Pregenerated sensors for RTF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027502Ensembl transcript IDs: ENSMUST00000029005.4
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATTTTCTAAGTACAAAGGTCATGCGCCCAGGGTCCCTTGGACCATaGTCACTCCCACCCTGCTGCACACTCCTACCATGCTCCCAGCAC | + |
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Preference number: 1 (lower is better) Translates to: NFLSTKVMRPGSLGP*SLPPCCTLLPCSQH Trigger: GTGCTGGGAGCATGGTAGGAGTGTGCAGCAGGGTGGGAGTGAGCATGGTCCAAGGGACCCTGGGCGCATGACCTTTGTACTTAGAAAATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CCA 90 bp | TGGGGATGGAAAAGGAGTCATTCCTGCCTGCCACCGGCACCTGGATaGCTGCCATTCTCTTACCAAGATAGCGGAGGGAGAGAGAAGGAA | + |
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Preference number: 1 (lower is better) Translates to: WGWKRSHSCLPPAPG*LPFSYQDSGGREKE Trigger: TTCCTTCTCTCTCCCTCCGCTATCTTGGTAAGAGAATGGCAGCCATCCAGGTGCCGGTGGCAGGCAGGAATGACTCCTTTTCCATCCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 90 bp | CCTACCATGCTCCCAGCACTGTCCCAGAATAAATGCAAGTGTATTTaGGGCCAAGCCTCATCGCCTGCAAGCAGCAAACCAGAGGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: PTMLPALSQNKCKCI*GQASSPASSKPEGS Trigger: GCTGCCCTCTGGTTTGCTGCTTGCAGGCGATGAGGCTTGGCCTCAAATACACTTGCATTTATTCTGGGACAGTGCTGGGAGCATGGTAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR GCA 90 bp | GATGGAAAAGGAGTCATTCCTGCCTGCCACCGGCACCTGGATGGCTaGCATTCTCTTACCAAGATAGCGGAGGGAGAGAGAAGGAAGACA | + |
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Preference number: 1 (lower is better) Translates to: DGKGVIPACHRHLDG*HSLTKIAEGERRKT Trigger: TGTCTTCCTTCTCTCTCCCTCCGCTATCTTGGTAAGAGAATGGCAGCCATCCAGGTGCCGGTGGCAGGCAGGAATGACTCCTTTTCCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR GCA 90 bp | TCCCTTGGACCATGCTCACTCCCACCCTGCTGCACACTCCTACCATaGTCCCAGCACTGTCCCAGAATAAATGCAAGTGTATTTGAGGCC | + |
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Preference number: 1 (lower is better) Translates to: SLGPCSLPPCCTLLP*SQHCPRINASVFEA Trigger: GGCCTCAAATACACTTGCATTTATTCTGGGACAGTGCTGGGAGCATGGTAGGAGTGTGCAGCAGGGTGGGAGTGAGCATGGTCCAAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 90 bp | GCATGCGTCCTCTCTGCAGTCCTTGATCAGGCAAGAAGAACCCTGTaGGGAGCAAGGTCTAAGACTGTTGGAAGTCTGTCCCTAAGCTCG | + |
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Preference number: 1 (lower is better) Translates to: ACVLSAVLDQARRTL*GARSKTVGSLSLSS Trigger: CGAGCTTAGGGACAGACTTCCAACAGTCTTAGACCTTGCTCCTCACAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGGACGCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 90 bp | TCTAAACTCTGGTCCACAAGTGTCCATGGCGAGTGCTTTATCCACTaGGTGAGCCATCTGCCCAGCCCAGAGGCAGATCTATCACACCAC | + |
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Preference number: 1 (lower is better) Translates to: SKLWSTSVHGECFIH*VSHLPSPEADLSHH Trigger: GTGGTGTGATAGATCTGCCTCTGGGCTGGGCAGATGGCTCACTCAGTGGATAAAGCACTCGCCATGGACACTTGTGGACCAGAGTTTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGCTAGTGTCTGAGGCAGGTTCTCCTCGAACCCTGAACTCAGTGCCTTGCAAAAGGAGTCATTCCTaGCTGCCACCGGCACCTGGA | + |
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Preference number: 2 (lower is better) Translates to: LQLVSEAGSPRTLNSVPCKRSHS*LPPAPG Trigger: TCCAGGTGCCGGTGGCAGGCAGGAATGACTCCTTTT...GCAAGGCACTGAGTTCAGGGTTCGAGGAGAACCTGCCTCAGACACTAGCTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR TCA 90 bp | CACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGACAAGTCACCAGGCTAGGTaGGAGGTACGGCCTGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: HHVWFGNRDFKCGGQRLTSHQAR*EVRPVD Trigger: GTCCACAGGCCGTACCTCTCACCTAGCCTGGTGACT...TGTCAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR GCA 90 bp | TGCCACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGCCAGGCAGTCAGGCATaGGTCCTCTCTGCAGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: CHHVWFGNRDFKCGGQRLPGSQA*VLSAVL Trigger: AAGGACTGCAGAGAGGACGCATGCCTGACTGCCTGG...CAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CAA 90 bp | GTTAGTGTGCACCAGGCAGTCAGGCATGCGTCCTCTCTGCAGTCCTaGATCAGGCAAGAAGAACCCTGTGAGGAGCAAGGTCTAAGACTG | + |
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Preference number: 2 (lower is better) Translates to: VSVHQAVRHASSLQS*IRQEEPCEEQGLRL Trigger: CAGTCTTAGACCTTGCTCCTCACAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGGACGCATGCCTGACTGCCTGGTGCACACTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTGGAGTCTTTTGTTACCTAATAGAAGCAGCAGTCACCAGGCTAGGTGAGAGTGACCACGCTGGCTaGGGACTGCAGAGGACAGCT | + |
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Preference number: 2 (lower is better) Translates to: RAGVFCYLIEAAVTRLGESDHAG*GLQRTA Trigger: AGCTGTCCTCTGCAGTCCTCAGCCAGCGTGGTCACT...CTCACCTAGCCTGGTGACTGCTGCTTCTATTAGGTAACAAAAGACTCCAGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR CCA 90 bp | CACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGACAGTCCACAAGTGTCCATaGCGAGTGCTTTATCCACTG | + |
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Preference number: 2 (lower is better) Translates to: HHVWFGNRDFKCGGQRLTVHKCP*RVLYPL Trigger: CAGTGGATAAAGCACTCGCCATGGACACTTGTGGAC...TGTCAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR TCA 90 bp | CTGCACACTCCTACCATGCTCCCAGCACTGTCCCAGAATAAATGCAAGTGTATTCCTCTCTGCAGTCCTTaGTCAGGCAAGAAGAACCCT | + |
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Preference number: 2 (lower is better) Translates to: LHTPTMLPALSQNKCKCIPLCSP*SGKKNP Trigger: AGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGG...AATACACTTGCATTTATTCTGGGACAGTGCTGGGAGCATGGTAGGAGTGTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCCTGAGGTGAGGGTTTGCTATTTAACCTTGCCAGCTCTGACATCTCGGCGACCTGCCTCAGTCTTCTaGCTGCTTGGATTAGACATG | + |
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Preference number: 2 (lower is better) Translates to: FPEVRVCYLTLPALTSRRPASVF*LLGLDM Trigger: CATGTCTAATCCAAGCAGTCAGAAGACTGAGGCAGG...TCGCCGAGATGTCAGAGCTGGCAAGGTTAAATAGCAAACCCTCACCTCAGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CCA 72 bp | CAGTGCCTTGCTGAGGGAACCCTGCCTTACAGGGGCTaGGATCACAGGCAGCTACTGCACTCACCGGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: QCLAEGTLPYRG*DHRQLLHSPGF Trigger: AAAGCCCGGTGAGTGCAGTAGCTGCCTGTGATCCCAGCCCCTGTAAGGCAGGGTTCCCTCAGCAAGGCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR GCA 72 bp | GGAGTCATTCCTGCCTGCCACCGGCACCTGGATGGCTaGCATTCTCTTACCAAGATAGCGGAGGGAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: GVIPACHRHLDG*HSLTKIAEGER Trigger: TCTCTCTCCCTCCGCTATCTTGGTAAGAGAATGGCAGCCATCCAGGTGCCGGTGGCAGGCAGGAATGACTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | ACCAGGCAGTCAGGCATGCGTCCTCTCTGCAGTCCTTaGTCAGGCAAGAAGAACCCTGTGAGGAGCAAGGTC | + |
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Preference number: 3 (lower is better) Translates to: TRQSGMRPLCSP*SGKKNPVRSKV Trigger: GACCTTGCTCCTCACAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGGACGCATGCCTGACTGCCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR GCA 72 bp | TGGCTGAGGACTGCAGAGGACAGCTTTATAGCACAGTaGCACACCAAGCAAGTGTGGCACAGAAGGCCACGG | + |
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Preference number: 3 (lower is better) Translates to: WLRTAEDSFIAQ*HTKQVWHRRPR Trigger: CCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTGTGCTATAAAGCTGTCCTCTGCAGTCCTCAGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CCA 72 bp | GACAGCTTTATAGCACAGTGCCACACCAAGCAAGTGTaGCACAGAAGGCCACGGGAAACCCAGGGTGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: DSFIAQCHTKQV*HRRPRETQGEG Trigger: GCCTTCACCCTGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTGTGCTATAAAGCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | CCACAAGTGTCCATGGCGAGTGCTTTATCCACTGAGTaGGCCATCTGCCCAGCCCAGAGGCAGATCTATCAC | + |
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Preference number: 3 (lower is better) Translates to: PQVSMASALSTE*AICPAQRQIYH Trigger: GTGATAGATCTGCCTCTGGGCTGGGCAGATGGCTCACTCAGTGGATAAAGCACTCGCCATGGACACTTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | TGGTCCACAAGTGTCCATGGCGAGTGCTTTATCCACTaGGTGAGCCATCTGCCCAGCCCAGAGGCAGATCTA | + |
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Preference number: 3 (lower is better) Translates to: WSTSVHGECFIH*VSHLPSPEADL Trigger: TAGATCTGCCTCTGGGCTGGGCAGATGGCTCACTCAGTGGATAAAGCACTCGCCATGGACACTTGTGGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CCA 72 bp | TTTTCTAAGTACAAAGGTCATGCGCCCAGGGTCCCTTaGACCATGCTCACTCCCACCCTGCTGCACACTCCT | + |
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Preference number: 3 (lower is better) Translates to: FSKYKGHAPRVP*TMLTPTLLHTP Trigger: AGGAGTGTGCAGCAGGGTGGGAGTGAGCATGGTCCAAGGGACCCTGGGCGCATGACCTTTGTACTTAGAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | TTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTaGCACTGGGAATCTCTCAACTGCACTCCAGCTAGT | + |
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Preference number: 3 (lower is better) Translates to: LGTGTLSVEARG*HWESLNCTPAS Trigger: ACTAGCTGGAGTGCAGTTGAGAGATTCCCAGTGTCAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR GCA 72 bp | TTAACCTTGCCAGCTCTGACATCTCGGCGATCCTCCTaGCTCAGTCTTCTGACTGCTTGGATTAGACATGCC | + |
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Preference number: 3 (lower is better) Translates to: LTLPALTSRRSS*LSLLTAWIRHA Trigger: GGCATGTCTAATCCAAGCAGTCAGAAGACTGAGGCAGGAGGATCGCCGAGATGTCAGAGCTGGCAAGGTTAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | CTCTCTGCAGTCCTTGATCAGGCAAGAAGAACCCTGTaGGGAGCAAGGTCTAAGACTGTTGGAAGTCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: LSAVLDQARRTL*GARSKTVGSLS Trigger: GGACAGACTTCCAACAGTCTTAGACCTTGCTCCTCACAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | ATCTGCCCAGCCCAGAGGCAGATCTATCACACCACATaGAGTGTCACAGAGGTCCCAATTTTAACTGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: ICPAQRQIYHTT*SVTEVPILTVG Trigger: CCCCACAGTTAAAATTGGGACCTCTGTGACACTTCATGTGGTGTGATAGATCTGCCTCTGGGCTGGGCAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR TCA 72 bp | CTCCCAGCACTGTCCCAGAATAAATGCAAGTGTATTTaGGGCCAAGCCTCATCGCCTGCAAGCAGCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: LPALSQNKCKCI*GQASSPASSKP Trigger: TGGTTTGCTGCTTGCAGGCGATGAGGCTTGGCCTCAAATACACTTGCATTTATTCTGGGACAGTGCTGGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| 3UTR CCA 72 bp | TCTCGGCGATCCTCCTGCCTCAGTCTTCTGACTGCTTaGATTAGACATGCCACCATGTTTGGTTTGGGAACA | + |
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Preference number: 3 (lower is better) Translates to: SRRSSCLSLLTA*IRHATMFGLGT Trigger: TGTTCCCAAACCAAACATGGTGGCATGTCTAATCCAAGCAGTCAGAAGACTGAGGCAGGAGGATCGCCGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR GCA 90 bp | GGCAGTCAGGCATGCGTCCTCTCTGCAGTCCTTGATCAGGCAAGAAGAACCCTGGTGTGGGTGACCCAGTaGGCAGACTCCTCCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GSQACVLSAVLDQARRTLVWVTQ*ADSSLE Trigger: CTCCAAGGAGGAGTCTGCGCACTGGGTCACCCACAC...CAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGGACGCATGCCTGACTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR TCA 90 bp | CTCCAGCTAGTGTCTGAGGCAGGTTCTCCTCGAACCCTGAACTCAGTGCCTTGCAGTAGGATGTGTGGGTaGCCCAGTGCGCAGACTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQLVSEAGSPRTLNSVPCSRMCG*PSAQTP Trigger: AGGAGTCTGCGCACTGGGTCACCCACACATCCTACT...GCAAGGCACTGAGTTCAGGGTTCGAGGAGAACCTGCCTCAGACACTAGCTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CCA 90 bp | TGCCACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGCGTGCCTCTTGGGGATaGTGCCTCCGTCGCAACCCA | + |
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Preference number: 4 (lower is better) Translates to: CHHVWFGNRDFKCGGQRLRASWG*CLRRNP Trigger: TGGGTTGCGACGGAGGCACCATCCCCAAGAGGCACG...CAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CCA 90 bp | TATAGCACAGTGCCACACCAAGCAAGTGTGGCACAGAAGGCCACGGGAAACCCAATGATGTCCTCCTCCTaGAAGGCAGCCCCACACGTG | + |
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Preference number: 4 (lower is better) Translates to: YSTVPHQASVAQKATGNPMMSSS*KAAPHV Trigger: CACGTGTGGGGCTGCCTTCCAGGAGGAGGACATCAT...TGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTGTGCTATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR GCA 90 bp | CACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGACACCCTTCACCAGCTCGTaGCTCTTGGGGATGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: HHVWFGNRDFKCGGQRLTPFTSS*LLGMVP Trigger: AGGCACCATCCCCAAGAGGCACGAGCTGGTGAAGGG...TGTCAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR GCA 90 bp | GAGCCATCTGCCCAGCCCAGAGGCAGATCTATCACACCACATGAAGTGTCACAGTTGATGCTTCTGATGTaGGATGCCGCCTTCCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: EPSAQPRGRSITPHEVSQLMLLM*DAAFPR Trigger: CCTGGGGAAGGCGGCATCGCACATCAGAAGCATCAA...CTGTGACACTTCATGTGGTGTGATAGATCTGCCTCTGGGCTGGGCAGATGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR GCA 90 bp | GGCAGTCAGGCATGCGTCCTCTCTGCAGTCCTTGATCAGGCAAGAAGAACCCTGCCGCCTCCTCAGGCTTaGCAGACTTCACTTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: GSQACVLSAVLDQARRTLPPPQA*QTSLLM Trigger: CATCAAAAGTGAAGTCTGGCAAGCCTGAGGAGGCGG...CAGGGTTCTTCTTGCCTGATCAAGGACTGCAGAGAGGACGCATGCCTGACTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CCA 90 bp | CTCCAGCTAGTGTCTGAGGCAGGTTCTCCTCGAACCCTGAACTCAGTGCCTTGCCTCACAGGCAACTATTaGGCGCCTCAGGATTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LQLVSEAGSPRTLNSVPCLTGNY*APQDFL Trigger: CAGGAAATCCTGAGGCGCCCAATAGTTGCCTGTGAG...GCAAGGCACTGAGTTCAGGGTTCGAGGAGAACCTGCCTCAGACACTAGCTGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CCA 90 bp | ATAGCACAGTGCCACACCAAGCAAGTGTGGCACAGAAGGCCACGGGAAACCCAGCGCTTGGCAGAGCTGTaGCTGGTGAAGATAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: IAQCHTKQVWHRRPRETQRLAEL*LVKIDL Trigger: CAAGTCTATCTTCACCAGCCACAGCTCTGCCAAGCG...CTGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTGTGCTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR TCA 90 bp | TGCCACCATGTTTGGTTTGGGAACAGGGACTTTAAGTGTGGAGGCCAGAGGCTGGCAGCCCCACACGTGTaGCACACTTCAGCTTTTATC | + |
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Preference number: 4 (lower is better) Translates to: CHHVWFGNRDFKCGGQRLAAPHV*HTSAFI Trigger: GATAAAAGCTGAAGTGTGTCACACGTGTGGGGCTGC...CAGCCTCTGGCCTCCACACTTAAAGTCCCTGTTCCCAAACCAAACATGGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR GCA 90 bp | GTTTGCTATTTAACCTTGCCAGCTCTGACATCTCGGCGATCCTCCTGCCTCAGTAGGAAGCAAAACCTGTaGCGGCCATTCATCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VCYLTLPALTSRRSSCLSRKQNL*RPFISR Trigger: CCTGGAGATGAATGGCCGGCACAGGTTTTGCTTCCT...ACTGAGGCAGGAGGATCGCCGAGATGTCAGAGCTGGCAAGGTTAAATAGCAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CCA 90 bp | AGAGCTGGAGTCTTTTGTTACCTAATAGAAGCAGCAGTCACCAGGCTAGGTGAGCTGCGGAATCTTGTGTaGTACCCGGCTTTGACGCAC | + |
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Preference number: 4 (lower is better) Translates to: RAGVFCYLIEAAVTRLGELRNLV*YPALTH Trigger: GTGCGTCAAAGCCGGGTACCACACAAGATTCCGCAG...CTCACCTAGCCTGGTGACTGCTGCTTCTATTAGGTAACAAAAGACTCCAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CAGTGCCACACCAAGCAAGTGTGGCACAGAAGGCCACGGGAAACCCAGGGTGAAGCCCCACATGGGGGCTaGCCAACTTTCCCAGACGCA | + |
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Preference number: 5 (lower is better) Translates to: QCHTKQVWHRRPRETQGEAPHGG*PTFPDA Trigger: TGCGTCTGGGAAAGTTGGCAAGCCCCCATGTGGGGC...TTCACCCTGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS TCA 90 bp | AAAACCTGTGCCGGCCATTCATCTCCAGGCCCACCACAGGGCAGATaGACCGCGCTCTCTGGAGGTCATCATGCTTGTCGCCCTTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: KTCAGHSSPGPPQGR*TALSGGHHACRPWC Trigger: ACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCCTGTGGTGGGCCTGGAGATGAATGGCCGGCACAGGTTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | GACCTGCTACTAGGGAGGTCACACACCACTTCTCACTCCCAGGGCCCTCAAGATCCTTCCCAGGCGGGGTaGTCAGAAAGCCTGAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: DLLLGRSHTTSHSQGPQDPSQAG*SESLSS Trigger: AGAGCTCAGGCTTTCTGACAACCCCGCCTGGGAAGG...ATCTTGAGGGCCCTGGGAGTGAGAAGTGGTGTGTGACCTCCCTAGTAGCAGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CCA 90 bp | TTCAGACTCCTCGCTGTCTGCAATGGACCTCTTCAGGGCCCCACATaGGGGCTTGCCAACTTTCCCAGACGCACTCCCATTAGTTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: FRLLAVCNGPLQGPT*GLANFPRRTPISCC Trigger: GCAGCAACTAATGGGAGTGCGTCTGGGAAAGTTGGCAAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGACAGCGAGGAGTCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CCACCGGCACCTGGATGGCTGCCATTCTCTTACCAAGATAGCGGAGGGAGAGAGGCTCACAGGCAACTATaGGGCGCCTCAGGATTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PPAPGWLPFSYQDSGGREAHRQL*GASGFP Trigger: AGGAAATCCTGAGGCGCCCAATAGTTGCCTGTGAGC...CTCTCTCCCTCCGCTATCTTGGTAAGAGAATGGCAGCCATCCAGGTGCCGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CAGTGCCACACCAAGCAAGTGTGGCACAGAAGGCCACGGGAAACCCAGGGTGAATGGAGGTCATCATGCTaGTCGCCCTTGGTGTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: QCHTKQVWHRRPRETQGEWRSSC*SPLVFP Trigger: AGGGAACACCAAGGGCGACAAGCATGATGACCTCCA...TTCACCCTGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CCA 90 bp | CCATTCATCTCCAGGCCCACCACAGGGCAGATGAACCGCGCTCTCTaGAGGTCATCATGCTTGTCGCCCTTGGTGTTCCCTTTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PFISRPTTGQMNRAL*RSSCLSPLVFPLSP Trigger: AGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCCTGTGGTGGGCCTGGAGATGAATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CTCCAGCTAGTGTCTGAGGCAGGTTCTCCTCGAACCCTGAACTCAGTGCCTTGCTCCGCCTCCTCAGGCTaGCCAGACTTCACTTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: LQLVSEAGSPRTLNSVPCSASSG*PDFTFD Trigger: ATCAAAAGTGAAGTCTGGCAAGCCTGAGGAGGCGGA...GCAAGGCACTGAGTTCAGGGTTCGAGGAGAACCTGCCTCAGACACTAGCTGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 90 bp | GTGGCTGGTGAAGATAGACTTGTAGGTTTCAGACTCCTCGCTGTCTaGAATGGACCTCTTCAGGGCCCCACATGGGGGCTTGCCAACTTT | + |
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Preference number: 5 (lower is better) Translates to: VAGEDRLVGFRLLAV*NGPLQGPTWGLANF Trigger: AAAGTTGGCAAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGACAGCGAGGAGTCTGAAACCTACAAGTCTATCTTCACCAGCCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CAGTGCCACACCAAGCAAGTGTGGCACAGAAGGCCACGGGAAACCCAGGGTGAAGCCTTCTCAGCAGATTaGTCCAACAGAAACTCGATG | + |
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Preference number: 5 (lower is better) Translates to: QCHTKQVWHRRPRETQGEAFSAD*SNRNSM Trigger: CATCGAGTTTCTGTTGGACAAATCTGCTGAGAAGGC...TTCACCCTGGGTTTCCCGTGGCCTTCTGTGCCACACTTGCTTGGTGTGGCACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | GAGCCATCTGCCCAGCCCAGAGGCAGATCTATCACACCACATGAAGTGTCACAGTCCTCCTTGGTGCCATaGAGCACAATGATGTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: EPSAQPRGRSITPHEVSQSSLVP*STMMSS Trigger: GGAGGACATCATTGTGCTCAATGGCACCAAGGAGGA...CTGTGACACTTCATGTGGTGTGATAGATCTGCCTCTGGGCTGGGCAGATGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | GACCTGCTACTAGGGAGGTCACACACCACTTCTCACTCCCAGGGCCCTCAAGATATCTCCACATCCTCCTaGGTGCCATTGAGCACAATG | + |
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Preference number: 5 (lower is better) Translates to: DLLLGRSHTTSHSQGPQDISTSS*VPLSTM Trigger: CATTGTGCTCAATGGCACCAAGGAGGATGTGGAGAT...ATCTTGAGGGCCCTGGGAGTGAGAAGTGGTGTGTGACCTCCCTAGTAGCAGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | CTGCACACTCCTACCATGCTCCCAGCACTGTCCCAGAATAAATGCAAGTGTATTTCCTCCTTGGAGCGCTaGGCAGAGCTGTGGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LHTPTMLPALSQNKCKCISSLER*AELWLV Trigger: CACCAGCCACAGCTCTGCCAAGCGCTCCAAGGAGGA...AATACACTTGCATTTATTCTGGGACAGTGCTGGGAGCATGGTAGGAGTGTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS TCA 90 bp | CCTTCCCCAGGGCCTTCTCAGCAGATTTGTCCAACAGAAACTCGATaGCCGCGTCTTTGTTATACAGTCTGCCAAGCTCACAGGCAACTA | + |
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Preference number: 5 (lower is better) Translates to: PSPGPSQQICPTETR*PRLCYTVCQAHRQL Trigger: TAGTTGCCTGTGAGCTTGGCAGACTGTATAACAAAGACGCGGTCATCGAGTTTCTGTTGGACAAATCTGCTGAGAAGGCCCTGGGGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 90 bp | AGAAAGCCTGAGCTCTGTCACATTCTTGATGCTTCTGATGTGCGATaGCGCCTTCCCCAGGGCCTTCTCAGCAGATTTGTCCAACAGAAA | + |
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Preference number: 5 (lower is better) Translates to: RKPELCHILDASDVR*RLPQGLLSRFVQQK Trigger: TTTCTGTTGGACAAATCTGCTGAGAAGGCCCTGGGGAAGGCGGCATCGCACATCAGAAGCATCAAGAATGTGACAGAGCTCAGGCTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | GAGCCATCTGCCCAGCCCAGAGGCAGATCTATCACACCACATGAAGTGTCACAGAGCTCTGTCACATTCTaGATGCTTCTGATGTGCGAT | + |
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Preference number: 5 (lower is better) Translates to: EPSAQPRGRSITPHEVSQSSVTF*MLLMCD Trigger: ATCGCACATCAGAAGCATCAAGAATGTGACAGAGCT...CTGTGACACTTCATGTGGTGTGATAGATCTGCCTCTGGGCTGGGCAGATGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS-3UTR CAA 90 bp | GTTTGCTATTTAACCTTGCCAGCTCTGACATCTCGGCGATCCTCCTGCCTCAGTCTGTCTTCGGTTTCTTaGTTTTCTTTTCCAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: VCYLTLPALTSRRSSCLSLSSVS*FSFPAW Trigger: CCAAGCTGGAAAAGAAAACAAAGAAACCGAAGACAG...ACTGAGGCAGGAGGATCGCCGAGATGTCAGAGCTGGCAAGGTTAAATAGCAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS TCA 72 bp | GCCGGCCATTCATCTCCAGGCCCACCACAGGGCAGATaGACCGCGCTCTCTGGAGGTCATCATGCTTGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AGHSSPGPPQGR*TALSGGHHACR Trigger: GCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCCTGTGGTGGGCCTGGAGATGAATGGCCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 72 bp | AACACACAACCGCAGCATCGGAGGAAGCAAAACCTGTaGCGGCCATTCATCTCCAGGCCCACCACAGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: NTQPQHRRKQNL*RPFISRPTTGQ Trigger: CTGCCCTGTGGTGGGCCTGGAGATGAATGGCCGGCACAGGTTTTGCTTCCTCCGATGCTGCGGTTGTGTGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CCA 72 bp | CTCGCTGTCTGCAATGGACCTCTTCAGGGCCCCACATaGGGGCTTGCCAACTTTCCCAGACGCACTCCCATT | + |
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Preference number: 6 (lower is better) Translates to: LAVCNGPLQGPT*GLANFPRRTPI Trigger: AATGGGAGTGCGTCTGGGAAAGTTGGCAAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGACAGCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 90 bp | GGGCAGATGAACCGCGCTCTCTGGAGGTCATCATGCTTGTCGCCCTaGGTGTTCCCTTTATCTCCTTCCCAGGCGGGGTTGTCAGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: GQMNRALWRSSCLSP*VFPLSPSQAGLSES Trigger: GCTTTCTGACAACCCCGCCTGGGAAGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CCA 72 bp | ACCGCGCTCTCTGGAGGTCATCATGCTTGTCGCCCTTaGTGTTCCCTTTATCTCCTTCCCAGGCGGGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: TALSGGHHACRP*CSLYLLPRRGC Trigger: ACAACCCCGCCTGGGAAGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 72 bp | GGGCAGATGAACCGCGCTCTCTGGAGGTCATCATGCTaGTCGCCCTTGGTGTTCCCTTTATCTCCTTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: GQMNRALWRSSC*SPLVFPLSPSQ Trigger: CTGGGAAGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 72 bp | TCTGCAATGGACCTCTTCAGGGCCCCACATGGGGGCTaGCCAACTTTCCCAGACGCACTCCCATTAGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SAMDLFRAPHGG*PTFPDALPLVA Trigger: AGCAACTAATGGGAGTGCGTCTGGGAAAGTTGGCAAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 90 bp | TCCTCCATCCTCTTCTTCAGCATCTCCACATCCTCCTTGGTGCCATaGAGCACAATGATGTCCTCCTCCTGGAAGGCAGCCCCACACGTG | + |
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Preference number: 6 (lower is better) Translates to: SSILFFSISTSSLVP*STMMSSSWKAAPHV Trigger: CACGTGTGGGGCTGCCTTCCAGGAGGAGGACATCATTGTGCTCAATGGCACCAAGGAGGATGTGGAGATGCTGAAGAAGAGGATGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 90 bp | AGCCTCCTCTCCTCCATCCTCTTCTTCAGCATCTCCACATCCTCCTaGGTGCCATTGAGCACAATGATGTCCTCCTCCTGGAAGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SLLSSILFFSISTSS*VPLSTMMSSSWKAA Trigger: GGCTGCCTTCCAGGAGGAGGACATCATTGTGCTCAATGGCACCAAGGAGGATGTGGAGATGCTGAAGAAGAGGATGGAGGAGAGGAGGCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 72 bp | AGCCTGAGCTCTGTCACATTCTTGATGCTTCTGATGTaGGATGCCGCCTTCCCCAGGGCCTTCTCAGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: SLSSVTFLMLLM*DAAFPRAFSAD Trigger: ATCTGCTGAGAAGGCCCTGGGGAAGGCGGCATCGCACATCAGAAGCATCAAGAATGTGACAGAGCTCAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 72 bp | ACAGGGCAGATGAACCGCGCTCTCTGGAGGTCATCATaGTTGTCGCCCTTGGTGTTCCCTTTATCTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: TGQMNRALWRSS*LSPLVFPLSPS Trigger: GGAAGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGCGCGGTTCATCTGCCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 72 bp | TTGATGGCCCTGCGGAATCTTGTGTGGTACCCGGCTTaGACGCACACTCGGTCGCTGTCTTCGGTTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LMALRNLVWYPA*THTRSLSSVSL Trigger: CAAAGAAACCGAAGACAGCGACCGAGTGTGCGTCAAAGCCGGGTACCACACAAGATTCCGCAGGGCCATCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 72 bp | GAGCTCTGTCACATTCTTGATGCTTCTGATGTGCGATaGCGCCTTCCCCAGGGCCTTCTCAGCAGATTTGTC | + |
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Preference number: 6 (lower is better) Translates to: ELCHILDASDVR*RLPQGLLSRFV Trigger: GACAAATCTGCTGAGAAGGCCCTGGGGAAGGCGGCATCGCACATCAGAAGCATCAAGAATGTGACAGAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS GCA 72 bp | GAAGATAGACTTGTAGGTTTCAGACTCCTCGCTGTCTaGAATGGACCTCTTCAGGGCCCCACATGGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: EDRLVGFRLLAV*NGPLQGPTWGL Trigger: AAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGACAGCGAGGAGTCTGAAACCTACAAGTCTATCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 72 bp | TGCGATGCCGCCTTCCCCAGGGCCTTCTCAGCAGATTaGTCCAACAGAAACTCGATGACCGCGTCTTTGTTA | + |
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Preference number: 6 (lower is better) Translates to: CDAAFPRAFSAD*SNRNSMTASLL Trigger: TAACAAAGACGCGGTCATCGAGTTTCTGTTGGACAAATCTGCTGAGAAGGCCCTGGGGAAGGCGGCATCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 72 bp | CTCTTCTTCAGCATCTCCACATCCTCCTTGGTGCCATaGAGCACAATGATGTCCTCCTCCTGGAAGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: LFFSISTSSLVP*STMMSSSWKAA Trigger: GGCTGCCTTCCAGGAGGAGGACATCATTGTGCTCAATGGCACCAAGGAGGATGTGGAGATGCTGAAGAAGAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS CAA 90 bp | CTTCTGATGTGCGATGCCGCCTTCCCCAGGGCCTTCTCAGCAGATTaGTCCAACAGAAACTCGATGACCGCGTCTTTGTTATACAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LLMCDAAFPRAFSAD*SNRNSMTASLLYSL Trigger: CAGACTGTATAACAAAGACGCGGTCATCGAGTTTCTGTTGGACAAATCTGCTGAGAAGGCCCTGGGGAAGGCGGCATCGCACATCAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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| CDS TCA 72 bp | GGGCCTTCTCAGCAGATTTGTCCAACAGAAACTCGATaGCCGCGTCTTTGTTATACAGTCTGCCAAGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: GPSQQICPTETR*PRLCYTVCQAH Trigger: GTGAGCTTGGCAGACTGTATAACAAAGACGCGGTCATCGAGTTTCTGTTGGACAAATCTGCTGAGAAGGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029005.4 |
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