RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RTL10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000086965

Ensembl transcript IDs: ENSMUST00000146673.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GCCCAAGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGAGGCCAAGAAGCAGCTaGGCAGGGTGTGGCAGAATG +
Preference number: 4 (lower is better)
Translates to: AQARPISQLRFSQTELRLRPRSS*AGCGRM
Trigger: CATTCTGCCACACCCTGCCCAGCTGCTTCTTGGCCT...CAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CCA 90 bp GCCCAAGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGGAGTGGCCAAGGGTCTaGTATGCATCCAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: AQARPISQLRFSQTELRLEWPRV*YASSWR
Trigger: CCTCCAGCTGGATGCATACCAGACCCTTGGCCACTC...CAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR GCA 90 bp GCCCAAGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGTGGAGGGCTCCTTTCTaGAGGCTTACTGGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: AQARPISQLRFSQTELRLWRAPF*RLTGSR
Trigger: TCTGCTGCCAGTAAGCCTGCAGAAAGGAGCCCTCCA...CAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CCA 90 bp GCCCAAGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGGAAGTCTGTCCTGAGTaGCCAAGGGTCTGGTATGCA +
Preference number: 4 (lower is better)
Translates to: AQARPISQLRFSQTELRLEVCPE*PRVWYA
Trigger: TGCATACCAGACCCTTGGCCACTCAGGACAGACTTC...CAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCTTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR TCA 90 bp GAGATCCTGGCAGAAGAGTTCATAATCGCCAGGCAAGGTACCTATTTCGGTAGGAGTGGAAGTCTGTCCTaGGTGGCCAAGGGTCTGGTA +
Preference number: 4 (lower is better)
Translates to: EILAEEFIIARQGTYFGRSGSLS*VAKGLV
Trigger: TACCAGACCCTTGGCCACTCAGGACAGACTTCCACT...CCTACCGAAATAGGTACCTTGCCTGGCGATTATGAACTCTTCTGCCAGGATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR GCA 90 bp CTTCTTCGAGATCCTGGCAGAAGAGTTCATAATCGCCAGGCAAGGTACCTATTTGGGTTGCCAGGGCTCTaGCAATGGTACCTGCCACGA +
Preference number: 4 (lower is better)
Translates to: LLRDPGRRVHNRQARYLFGLPGL*QWYLPR
Trigger: TCGTGGCAGGTACCATTGGCAGAGCCCTGGCAACCC...AAATAGGTACCTTGCCTGGCGATTATGAACTCTTCTGCCAGGATCTCGAAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CCA 90 bp CAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGTCCTAATACCAGGGCTCTGCCAATaGTACCTGCCACGAAGCCTG +
Preference number: 4 (lower is better)
Translates to: QAYQSTEVLTDRAEIVLIPGLCQ*YLPRSL
Trigger: CAGGCTTCGTGGCAGGTACCATTGGCAGAGCCCTGG...TATTAGGACAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR TCA 90 bp CTTCTTCGAGATCCTGGCAGAAGAGTTCATAATCGCCAGGCAAGGTACCTATTTTGTTCCACTCCACGGTaGTGCATACACATGTGGGGT +
Preference number: 4 (lower is better)
Translates to: LLRDPGRRVHNRQARYLFCSTPR*CIHMWG
Trigger: ACCCCACATGTGTATGCATCACCGTGGAGTGGAACA...AAATAGGTACCTTGCCTGGCGATTATGAACTCTTCTGCCAGGATCTCGAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CCA 90 bp GCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGTCCTAATAGTGATAGAAGACCTGGTGTaGACAGAAGAGGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: AYQSTEVLTDRAEIVLIVIEDLV*TEEAGT
Trigger: TGTGCCTGCCTCTTCTGTCCACACCAGGTCTTCTAT...CACTATTAGGACAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 90 bp AAGTCCCATCGTCTGCTGCCAAGGATGTGCGTTGGTGAAACTGGCTaGCATCTGGACAGGGTTGCCAGGGCTCTGCCAATGGTACCTGCC +
Preference number: 5 (lower is better)
Translates to: KSHRLLPRMCVGETG*HLDRVARALPMVPA
Trigger: GGCAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACATCCTTGGCAGCAGACGATGGGACTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 90 bp ATCGTCTGCTGCCAAGGATGTGCGTTGGTGAAACTGGCTGCCATCTaGACAGGGTTGCCAGGGCTCTGCCAATGGTACCTGCCACGAAGC +
Preference number: 5 (lower is better)
Translates to: IVCCQGCALVKLAAI*TGLPGLCQWYLPRS
Trigger: GCTTCGTGGCAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACATCCTTGGCAGCAGACGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS TCA 90 bp ACAGGAGGGCCTCTCAGACCAGGAATCCGCCAAGGGATCATGTCGTaGAGTCCCATCGTCTGCTGCCAAGGATGTGCGTTGGTGAAACTG +
Preference number: 5 (lower is better)
Translates to: TGGPLRPGIRQGIMS*SPIVCCQGCALVKL
Trigger: CAGTTTCACCAACGCACATCCTTGGCAGCAGACGATGGGACTTCACGACATGATCCCTTGGCGGATTCCTGGTCTGAGAGGCCCTCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CAA 90 bp GAGATCCTGGCAGAAGAGTTCATAATCGCCAGGCAAGGTACCTATTTCGGTAGGGCCATCTGGACAGGGTaGCCAGGGCTCTGCCAATGG +
Preference number: 5 (lower is better)
Translates to: EILAEEFIIARQGTYFGRAIWTG*PGLCQW
Trigger: CCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGC...CCTACCGAAATAGGTACCTTGCCTGGCGATTATGAACTCTTCTGCCAGGATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 90 bp GTGGAAGTCTGTCCTGAGTGGCCAAGGGTCTGGTATGCATCCAGCTaGAGGGCTCCTTTCTGCAGGCTTACTGGCAGCAGAGTCATTAAT +
Preference number: 5 (lower is better)
Translates to: VEVCPEWPRVWYASS*RAPFCRLTGSRVIN
Trigger: ATTAATGACTCTGCTGCCAGTAAGCCTGCAGAAAGGAGCCCTCCAGCTGGATGCATACCAGACCCTTGGCCACTCAGGACAGACTTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CAA 90 bp GGCCCAAGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTTGCCAAGGATGTGCGTaGGTGAAACTGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: GPSQAYQSTEVLTDRAEICQGCA*VKLAAI
Trigger: GATGGCAGCCAGTTTCACCAACGCACATCCTTGGCA...AATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCTTGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS-3UTR CAA 90 bp AGCCAGGCCTATCAGTCAACTGAGGTTCTCACAGACAGAGCTGAGATTGTCCTAATCGAAGGTTCCAGGTaGGAGCCAGGAACCCAGTGG +
Preference number: 5 (lower is better)
Translates to: SQAYQSTEVLTDRAEIVLIEGSR*EPGTQW
Trigger: CCACTGGGTTCCTGGCTCCAACCTGGAACCTTCGAT...TAGGACAATCTCAGCTCTGTCTGTGAGAACCTCAGTTGACTGATAGGCCTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 72 bp TCTGGACAGGGTTGCCAGGGCTCTGCCAATGGTACCTaGCACGAAGCCTGCCAGGAGCGAAGGAAGGACGGG +
Preference number: 6 (lower is better)
Translates to: SGQGCQGSANGT*HEACQERRKDG
Trigger: CCCGTCCTTCCTTCGCTCCTGGCAGGCTTCGTGGCAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 72 bp TGCCAGGGCTCTGCCAATGGTACCTGCCACGAAGCCTaGCAGGAGCGAAGGAAGGACGGGCCCATAGAAGAC +
Preference number: 6 (lower is better)
Translates to: CQGSANGTCHEA*QERRKDGPIED
Trigger: GTCTTCTATGGGCCCGTCCTTCCTTCGCTCCTGGCAGGCTTCGTGGCAGGTACCATTGGCAGAGCCCTGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 72 bp GCTGCCATCTGGACAGGGTTGCCAGGGCTCTGCCAATaGTACCTGCCACGAAGCCTGCCAGGAGCGAAGGAA +
Preference number: 6 (lower is better)
Translates to: AAIWTGLPGLCQ*YLPRSLPGAKE
Trigger: TTCCTTCGCTCCTGGCAGGCTTCGTGGCAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 72 bp CGTCTGCTGCCAAGGATGTGCGTTGGTGAAACTGGCTaGCATCTGGACAGGGTTGCCAGGGCTCTGCCAATG +
Preference number: 6 (lower is better)
Translates to: RLLPRMCVGETG*HLDRVARALPM
Trigger: CATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACATCCTTGGCAGCAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CAA 72 bp TGTGCGTTGGTGAAACTGGCTGCCATCTGGACAGGGTaGCCAGGGCTCTGCCAATGGTACCTGCCACGAAGC +
Preference number: 6 (lower is better)
Translates to: CALVKLAAIWTG*PGLCQWYLPRS
Trigger: GCTTCGTGGCAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 72 bp TGCCAAGGATGTGCGTTGGTGAAACTGGCTGCCATCTaGACAGGGTTGCCAGGGCTCTGCCAATGGTACCTG +
Preference number: 6 (lower is better)
Translates to: CQGCALVKLAAI*TGLPGLCQWYL
Trigger: CAGGTACCATTGGCAGAGCCCTGGCAACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACATCCTTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 72 bp TGTCCTGAGTGGCCAAGGGTCTGGTATGCATCCAGCTaGAGGGCTCCTTTCTGCAGGCTTACTGGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: CPEWPRVWYASS*RAPFCRLTGSR
Trigger: TCTGCTGCCAGTAAGCCTGCAGAAAGGAGCCCTCCAGCTGGATGCATACCAGACCCTTGGCCACTCAGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS CCA 72 bp GCCATCGAAGGTTCCAGGTTGGAGCCAGGAACCCAGTaGAAGTCTGTCCTGAGTGGCCAAGGGTCTGGTATG +
Preference number: 6 (lower is better)
Translates to: AIEGSRLEPGTQ*KSVLSGQGSGM
Trigger: CATACCAGACCCTTGGCCACTCAGGACAGACTTCCACTGGGTTCCTGGCTCCAACCTGGAACCTTCGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS TCA 72 bp CCTCTCAGACCAGGAATCCGCCAAGGGATCATGTCGTaGAGTCCCATCGTCTGCTGCCAAGGATGTGCGTTG +
Preference number: 6 (lower is better)
Translates to: PLRPGIRQGIMS*SPIVCCQGCAL
Trigger: CAACGCACATCCTTGGCAGCAGACGATGGGACTTCACGACATGATCCCTTGGCGGATTCCTGGTCTGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 72 bp CATGTCGTGAAGTCCCATCGTCTGCTGCCAAGGATGTaGGTTGGTGAAACTGGCTGCCATCTGGACAGGGTT +
Preference number: 6 (lower is better)
Translates to: HVVKSHRLLPRM*VGETGCHLDRV
Trigger: AACCCTGTCCAGATGGCAGCCAGTTTCACCAACGCACATCCTTGGCAGCAGACGATGGGACTTCACGACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2
CDS GCA 72 bp AGGGTCTGGTATGCATCCAGCTGGAGGGCTCCTTTCTaGAGGCTTACTGGCAGCAGAGTCATTAATTCCACT +
Preference number: 6 (lower is better)
Translates to: RVWYASSWRAPF*RLTGSRVINST
Trigger: AGTGGAATTAATGACTCTGCTGCCAGTAAGCCTGCAGAAAGGAGCCCTCCAGCTGGATGCATACCAGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146673.2