Pregenerated sensors for RTCA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000339Ensembl transcript IDs: ENSMUST00000000348.15, ENSMUST00000140677.8, ENSMUST00000143425.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATTGCCGAAGGCTTGGTCCCTGGCCTCCTGCACGGGCTGGATGCTaGCGTACAGATCCCGGATCTCCTTCCGGATGCACCGCACAGCCG | + |
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Preference number: 1 (lower is better) Translates to: HCRRLGPWPPARAGC*RTDPGSPSGCTAQP Trigger: CGGCTGTGCGGTGCATCCGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 90 bp | AAACCATCATGGTGTAATCGATCTGCGGGGCCATCTCCGCATTGGTaGCGCCTTTCAGACGGAGCTCCGACGGGGAAGCCGCAAACAGGA | + |
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Preference number: 1 (lower is better) Translates to: KPSWCNRSAGPSPHW*RLSDGAPTGKPQTG Trigger: TCCTGTTTGCGGCTTCCCCGTCGGAGCTCCGTCTGAAAGGCGGCACCAATGCGGAGATGGCCCCGCAGATCGATTACACCATGATGGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR TCA 90 bp | CAGACGGAGCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATTaGAACCTGCATCAAGAGGCACACACTCCCTGCTGTCTTGGTATC | + |
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Preference number: 1 (lower is better) Translates to: QTELRRGSRKQDTGH*NLHQEAHTPCCLGI Trigger: GATACCAAGACAGCAGGGAGTGTGTGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGCTCCGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 90 bp | GATGTCTCAGCAACAATGATGATTCCACTCCCATTGCCGAAGGCTTaGTCCCTGGCCTCCTGCACGGGCTGGATGCTGACGTACAGATCC | + |
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Preference number: 1 (lower is better) Translates to: DVSATMMIPLPLPKA*SLASCTGWMLTYRS Trigger: GGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGGAATCATCATTGTTGCTGAGACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR TCA 90 bp | GTGGACTCCACCTCTGATCTTCTCGGGGGTAAAGGTTATCTCTGTTaGGCCGATTTCTGCTCCCTCCAGGTGCCCGCCACACAAATCACG | + |
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Preference number: 1 (lower is better) Translates to: VDSTSDLLGGKGYLC*ADFCSLQVPATQIT Trigger: CGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGAAATCGGCTCAACAGAGATAACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 90 bp | AGTCCTGTGGTAGCTGACGTCTCACTCACTGTGTTGCAGCATGCATaGGCTAAGTCAGTGCAACAAGGAGGTAGAGCGTACGTGAACACC | + |
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Preference number: 1 (lower is better) Translates to: SPVVADVSLTVLQHA*AKSVQQGGRAYVNT Trigger: GGTGTTCACGTACGCTCTACCTCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTCAGCTACCACAGGACT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| 3UTR CCA 90 bp | TGCATCAAGAGGCACACACTCCCTGCTGTCTTGGTATCTGCCGTGTaGACTCCACCTCTGATCTTCTCGGGGGTAAAGGTTATCTCTGTT | + |
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Preference number: 1 (lower is better) Translates to: CIKRHTLPAVLVSAV*TPPLIFSGVKVISV Trigger: AACAGAGATAACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGAGTGTGTGCCTCTTGATGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 90 bp | GGGGTAAAGGTTATCTCTGTTGAGCCGATTTCTGCTCCCTCCAGGTaGCCGCCACACAAATCACGAACCATTTCCAGTCCAGATAAATGC | + |
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Preference number: 1 (lower is better) Translates to: GVKVISVEPISAPSR*PPHKSRTISSPDKC Trigger: GCATTTATCTGGACTGGAAATGGTTCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGAAATCGGCTCAACAGAGATAACCTTTACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 90 bp | CACAGAGCCTCGATCAGTCAGATTTATTGGGTCCAATCGTTTAACTaGGGACACTCGGACAATCACTTCACCACCCCCTTTGGGGTAATA | + |
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Preference number: 1 (lower is better) Translates to: HRASISQIYWVQSFN*GHSDNHFTTPFGVI Trigger: TATTACCCCAAAGGGGGTGGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCTGACTGATCGAGGCTCTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| 3UTR CCA 90 bp | TCTCCCATAAATCTTGGTCACAGAGCCTCGATCAGTCAGATTTATTaGGTCCAATCGTTTAACTGGGGACACTCGGACAATCACTTCACC | + |
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Preference number: 1 (lower is better) Translates to: SPINLGHRASISQIY*VQSFNWGHSDNHFT Trigger: GGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCTGACTGATCGAGGCTCTGTGACCAAGATTTATGGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| 3UTR CAA 90 bp | AAGCAGCCAGTGGATGTCTCAGCAACAATGATGATTCCACTCCCATaGCCGAAGGCTTGGTCCCTGGCCTCCTGCACGGGCTGGATGCTG | + |
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Preference number: 2 (lower is better) Translates to: KQPVDVSATMMIPLP*PKAWSLASCTGWML Trigger: CAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGGAATCATCATTGTTGCTGAGACATCCACTGGCTGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR CCA 90 bp | CACGGGCTGGATGCTGACGTACAGATCCCGGATCTCCTTCCGGATGCACCGCACTTGGTATCTGCCGTGTaGACTCCACCTCTGATCTTC | + |
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Preference number: 2 (lower is better) Translates to: HGLDADVQIPDLLPDAPHLVSAV*TPPLIF Trigger: GAAGATCAGAGGTGGAGTCCACACGGCAGATACCAA...GTGCGGTGCATCCGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CAA 90 bp | TCAGACGGAGCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATaGAAACCTGCATCAAGAGGCACACACTCCCTGCTGTCTTGGTAT | + |
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Preference number: 2 (lower is better) Translates to: SDGAPTGKPQTGHRA*KPASRGTHSLLSWY Trigger: ATACCAAGACAGCAGGGAGTGTGTGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGCTCCGTCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR GCA 90 bp | CGGATGCACCGCACAGCCGCCGCCGCCATATCTTTTGCTACTTTTAGTGGCAAATCTGCTCCCTCCAGGTaGCCGCCACACAAATCACGA | + |
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Preference number: 2 (lower is better) Translates to: RMHRTAAAAISFATFSGKSAPSR*PPHKSR Trigger: TCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGA...TTTGCCACTAAAAGTAGCAAAAGATATGGCGGCGGCGGCTGTGCGGTGCATCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR CCA 90 bp | GATCCCGGATCTCCTTCCGGATGCACCGCACAGCCGCCGCCGCCATATCTTTTGCTCTCCCATAAATCTTaGTCACAGAGCCTCGATCAG | + |
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Preference number: 2 (lower is better) Translates to: DPGSPSGCTAQPPPPYLLLSHKS*SQSLDQ Trigger: CTGATCGAGGCTCTGTGACCAAGATTTATGGGAGAG...CAAAAGATATGGCGGCGGCGGCTGTGCGGTGCATCCGGAAGGAGATCCGGGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCGGATGCACCGCACAGCCGCCGCCGCCATATCTTTTGCTACTTTTAGTGGCTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCT | + |
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Preference number: 2 (lower is better) Translates to: FRMHRTAAAAISFATFSGCCLGI*RVDSTS Trigger: AGAGGTGGAGTCCACACGGCAGATACCAAGACAGCA...GCCACTAAAAGTAGCAAAAGATATGGCGGCGGCGGCTGTGCGGTGCATCCGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGGCCTCCTGCACGGGCTGGATGCTGACGTACAGATCCCGGATCTCCTTCCGAAACTTCTCAGCAATTaGCTTGAAAACCATCATGGT | + |
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Preference number: 2 (lower is better) Translates to: PGLLHGLDADVQIPDLLPKLLSN*LENHHG Trigger: ACCATGATGGTTTTCAAGCCAATTGCTGAGAAGTTT...CGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR TCA 90 bp | GACTATTACACATATTCATTACGTTTGATCGTTCACTGTCTATATCTGGGGAGAAAGTCCTGTGGTAGCTaGCGTCTCACTCACTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: DYYTYSLRLIVHCLYLGRKSCGS*RLTHCV Trigger: AACACAGTGAGTGAGACGTCAGCTACCACAGGACTT...TCTCCCCAGATATAGACAGTGAACGATCAAACGTAATGAATATGTGTAATAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| 3UTR TCA 72 bp | AGGCTTGGTCCCTGGCCTCCTGCACGGGCTGGATGCTaGCGTACAGATCCCGGATCTCCTTCCGGATGCACC | + |
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Preference number: 3 (lower is better) Translates to: RLGPWPPARAGC*RTDPGSPSGCT Trigger: GGTGCATCCGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 72 bp | TGGTGTAATCGATCTGCGGGGCCATCTCCGCATTGGTaGCGCCTTTCAGACGGAGCTCCGACGGGGAAGCCG | + |
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Preference number: 3 (lower is better) Translates to: WCNRSAGPSPHW*RLSDGAPTGKP Trigger: CGGCTTCCCCGTCGGAGCTCCGTCTGAAAGGCGGCACCAATGCGGAGATGGCCCCGCAGATCGATTACACCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 72 bp | CCACTCCCATTGCCGAAGGCTTGGTCCCTGGCCTCCTaGACGGGCTGGATGCTGACGTACAGATCCCGGATC | + |
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Preference number: 3 (lower is better) Translates to: PLPLPKAWSLAS*TGWMLTYRSRI Trigger: GATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | TTGCCGAAGGCTTGGTCCCTGGCCTCCTGCACGGGCTaGATGCTGACGTACAGATCCCGGATCTCCTTCCGG | + |
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Preference number: 3 (lower is better) Translates to: LPKAWSLASCTG*MLTYRSRISFR Trigger: CCGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | TCATGGTGTAATCGATCTGCGGGGCCATCTCCGCATTaGTGCCGCCTTTCAGACGGAGCTCCGACGGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: SWCNRSAGPSPH*CRLSDGAPTGK Trigger: CTTCCCCGTCGGAGCTCCGTCTGAAAGGCGGCACCAATGCGGAGATGGCCCCGCAGATCGATTACACCATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | GCAACAATGATGATTCCACTCCCATTGCCGAAGGCTTaGTCCCTGGCCTCCTGCACGGGCTGGATGCTGACG | + |
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Preference number: 3 (lower is better) Translates to: ATMMIPLPLPKA*SLASCTGWMLT Trigger: CGTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGGAATCATCATTGTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR-3UTR CAA 90 bp | ATCCCGGATCTCCTTCCGGATGCACCGCACAGCCGCCGCCGCCATATCTTTTGCACAGGACACAGGGCATaGAAACCTGCATCAAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: IPDLLPDAPHSRRRHIFCTGHRA*KPASRG Trigger: GCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGT...GCAAAAGATATGGCGGCGGCGGCTGTGCGGTGCATCCGGAAGGAGATCCGGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR TCA 72 bp | CTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATTaGAACCTGCATCAAGAGGCACACACTCCCTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LRRGSRKQDTGH*NLHQEAHTPCC Trigger: ACAGCAGGGAGTGTGTGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 72 bp | CATCAAGAGGCACACACTCCCTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCTGATCTTCTCGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: HQEAHTPCCLGI*RVDSTSDLLGG Trigger: ACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGAGTGTGTGCCTCTTGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR TCA 72 bp | ACCTCTGATCTTCTCGGGGGTAAAGGTTATCTCTGTTaGGCCGATTTCTGCTCCCTCCAGGTGCCCGCCACA | + |
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Preference number: 3 (lower is better) Translates to: TSDLLGGKGYLC*ADFCSLQVPAT Trigger: TGTGGCGGGCACCTGGAGGGAGCAGAAATCGGCTCAACAGAGATAACCTTTACCCCCGAGAAGATCAGAGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | AGGCACACACTCCCTGCTGTCTTGGTATCTGCCGTGTaGACTCCACCTCTGATCTTCTCGGGGGTAAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: RHTLPAVLVSAV*TPPLIFSGVKV Trigger: AACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGAGTGTGTGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR GCA 72 bp | GTTATCTCTGTTGAGCCGATTTCTGCTCCCTCCAGGTaGCCGCCACACAAATCACGAACCATTTCCAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: VISVEPISAPSR*PPHKSRTISSP Trigger: TGGACTGGAAATGGTTCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGAAATCGGCTCAACAGAGATAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | GTAGCTGACGTCTCACTCACTGTGTTGCAGCATGCATaGGCTAAGTCAGTGCAACAAGGAGGTAGAGCGTAC | + |
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Preference number: 3 (lower is better) Translates to: VADVSLTVLQHA*AKSVQQGGRAY Trigger: GTACGCTCTACCTCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTCAGCTAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| 3UTR-3UTR CAA 90 bp | AAACTTCTCAGCAATTGGCTTGAAAACCATCATGGTGTAATCGATCTGCGGGGCACACTCCCTGCTGTCTaGGTATCTGCCGTGTGGACT | + |
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Preference number: 3 (lower is better) Translates to: KLLSNWLENHHGVIDLRGTLPAV*VSAVWT Trigger: AGTCCACACGGCAGATACCAAGACAGCAGGGAGTGT...GCCCCGCAGATCGATTACACCATGATGGTTTTCAAGCCAATTGCTGAGAAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CCA 72 bp | TCGATCAGTCAGATTTATTGGGTCCAATCGTTTAACTaGGGACACTCGGACAATCACTTCACCACCCCCTTT | + |
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Preference number: 3 (lower is better) Translates to: SISQIYWVQSFN*GHSDNHFTTPF Trigger: AAAGGGGGTGGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCTGACTGATCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| 3UTR CCA 72 bp | GCAAAACACCGGCAACAAAAGCTCTCCCATAAATCTTaGTCACAGAGCCTCGATCAGTCAGATTTATTGGGT | + |
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Preference number: 3 (lower is better) Translates to: AKHRQQKLSHKS*SQSLDQSDLLG Trigger: ACCCAATAAATCTGACTGATCGAGGCTCTGTGACCAAGATTTATGGGAGAGCTTTTGTTGCCGGTGTTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| 3UTR TCA 72 bp | ATATTGAAGTTGACTATTACACATATTCATTACGTTTaGTCGTTCACTGTCTATATCTGGGGAGATATCCCA | + |
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Preference number: 3 (lower is better) Translates to: ILKLTITHIHYV*SFTVYIWGDIP Trigger: TGGGATATCTCCCCAGATATAGACAGTGAACGATCAAACGTAATGAATATGTGTAATAGTCAACTTCAATAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR TCA 90 bp | TCTGCTCCCTCCAGGTGCCCGCCACACAAATCACGAACCATTTCCAGTCCAGATGGGCGGTGGAGACCCTaGGGATCTGGCCGCCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: SAPSRCPPHKSRTISSPDGRWRP*GSGRPL Trigger: AAGGGGGCGGCCAGATCCTCAGGGTCTCCACCGCCC...ATCTGGACTGGAAATGGTTCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| CDS-3UTR TCA 90 bp | CTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAACAAGGAGGTAGAGCGTACGGGGCGGTGGAGACCCTaGGGATCTGGCCGCCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LCCSMHGLSQCNKEVERTGRWRP*GSGRPL Trigger: AAGGGGGCGGCCAGATCCTCAGGGTCTCCACCGCCC...CGTACGCTCTACCTCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR TCA 90 bp | TGTCTTGGTATCTGCCGTGTGGACTCCACCTCTGATCTTCTCGGGGGTAAAGGTGGCCGCCCCCTTCCATaGTCCCACCGTCCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: CLGICRVDSTSDLLGGKGGRPLP*SHRPPP Trigger: TGGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCC...ACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| 3UTR CAA 72 bp | GCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATaGAAACCTGCATCAAGAGGCACACACTCCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: APTGKPQTGHRA*KPASRGTHSLL Trigger: CAGCAGGGAGTGTGTGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| CDS-3UTR TCA 90 bp | GATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCAAGGGCCGCCCCCTTCCATaGTCCCACCGTCCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DGAFSATDSANLHLQRLKGRPLP*SHRPPP Trigger: TGGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCC...CTTGAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| 3UTR CAA 72 bp | AGCAACAATGATGATTCCACTCCCATTGCCGAAGGCTaGGTCCCTGGCCTCCTGCACGGGCTGGATGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SNNDDSTPIAEG*VPGLLHGLDAD Trigger: GTCAGCATCCAGCCCGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGGAATCATCATTGTTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| CDS-3UTR TCA 90 bp | GTAGCTGACGTCTCACTCACTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAAAGTCCAGATAAATGCTaGGGCCTGAGGCCCGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: VADVSLTVLQHAWAKSVQSPDKC*GLRPGV Trigger: CACGCCGGGCCTCAGGCCTCAGCATTTATCTGGACT...TTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTCAGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR TCA 90 bp | TGGCTTGAAAACCATCATGGTGTAATCGATCTGCGGGGCCATCTCCGCATTGGTAGTCCAGATAAATGCTaGGGCCTGAGGCCCGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: WLENHHGVIDLRGHLRIGSPDKC*GLRPGV Trigger: CACGCCGGGCCTCAGGCCTCAGCATTTATCTGGACT...ACCAATGCGGAGATGGCCCCGCAGATCGATTACACCATGATGGTTTTCAAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR TCA 90 bp | GTAGCTGACGTCTCACTCACTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAAGCACGGGCTGGATGCTaGCGTACAGATCCCGGATCT | + |
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Preference number: 4 (lower is better) Translates to: VADVSLTVLQHAWAKSVQARAGC*RTDPGS Trigger: AGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGC...TTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTCAGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | TCCAAAGACTCAAGTCCTGTGGTAGCTGACGTCTCACTCACTGTGTTGCAGCATCCATTGCCGAAGGCTTaGTCCCTGGCCTCCTGCACG | + |
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Preference number: 4 (lower is better) Translates to: SKDSSPVVADVSLTVLQHPLPKA*SLASCT Trigger: CGTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGG...ATGCTGCAACACAGTGAGTGAGACGTCAGCTACCACAGGACTTGAGTCTTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR TCA 90 bp | AGTCAGATTTATTGGGTCCAATCGTTTAACTGGGGACACTCGGACAATCACTTCGGCCGCCCCCTTCCATaGTCCCACCGTCCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SQIYWVQSFNWGHSDNHFGRPLP*SHRPPP Trigger: TGGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCC...GAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCTGACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| CDS-3UTR GCA 90 bp | GTAGCTGACGTCTCACTCACTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAATCTGCTCCCTCCAGGTaGCCGCCACACAAATCACGA | + |
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Preference number: 4 (lower is better) Translates to: VADVSLTVLQHAWAKSVQSAPSR*PPHKSR Trigger: TCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGA...TTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTCAGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR GCA 90 bp | GGGTCCAATCGTTTAACTGGGGACACTCGGACAATCACTTCACCACCCCCTTTGTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCT | + |
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Preference number: 4 (lower is better) Translates to: GSNRLTGDTRTITSPPPLCCLGI*RVDSTS Trigger: AGAGGTGGAGTCCACACGGCAGATACCAAGACAGCA...CAAAGGGGGTGGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR TCA 90 bp | GACGTCTCACTCACTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAACAAGGACAGGACACAGGGCATTaGAACCTGCATCAAGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: DVSLTVLQHAWAKSVQQGQDTGH*NLHQEA Trigger: TGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTG...TCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAGTGAGTGAGACGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | GATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCAAGCACTCCCTGCTGTCTTaGTATCTGCCGTGTGGACTC | + |
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Preference number: 4 (lower is better) Translates to: DGAFSATDSANLHLQRLKHSLLS*YLPCGL Trigger: GAGTCCACACGGCAGATACCAAGACAGCAGGGAGTG...CTTGAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR GCA 90 bp | CATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCT | + |
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Preference number: 4 (lower is better) Translates to: HDGAFSATDSANLHLQRLCCLGI*RVDSTS Trigger: AGAGGTGGAGTCCACACGGCAGATACCAAGACAGCA...GAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | CTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAACAAGGAGGTAGAGCGTACGCTCTCCCATAAATCTTaGTCACAGAGCCTCGATCAG | + |
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Preference number: 4 (lower is better) Translates to: LCCSMHGLSQCNKEVERTLSHKS*SQSLDQ Trigger: CTGATCGAGGCTCTGTGACCAAGATTTATGGGAGAG...CGTACGCTCTACCTCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR GCA 90 bp | AGATTTATTGGGTCCAATCGTTTAACTGGGGACACTCGGACAATCACTTCACCATCTGCTCCCTCCAGGTaGCCGCCACACAAATCACGA | + |
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Preference number: 4 (lower is better) Translates to: RFIGSNRLTGDTRTITSPSAPSR*PPHKSR Trigger: TCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCAGA...TGGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR GCA 90 bp | GACTATTACACATATTCATTACGTTTGATCGTTCACTGTCTATATCTGGGGAGAGGATCTCCTTCCGGATaGACCGCACAGCCGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: DYYTYSLRLIVHCLYLGRGSPSG*TAQPPP Trigger: CGGCGGCGGCTGTGCGGTGCATCCGGAAGGAGATCC...TCTCCCCAGATATAGACAGTGAACGATCAAACGTAATGAATATGTGTAATAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | CATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCTTGGTATCTGCCGTGTaGACTCCACCTCTGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: HDGAFSATDSANLHLQRLLVSAV*TPPLIF Trigger: GAAGATCAGAGGTGGAGTCCACACGGCAGATACCAA...GAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | AAACTTCTCAGCAATTGGCTTGAAAACCATCATGGTGTAATCGATCTGCGGGGCGAAACCCTGCTGTCTTaGTATCTGCCGTGTGGACTC | + |
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Preference number: 4 (lower is better) Translates to: KLLSNWLENHHGVIDLRGETLLS*YLPCGL Trigger: GAGTCCACACGGCAGATACCAAGACAGCAGGGTTTC...GCCCCGCAGATCGATTACACCATGATGGTTTTCAAGCCAATTGCTGAGAAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR TCA 90 bp | GATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCAAGTCTGCGTGTGGAGTGTaGCTGATCCTGTTTTTATTC | + |
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Preference number: 4 (lower is better) Translates to: DGAFSATDSANLHLQRLKSACGV*LILFLF Trigger: GAATAAAAACAGGATCAGTCACACTCCACACGCAGA...CTTGAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR GCA 90 bp | GAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCCTAGAGGTGTGGATTTaGCATCCCAATTCCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: ELNMMEHSQQLTVPTSISLEVWI*HPNSFT Trigger: TGTGAAGGAATTGGGATGGCAAATCCACACCTCTAG...GGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR GCA 90 bp | GAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCCATTCACACCTCTTTTaGCAAGTGATGATCCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: ELNMMEHSQQLTVPTSISHSHLF*QVMIQQ Trigger: TTGCTGGATCATCACTTGGCAAAAGAGGTGTGAATG...GGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | GAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAACTTCTCAGCAATTaGCTTGAAAACCATCATGGT | + |
|
Preference number: 4 (lower is better) Translates to: ELNMMEHSQQLTVPTSISKLLSN*LENHHG Trigger: ACCATGATGGTTTTCAAGCCAATTGCTGAGAAGTTT...GGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CCA 90 bp | CACGAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCATCCTGTTTTTATTCTaGAAATTCCATTGGCTAGCG | + |
|
Preference number: 4 (lower is better) Translates to: HELNMMEHSQQLTVPTSIILFLF*KFHWLA Trigger: CGCTAGCCAATGGAATTTCCAGAATAAAAACAGGAT...GATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTCGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR TCA 90 bp | TCACAATTAAATGTGAAACCAAACTTCTCAGCAATTGGCTTGAAAACCATCATGCAGGACACAGGGCATTaGAACCCTGCTGTCTTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SQLNVKPNFSAIGLKTIMQDTGH*NPAVLV Trigger: TACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTG...CATGATGGTTTTCAAGCCAATTGCTGAGAAGTTTGGTTTCACATTTAATTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR CCA 90 bp | TCACAATTAAATGTGAAACCAAACTTCTCAGCAATTGGCTTGAAAACCATCATGTTGGTATCTGCCGTGTaGACTCCACCTCTGATCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SQLNVKPNFSAIGLKTIMLVSAV*TPPLIF Trigger: GAAGATCAGAGGTGGAGTCCACACGGCAGATACCAA...CATGATGGTTTTCAAGCCAATTGCTGAGAAGTTTGGTTTCACATTTAATTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| 3UTR CAA 72 bp | AATATTGAAGTTGACTATTACACATATTCATTACGTTaGATCGTTCACTGTCTATATCTGGGGAGATATCCC | + |
|
Preference number: 4 (lower is better) Translates to: NIEVDYYTYSLR*IVHCLYLGRYP Trigger: GGGATATCTCCCCAGATATAGACAGTGAACGATCAAACGTAATGAATATGTGTAATAGTCAACTTCAATATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS GCA 90 bp | GTCATAAGACTGAGGCCCGGCGTGCTGCGGCCCGCGCGGATCTTCTaGACGCGCAAGGGTAGGCCCAGGAGGCAGCTCAGGGCGGTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: VIRLRPGVLRPARIF*TRKGRPRRQLRAVE Trigger: CTCCACCGCCCTGAGCTGCCTCCTGGGCCTACCCTTGCGCGTGCAGAAGATCCGCGCGGGCCGCAGCACGCCGGGCCTCAGTCTTATGAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140677.8 |
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| CDS CCA 90 bp | GGTAGGCCCAGGAGGCAGCTCAGGGCGGTGGAGACCCTGAGGATCTaGCCGCCCCCTTCCATGATCCCACCGTCCACCTCCACCCGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: GRPRRQLRAVETLRI*PPPSMIPPSTSTRW Trigger: CCAGCGGGTGGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCCAGATCCTCAGGGTCTCCACCGCCCTGAGCTGCCTCCTGGGCCTACC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000348.15 ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| CDS TCA 90 bp | CAGACGGAGCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATTaGAACCCTGCTGTCTTGGTATCTGCCGTGTGGACTCCACCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: QTELRRGSRKQDTGH*NPAVLVSAVWTPPL Trigger: CAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGCTCCGTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS GCA 90 bp | GCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATTGAAACCCTaGTGTCTTGGTATCTGCCGTGTGGACTCCACCTCTGATCTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: APTGKPQTGHRALKP*CLGICRVDSTSDLL Trigger: GAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR CAA 90 bp | CATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCCCCATTGCCGAAGGCTaGGTCCCTGGCCTCCTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: HDGAFSATDSANLHLQRLPIAEG*VPGLLH Trigger: GTGCAGGAGGCCAGGGACCAAGCCTTCGGCAATGGG...GAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS GCA 90 bp | CCGCAAACAGGACACAGGGCATTGAAACCCTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCTGATCTTCTCGGGGGTAAAGGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: PQTGHRALKPCCLGI*RVDSTSDLLGGKGY Trigger: ATAACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR CAA 90 bp | CACGAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCACACTCCCTGCTGTCTaGGTATCTGCCGTGTGGACT | + |
|
Preference number: 5 (lower is better) Translates to: HELNMMEHSQQLTVPTSITLPAV*VSAVWT Trigger: AGTCCACACGGCAGATACCAAGACAGCAGGGAGTGT...GATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTCGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CAA 90 bp | CATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCAAAGACTCACAGGACACAGGGCATaGAAACCTGCATCAAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: HDGAFSATDSANLHLQRLTGHRA*KPASRG Trigger: GCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGT...GAGTCTTTGGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CAA 90 bp | CTGTGTTGCAGCATGCATGGGCTAAGTCAGTGCAACAAGGAGGTAGAGCGTACGGCATTCACACCTCTTTaGCCAAGTGATGATCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LCCSMHGLSQCNKEVERTAFTPL*PSDDPA Trigger: TGCTGGATCATCACTTGGCAAAAGAGGTGTGAATGC...CGTACGCTCTACCTCCTTGTTGCACTGACTTAGCCCATGCATGCTGCAACACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CAA 90 bp | CTTCTCAGCAATTGGCTTGAAAACCATCATGGTGTAATCGATCTGCGGGGCCATACAGGACACAGGGCATaGAAACCCTGCTGTCTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: LLSNWLENHHGVIDLRGHTGHRA*KPCCLG Trigger: ACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGT...ATGGCCCCGCAGATCGATTACACCATGATGGTTTTCAAGCCAATTGCTGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS-3UTR CAA 90 bp | GAGCTTAACATGATGGAGCATTCTCAGCAACTGACAGTGCCAACCTCCATCTCCGCTTCAATCCCAACCTaGTCTGCATTCACACCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ELNMMEHSQQLTVPTSISASIPT*SAFTPL Trigger: AAGAGGTGTGAATGCAGACAAGGTTGGGATTGAAGC...GGAGATGGAGGTTGGCACTGTCAGTTGCTGAGAATGCTCCATCATGTTAAGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS CCA 90 bp | TTGGCCTTTGCTAGCTGTTCAGCAAAATGTATAGCAGTCTGCGTGTaGAGTGTGACTGATCCTGTTTTTATTCTGGAAATTCCATTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: LAFASCSAKCIAVCV*SVTDPVFILEIPLA Trigger: AGCCAATGGAATTTCCAGAATAAAAACAGGATCAGTCACACTCCACACGCAGACTGCTATACATTTTGCTGAACAGCTAGCAAAGGCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS GCA 90 bp | GTAAATTTGGCCTTTGCTAGCTGTTCAGCAAAATGTATAGCAGTCTaGGTGTGGAGTGTGACTGATCCTGTTTTTATTCTGGAAATTCCA | + |
|
Preference number: 5 (lower is better) Translates to: VNLAFASCSAKCIAV*VWSVTDPVFILEIP Trigger: TGGAATTTCCAGAATAAAAACAGGATCAGTCACACTCCACACGCAGACTGCTATACATTTTGCTGAACAGCTAGCAAAGGCCAAATTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS-3UTR CAA 90 bp | GACTATTACACATATTCATTACGTTTGATCGTTCACTGTCTATATCTGGGGAGATTCTTCACGGTAAATTaGGCCTTTGCTAGCTGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: DYYTYSLRLIVHCLYLGRFFTVN*AFASCS Trigger: TGAACAGCTAGCAAAGGCCAAATTTACCGTGAAGAA...TCTCCCCAGATATAGACAGTGAACGATCAAACGTAATGAATATGTGTAATAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS GCA 72 bp | CTGAGGCCCGGCGTGCTGCGGCCCGCGCGGATCTTCTaGACGCGCAAGGGTAGGCCCAGGAGGCAGCTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LRPGVLRPARIF*TRKGRPRRQLR Trigger: CCTGAGCTGCCTCCTGGGCCTACCCTTGCGCGTGCAGAAGATCCGCGCGGGCCGCAGCACGCCGGGCCTCAG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000348.15 ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| CDS CCA 72 bp | AGGAGGCAGCTCAGGGCGGTGGAGACCCTGAGGATCTaGCCGCCCCCTTCCATGATCCCACCGTCCACCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RRQLRAVETLRI*PPPSMIPPSTS Trigger: GGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCCAGATCCTCAGGGTCTCCACCGCCCTGAGCTGCCTCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000348.15 ENSMUST00000140677.8 ENSMUST00000143425.2 |
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| CDS TCA 72 bp | CACAAATCACGAACCATTTCCAGTCCAGATAAATGCTaGGGCCTGAGGCCCGGCGTGCTGCGGCCCGCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: HKSRTISSPDKC*GLRPGVLRPAR Trigger: CCGCGCGGGCCGCAGCACGCCGGGCCTCAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGTGATTTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000348.15 ENSMUST00000143425.2 |
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| CDS CAA 72 bp | GCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATaGAAACCCTGCTGTCTTGGTATCTGCCGTGTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: APTGKPQTGHRA*KPCCLGICRVD Trigger: GTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS CAA 90 bp | TCAGACGGAGCTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATaGAAACCCTGCTGTCTTGGTATCTGCCGTGTGGACTCCACCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SDGAPTGKPQTGHRA*KPCCLGICRVDSTS Trigger: AGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAGCTCCGTCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS TCA 72 bp | CTCCGACGGGGAAGCCGCAAACAGGACACAGGGCATTaGAACCCTGCTGTCTTGGTATCTGCCGTGTGGACT | + |
|
Preference number: 6 (lower is better) Translates to: LRRGSRKQDTGH*NPAVLVSAVWT Trigger: AGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTCGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS GCA 72 bp | GGACACAGGGCATTGAAACCCTGCTGTCTTGGTATCTaGCGTGTGGACTCCACCTCTGATCTTCTCGGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: GHRALKPCCLGI*RVDSTSDLLGG Trigger: ACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS GCA 72 bp | GGGAAGCCGCAAACAGGACACAGGGCATTGAAACCCTaGTGTCTTGGTATCTGCCGTGTGGACTCCACCTCT | + |
|
Preference number: 6 (lower is better) Translates to: GKPQTGHRALKP*CLGICRVDSTS Trigger: AGAGGTGGAGTCCACACGGCAGATACCAAGACAGCAGGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143425.2 |
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| CDS GCA 72 bp | GCCTTTGCTAGCTGTTCAGCAAAATGTATAGCAGTCTaGGTGTGGAGTGTGACTGATCCTGTTTTTATTCTG | + |
|
Preference number: 6 (lower is better) Translates to: AFASCSAKCIAV*VWSVTDPVFIL Trigger: CAGAATAAAAACAGGATCAGTCACACTCCACACGCAGACTGCTATACATTTTGCTGAACAGCTAGCAAAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS CAA 72 bp | TTCGCTAATAGCATTTCAGCAGCTTCAATCCCAACCTaGTCTGCATTCACACCTCTTTTGCCAAGTGATGAT | + |
|
Preference number: 6 (lower is better) Translates to: FANSISAASIPT*SAFTPLLPSDD Trigger: ATCATCACTTGGCAAAAGAGGTGTGAATGCAGACAAGGTTGGGATTGAAGCTGCTGAAATGCTATTAGCGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS CAA 90 bp | TGCGTGTGGAGTGTGACTGATCCTGTTTTTATTCTGGAAATTCCATaGGCTAGCGCCATGAAAATAATCAGCTGGTCTTGTAGATACTCA | + |
|
Preference number: 6 (lower is better) Translates to: CVWSVTDPVFILEIP*ASAMKIISWSCRYS Trigger: TGAGTATCTACAAGACCAGCTGATTATTTTCATGGCGCTAGCCAATGGAATTTCCAGAATAAAAACAGGATCAGTCACACTCCACACGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS CCA 72 bp | GCTAGCTGTTCAGCAAAATGTATAGCAGTCTGCGTGTaGAGTGTGACTGATCCTGTTTTTATTCTGGAAATT | + |
|
Preference number: 6 (lower is better) Translates to: ASCSAKCIAVCV*SVTDPVFILEI Trigger: AATTTCCAGAATAAAAACAGGATCAGTCACACTCCACACGCAGACTGCTATACATTTTGCTGAACAGCTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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| CDS CAA 72 bp | AGTGTGACTGATCCTGTTTTTATTCTGGAAATTCCATaGGCTAGCGCCATGAAAATAATCAGCTGGTCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: SVTDPVFILEIP*ASAMKIISWSC Trigger: ACAAGACCAGCTGATTATTTTCATGGCGCTAGCCAATGGAATTTCCAGAATAAAAACAGGATCAGTCACACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000348.15 |
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