVGMWISVHCEGFLFWQE*QAGGLP Trigger: AGGGAGCCCACCTGCCTGTCACTCCTGCCAAAAGAG...AAAACCCTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | GCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAAGCTGAATGCACTGAGTaGTCAAATCTGGTAGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ANSREVQHVGEAGVFSWQAECTE*SNLVGC Trigger: ACAACCTACCAGATTTGATCACTCAGTGCATTCAGC...TTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | CCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACGCAAACATTGGAACATaGCTTTCTGACTGTAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PIAEKFSMLGKQESSAGNANIGT*LSDCRS Trigger: GCTCCTACAGTCAGAAAGTCATGTTCCAATGTTTGC...GTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR GCA 90 bp | CCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACAGGGCAGGTACAACTTaGCCTGTTATAGGAGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: PIAEKFSMLGKQESSAGNRAGTT*PVIGGL Trigger: TAAACCTCCTATAACAGGGCAAGTTGTACCTGCCCT...GTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR CCA 90 bp | CCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACTGGATGTTGAACTTGTaGCTGCAGAATCAGATTGCC | + |
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Preference number: 4 (lower is better) Translates to: PIAEKFSMLGKQESSAGNWMLNL*LQNQIA Trigger: GGCAATCTGATTCTGCAGCCACAAGTTCAACATCCA...GTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | AATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGCAAGGCAATCTCTTGTaGAGTGACCAGCCTGGTTAC | + |
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Preference number: 4 (lower is better) Translates to: NQPRFHPLVGMWISVHCEQGNLL*SDQPGY Trigger: GTAACCAGGCTGGTCACTTCACAAGAGATTGCCTTG...CTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | GTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACCAAGGCAATCTCTTGTaGAGTGACCAGCCTGGTTAC | + |
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Preference number: 4 (lower is better) Translates to: VESLLCKPLELLKLIGPNQGNLL*SDQPGY Trigger: GTAACCAGGCTGGTCACTTCACAAGAGATTGCCTTG...GTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | AGAAACAGATCAATAGACGATAAAAGCTTTGGGCTCAGTCCTAGGCACATAAGCGTGATTTCTTCATTCTaGGTGGGGTCAGCTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RNRSIDDKSFGLSPRHISVISSF*VGSACP Trigger: TGGACAAGCTGACCCCACTCAGAATGAAGAAATCAC...GCTTATGTGCCTAGGACTGAGCCCAAAGCTTTTATCGTCTATTGATCTGTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR CCA 90 bp | AGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACAAAATACATAGCTGTATATGGATGTTGAACTTGTaGCTGCAGAATCAGATTGCC | + |
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Preference number: 4 (lower is better) Translates to: SMLGKQESSAGNKIHSCIWMLNL*LQNQIA Trigger: GGCAATCTGATTCTGCAGCCACAAGTTCAACATCCA...TATACAGCTATGTATTTTGTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTCATCAGTTGGATGTTaGACTTGTGGCTGCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: IESTTISSFGRDVDLGTLSSVGC*TCGCRI Trigger: GATTCTGCAGCCACAAGTTCAACATCCAACTGATGA...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS-3UTR TCA 90 bp | GTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACTCATCAGTTGGATGTTaGACTTGTGGCTGCAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: VESLLCKPLELLKLIGPNSSVGC*TCGCRI Trigger: GATTCTGCAGCCACAAGTTCAACATCCAACTGATGA...GTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR GCA 90 bp | ACTAAGCACAATTCTCAAGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTAGGGCAGGTACAACTTaGCCTGTTATAGGAGGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: TKHNSQGTRPQCNGTSCSRAGTT*PVIGGL Trigger: TAAACCTCCTATAACAGGGCAAGTTGTACCTGCCCT...AGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCTTGAGAATTGTGCTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
||
| CDS-3UTR TCA 90 bp | AGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGGTGTGATTTCTTCATTCTaGGTGGGGTCAGCTTGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: RTESRFWSLDDKGIVGYGVISSF*VGSACP Trigger: TGGACAAGCTGACCCCACTCAGAATGAAGAAATCAC...ACCATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR TCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTGCTGAATGCACTGAGTaGTCAAATCTGGTAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: ESSAGNKIHSCINGWQRFAECTE*SNLVGC Trigger: ACAACCTACCAGATTTGATCACTCAGTGCATTCAGC...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR GCA 90 bp | AGAAACAGATCAATAGACGATAAAAGCTTTGGGCTCAGTCCTAGGCACATAAGCGACTCGGGCATTATCTaGAGGATTAGAAATATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RNRSIDDKSFGLSPRHISDSGII*RIRNIQ Trigger: CTGGATATTTCTAATCCTGCAGATAATGCCCGAGTC...GCTTATGTGCCTAGGACTGAGCCCAAAGCTTTTATCGTCTATTGATCTGTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR GCA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGGACTCGGGCATTATCTaGAGGATTAGAAATATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: IESTTISSFGRDVDLGTLDSGII*RIRNIQ Trigger: CTGGATATTTCTAATCCTGCAGATAATGCCCGAGTC...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR TCA 90 bp | TCATTATGGGGAAATACACCAGCACCAAGAAGCAATGAACAAAGAACTGGTAATGCAAACATTGGAACATaGCTTTCTGACTGTAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLWGNTPAPRSNEQRTGNANIGT*LSDCRS Trigger: GCTCCTACAGTCAGAAAGTCATGTTCCAATGTTTGC...ATTACCAGTTCTTTGTTCATTGCTTCTTGGTGCTGGTGTATTTCCCCATAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
||
| CDS-3UTR GCA 90 bp | AATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGTCACCAAATGATTGCTaGAACTCAAGAACAAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: NQPRFHPLVGMWISVHCESPNDC*NSRTKF Trigger: GAACTTTGTTCTTGAGTTGCAGCAATCATTTGGTGA...CTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTTTTCTTCATTCTGAGTaGGGTCAGCTTGTCCATTTT | + |
|
Preference number: 4 (lower is better) Translates to: ESSAGNKIHSCINGWQRFFLHSE*GQLVHF Trigger: AAAATGGACAAGCTGACCCCACTCAGAATGAAGAAA...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CCA 90 bp | AGAAACAGATCAATAGACGATAAAAGCTTTGGGCTCAGTCCTAGGCACATAAGCTTCAATAGATTATTCTaGGTAGACTCAGATAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: RNRSIDDKSFGLSPRHISFNRLF*VDSDRT Trigger: TGTCCTATCTGAGTCTACCCAGAATAATCTATTGAA...GCTTATGTGCCTAGGACTGAGCCCAAAGCTTTTATCGTCTATTGATCTGTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CCA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGACTGGTAATGATTTGTaGAAGCAAACATTGGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: IESTTISSFGRDVDLGTLTGNDL*KQTLEH Trigger: ATGTTCCAATGTTTGCTTCCACAAATCATTACCAGT...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR TCA 90 bp | AGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGGTTGTCCATTATATCTGTaGTTTCTTCATTCTGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RTESRFWSLDDKGIVGYGCPLYL*FLHSEW Trigger: CCACTCAGAATGAAGAAATCACAGATATAATGGACA...ACCATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CCA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTTTCAATAGATTATTCTaGGTAGACTCAGATAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: ESSAGNKIHSCINGWQRFFNRLF*VDSDRT Trigger: TGTCCTATCTGAGTCTACCCAGAATAATCTATTGAA...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CCA 90 bp | TGGATGAAGAGATATTTCTTGGTGCTACAAGATGAGAGCAGTAAGGCTCTATCTACTGGTAATGATTTGTaGAAGCAAACATTGGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: WMKRYFLVLQDESSKALSTGNDL*KQTLEH Trigger: ATGTTCCAATGTTTGCTTCCACAAATCATTACCAGT...AGATAGAGCCTTACTGCTCTCATCTTGTAGCACCAAGAAATATCTCTTCATCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
||
| 3UTR CAA 72 bp | ATGTTAACTGCCAGAGAGGCTATTCCTCAAAGAAAGTaGCCAATAATGAATCATTATTCAGTTCAAATGACC | + |
|
Preference number: 4 (lower is better) Translates to: MLTAREAIPQRK*PIMNHYSVQMT Trigger: GGTCATTTGAACTGAATAATGATTCATTATTGGCAACTTTCTTTGAGGAATAGCCTCTCTGGCAGTTAACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
||
| CDS GCA 90 bp | TGCTGCCGGGCTCTTTTGGCAGGAGTGACAGGCAGGTGGGCTCCCTaGAACTGTCTAGGCCCATCCTTTGGTAGTGGACGCACGGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: CCRALLAGVTGRWAP*NCLGPSFGSGRTGP Trigger: TGGCCCCGTGCGTCCACTACCAAAGGATGGGCCTAGACAGTTGCAGGGAGCCCACCTGCCTGTCACTCCTGCCAAAAGAGCCCGGCAGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS TCA 90 bp | TTTGACACTGGCTGGGTTACCATGAAACTGAGGAATATGGTCACCTaGGTAAGGACCAGACATCACTGGGGTATTCAGGGCAGGTACAAC | + |
|
Preference number: 5 (lower is better) Translates to: FDTGWVTMKLRNMVT*VRTRHHWGIQGRYN Trigger: GTTGTACCTGCCCTGAATACCCCAGTGATGTCTGGTCCTTACTCAGGTGACCATATTCCTCAGTTTCATGGTAACCCAGCCAGTGTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | GCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAATCCTGTGGAGAGATGTaGCTTTTGTCAACTGTAACA | + |
|
Preference number: 5 (lower is better) Translates to: ANSREVQHVGEAGVFSWQSCGEM*LLSTVT Trigger: TGTTACAGTTGACAAAAGCAACATCTCTCCACAGGA...TTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | CCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCAACTCGTTTCTTGTGTCATaGGTTCACCAAATGATTGCT | + |
|
Preference number: 5 (lower is better) Translates to: PIAEKFSMLGKQESSAGNSFLVS*VHQMIA Trigger: AGCAATCATTTGGTGAACCAATGACACAAGAAACGA...GTTGCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | TTGCCAATAGCCGAGAAGTTCAGCATGTTGGGGAAGCAGGAGTCTTCAGCTGGCGGAGAGATGTTGCTTTaGTCAACTGTAACATTCATT | + |
|
Preference number: 5 (lower is better) Translates to: LPIAEKFSMLGKQESSAGGEMLL*STVTFI Trigger: AATGAATGTTACAGTTGACAAAAGCAACATCTCTCC...GCCAGCTGAAGACTCCTGCTTCCCCAACATGCTGAACTTCTCGGCTATTGGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CCA 90 bp | TTGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTTGAACTTGTaGCTGCAGAATCAGATTGCCTCCTCTCAAAAAGGAAGTCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: LPCYRRFIISWMLNL*LQNQIASSQKGSLC Trigger: GCAGAGACTTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGGGCTGCAGAATCAGATaGCCTCCTCTCAAAAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: IESTTISSFGRDVDLGTLGCRIR*PPLKKE Trigger: TTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCC...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | CCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGGGTTTTATCATCAGTTGGATGTaGAACTTGTGGCTGCAGAAT | + |
|
Preference number: 5 (lower is better) Translates to: PRFHPLVGMWISVHCEGFIISWM*NLWLQN Trigger: ATTCTGCAGCCACAAGTTCAACATCCAACTGATGAT...AAAACCCTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | AATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGGTCAGCTTGTCCATTTaGGAACTGGTCTCTCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: NQPRFHPLVGMWISVHCEVSLSI*ELVSLI Trigger: AATCAGAGAGACCAGTTCCAAAATGGACAAGCTGAC...CTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS TCA 90 bp | GGTACAACTTGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTTaGACTTGTGGCTGCAGAATCAGATTGCCTCCTCTCAAAAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: GTTCPVIGGLSSVGC*TCGCRIRLPPLKKE Trigger: TTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAAGTTGTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | TGTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAAGGCTGCAGAATCAGATaGCCTCCTCTCAAAAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: CRESSLQTFRTLEADWSQGCRIR*PPLKKE Trigger: TTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCC...TTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | AGAAACAGATCAATAGACGATAAAAGCTTTGGGCTCAGTCCTAGGCACATAAGCTCCTGTGGAGAGATGTaGCTTTTGTCAACTGTAACA | + |
|
Preference number: 5 (lower is better) Translates to: RNRSIDDKSFGLSPRHISSCGEM*LLSTVT Trigger: TGTTACAGTTGACAAAAGCAACATCTCTCCACAGGA...GCTTATGTGCCTAGGACTGAGCCCAAAGCTTTTATCGTCTATTGATCTGTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | TGTAGAGAGTCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAAGTCAGCTTGTCCATTTaGGAACTGGTCTCTCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: CRESSLQTFRTLEADWSQVSLSI*ELVSLI Trigger: AATCAGAGAGACCAGTTCCAAAATGGACAAGCTGAC...TTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGACTCTCTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS GCA 90 bp | GTTTATCATCAGTTGGATGTTGAACTTGTGGCTGCAGAATCAGATTaGCTCCTCTCAAAAAGGAAGTCTCTGCATTTAAGTTTGGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VYHQLDVELVAAESD*LLSKRKSLHLSLVE Trigger: CTCTACCAAACTTAAATGCAGAGACTTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | AATTCTCAAGGAACAAGACCACAGTGCAATGGCACTTCATGTTCTGAGTGGCTATCTCTGCATTTAAGTTaGGTAGAGATTCTGTACACT | + |
|
Preference number: 5 (lower is better) Translates to: NSQGTRPQCNGTSCSEWLSLHLS*VEILYT Trigger: AGTGTACAGAATCTCTACCAAACTTAAATGCAGAGA...TAGCCACTCAGAACATGAAGTGCCATTGCACTGTGGTCTTGTTCCTTGAGAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | ATAGAATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGATTTGGAGCATGAAGTaGGAAATTAGTAGCATCCTG | + |
|
Preference number: 5 (lower is better) Translates to: IESTTISSFGRDVDLGTLIWSMK*EISSIL Trigger: CAGGATGCTACTAATTTCCAACTTCATGCTCCAAAT...CAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATTCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | AATCAACCACGATTTCATCCTTTGGTAGGGATGTGGATCTCGGTACATTGTGAGCACGATAACTCAAATTaGGAGCATGAAGTTGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: NQPRFHPLVGMWISVHCEHDNSN*EHEVGN Trigger: ATTTCCAACTTCATGCTCCAAATTTGAGTTATCGTG...CTCACAATGTACCGAGATCCACATCCCTACCAAAGGATGAAATCGTGGTTGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTTCGTTTCTTGTGTCATaGGTTCACCAAATGATTGCT | + |
|
Preference number: 5 (lower is better) Translates to: ESSAGNKIHSCINGWQRFSFLVS*VHQMIA Trigger: AGCAATCATTTGGTGAACCAATGACACAAGAAACGA...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | CGGGTAGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATCACGATAACTCAAATTaGGAGCATGAAGTTGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: RVEQNPDSGLLMTKVLLDHDNSN*EHEVGN Trigger: ATTTCCAACTTCATGCTCCAAATTTGAGTTATCGTG...ATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCTACCCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | GAGTCTTCAGCTGGCAACAAAATACATAGCTGTATAAATGGGTGGCAGAGATTTGGAGAGATGTTGCTTTaGTCAACTGTAACATTCATT | + |
|
Preference number: 5 (lower is better) Translates to: ESSAGNKIHSCINGWQRFGEMLL*STVTFI Trigger: AATGAATGTTACAGTTGACAAAAGCAACATCTCTCC...AAATCTCTGCCACCCATTTATACAGCTATGTATTTTGTTGCCAGCTGAAGACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | GTAGAACAGAATCCAGATTCTGGTCTCTTGATGACAAAGGTATTGTTGGATATGTCTCTGCATTTAAGTTaGGTAGAGATTCTGTACACT | + |
|
Preference number: 5 (lower is better) Translates to: VEQNPDSGLLMTKVLLDMSLHLS*VEILYT Trigger: AGTGTACAGAATCTCTACCAAACTTAAATGCAGAGA...CATATCCAACAATACCTTTGTCATCAAGAGACCAGAATCTGGATTCTGTTCTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS-3UTR CAA 90 bp | TCTTCTTTGCAAACCTTTAGAACTCTTGAAGCTGATTGGTCCCAACTATTAAGTATTTGGAGCATGAAGTaGGAAATTAGTAGCATCCTG | + |
|
Preference number: 5 (lower is better) Translates to: SSLQTFRTLEADWSQLLSIWSMK*EISSIL Trigger: CAGGATGCTACTAATTTCCAACTTCATGCTCCAAAT...ACTTAATAGTTGGGACCAATCAGCTTCAAGAGTTCTAAAGGTTTGCAAAGAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CCA 90 bp | TGCAACTCAAGAACAAAGTTCTCATATTGTTTCAATAGATTATTCTaGGTAGACTCAGATAGGACATCACAATTTTGCATCTGCTGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: CNSRTKFSYCFNRLF*VDSDRTSQFCICCD Trigger: GTCACAGCAGATGCAAAATTGTGATGTCCTATCTGAGTCTACCCAGAATAATCTATTGAAACAATATGAGAACTTTGTTCTTGAGTTGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CCA 72 bp | TGCTGCCGGGCTCTTTTGGCAGGAGTGACAGGCAGGTaGGCTCCCTGCAACTGTCTAGGCCCATCCTTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: CCRALLAGVTGR*APCNCLGPSFG Trigger: ACCAAAGGATGGGCCTAGACAGTTGCAGGGAGCCCACCTGCCTGTCACTCCTGCCAAAAGAGCCCGGCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS GCA 72 bp | GCTCTTTTGGCAGGAGTGACAGGCAGGTGGGCTCCCTaGAACTGTCTAGGCCCATCCTTTGGTAGTGGACGC | + |
|
Preference number: 6 (lower is better) Translates to: ALLAGVTGRWAP*NCLGPSFGSGR Trigger: GCGTCCACTACCAAAGGATGGGCCTAGACAGTTGCAGGGAGCCCACCTGCCTGTCACTCCTGCCAAAAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS TCA 72 bp | GGCTGGGTTACCATGAAACTGAGGAATATGGTCACCTaGGTAAGGACCAGACATCACTGGGGTATTCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GWVTMKLRNMVT*VRTRHHWGIQG Trigger: GCCCTGAATACCCCAGTGATGTCTGGTCCTTACTCAGGTGACCATATTCCTCAGTTTCATGGTAACCCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS TCA 72 bp | TGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTTaGACTTGTGGCTGCAGAATCAGATTGCCTCCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: CPVIGGLSSVGC*TCGCRIRLPPL Trigger: GAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CAA 72 bp | TTGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTaGAACTTGTGGCTGCAGAATCAGATTGCCTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LPCYRRFIISWM*NLWLQNQIASS Trigger: AGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CAA 72 bp | GATTTCTTCATTCTGAGTGGGGTCAGCTTGTCCATTTaGGAACTGGTCTCTCTGATTGGTCTCACGATAACT | + |
|
Preference number: 6 (lower is better) Translates to: DFFILSGVSLSI*ELVSLIGLTIT Trigger: AGTTATCGTGAGACCAATCAGAGAGACCAGTTCCAAAATGGACAAGCTGACCCCACTCAGAATGAAGAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
||
| CDS CAA 90 bp | AACTTGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTTGAACTaGTGGCTGCAGAATCAGATTGCCTCCTCTCAAAAAGGAAGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: NLPCYRRFIISWMLN*WLQNQIASSQKGSL Trigger: GAGACTTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CAA 90 bp | AGGTACAACTTGCCCTGTTATAGGAGGTTTATCATCAGTTGGATGTaGAACTTGTGGCTGCAGAATCAGATTGCCTCCTCTCAAAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: RYNLPCYRRFIISWM*NLWLQNQIASSQKG Trigger: TCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAAGTTGTACCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS TCA 72 bp | GGTAGGTTGTCCATTATATCTGTGATTTCTTCATTCTaGGTGGGGTCAGCTTGTCCATTTTGGAACTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: GRLSIISVISSF*VGSACPFWNWS Trigger: AGACCAGTTCCAAAATGGACAAGCTGACCCCACTCAGAATGAAGAAATCACAGATATAATGGACAACCTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS GCA 72 bp | CAGTTGGATGTTGAACTTGTGGCTGCAGAATCAGATTaGCTCCTCTCAAAAAGGAAGTCTCTGCATTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: QLDVELVAAESD*LLSKRKSLHLS Trigger: ACTTAAATGCAGAGACTTCCTTTTTGAGAGGAGGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CCA 72 bp | TACAACTTGCCCTGTTATAGGAGGTTTATCATCAGTTaGATGTTGAACTTGTGGCTGCAGAATCAGATTGCC | + |
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Preference number: 6 (lower is better) Translates to: YNLPCYRRFIIS*MLNLWLQNQIA Trigger: GGCAATCTGATTCTGCAGCCACAAGTTCAACATCCAACTGATGATAAACCTCCTATAACAGGGCAAGTTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CAA 72 bp | TATATCTGTGATTTCTTCATTCTGAGTGGGGTCAGCTaGTCCATTTTGGAACTGGTCTCTCTGATTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: YICDFFILSGVS*SILELVSLIGL Trigger: GAGACCAATCAGAGAGACCAGTTCCAAAATGGACAAGCTGACCCCACTCAGAATGAAGAAATCACAGATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CAA 90 bp | GTTGTCCATTATATCTGTGATTTCTTCATTCTGAGTGGGGTCAGCTaGTCCATTTTGGAACTGGTCTCTCTGATTGGTCTCACGATAACT | + |
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Preference number: 6 (lower is better) Translates to: VVHYICDFFILSGVS*SILELVSLIGLTIT Trigger: AGTTATCGTGAGACCAATCAGAGAGACCAGTTCCAAAATGGACAAGCTGACCCCACTCAGAATGAAGAAATCACAGATATAATGGACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CAA 90 bp | TATATCTGTGATTTCTTCATTCTGAGTGGGGTCAGCTTGTCCATTTaGGAACTGGTCTCTCTGATTGGTCTCACGATAACTCAAATTTGG | + |
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Preference number: 6 (lower is better) Translates to: YICDFFILSGVSLSI*ELVSLIGLTITQIW Trigger: CCAAATTTGAGTTATCGTGAGACCAATCAGAGAGACCAGTTCCAAAATGGACAAGCTGACCCCACTCAGAATGAAGAAATCACAGATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS TCA 72 bp | TGGAGGTGTCGTTTCTTGTGTCATTGGTTCACCAAATaGTTGCTGCAACTCAAGAACAAAGTTCTCATATTG | + |
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Preference number: 6 (lower is better) Translates to: WRCRFLCHWFTK*LLQLKNKVLIL Trigger: CAATATGAGAACTTTGTTCTTGAGTTGCAGCAATCATTTGGTGAACCAATGACACAAGAAACGACACCTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CCA 72 bp | TGGAGAGATGTTGCTTTTGTCAACTGTAACATTCATTaGAGGTGTCGTTTCTTGTGTCATTGGTTCACCAAA | + |
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Preference number: 6 (lower is better) Translates to: WRDVAFVNCNIH*RCRFLCHWFTK Trigger: TTTGGTGAACCAATGACACAAGAAACGACACCTCCAATGAATGTTACAGTTGACAAAAGCAACATCTCTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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| CDS CCA 72 bp | ATTTGGAGCATGAAGTTGGAAATTAGTAGCATCCTGTaGAGAGATGTTGCTTTTGTCAACTGTAACATTCAT | + |
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Preference number: 6 (lower is better) Translates to: IWSMKLEISSIL*RDVAFVNCNIH Trigger: ATGAATGTTACAGTTGACAAAAGCAACATCTCTCCACAGGATGCTACTAATTTCCAACTTCATGCTCCAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096301.5 ENSMUST00000112843.2 |
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