Pregenerated sensors for RTBDN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048617Ensembl transcript IDs: ENSMUST00000067472.14, ENSMUST00000109740.9, ENSMUST00000121880.8, ENSMUST00000152378.3
Found 114 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTaGGTTCTGGGAATAGAATGTAGATCATCAGGGTCGGCCTGTGTA | + |
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Preference number: 1 (lower is better) Translates to: EDRGHLVGVVSFATM*VLGIECRSSGSACV Trigger: TACACAGGCCGACCCTGATGATCTACATTCTATTCCCAGAACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| 3UTR-3UTR TCA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGAGGAAGAGAGGGAGATaGCTCTGGGTGGCTCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWRKRGR*LWVAPG Trigger: GCCAGGAGCCACCCAGAGTCATCTCCCTCTCTTCCT...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR-3UTR CCA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGACAGGTGGGAGGGCCTaGTTTAGGAAGGAAGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWTGGRA*FRKEGE Trigger: CTCTCCTTCCTTCCTAAACCAGGCCCTCCCACCTGT...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR-3UTR TCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCAGGAAGAGAGGGAGATaGCTCTGGGTGGCTCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: LRLSLLPSSPQVFSQAAARKRGR*LWVAPG Trigger: GCCAGGAGCCACCCAGAGTCATCTCCCTCTCTTCCT...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR-3UTR CCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAACAGGTGGGAGGGCCTaGTTTAGGAAGGAAGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: CCQVLPRCFPKQQPCRMATGGRA*FRKEGE Trigger: CTCTCCTTCCTTCCTAAACCAGGCCCTCCCACCTGT...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR-3UTR TCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTAGGAAGAGAGGGAGATaGCTCTGGGTGGCTCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSRKRGR*LWVAPG Trigger: GCCAGGAGCCACCCAGAGTCATCTCCCTCTCTTCCT...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| 3UTR-3UTR TCA 90 bp | AAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGGAAGAGAGGGAGATaGCTCTGGGTGGCTCCTGGC | + |
|
Preference number: 2 (lower is better) Translates to: KPGGQRPSCWSCFFCYHVRKRGR*LWVAPG Trigger: GCCAGGAGCCACCCAGAGTCATCTCCCTCTCTTCCT...CACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACACAGGTGGGAGGGCCTaGTTTAGGAAGGAAGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: QGKPGGQRPSCWSCFFCYTGGRA*FRKEGE Trigger: CTCTCCTTCCTTCCTAAACCAGGCCCTCCCACCTGT...GTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| 3UTR CAA 90 bp | GTGTACCGCGTTGCTAGTCTCCATTCTTCCCTAAGACTATCATTGTaGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCG | + |
|
Preference number: 2 (lower is better) Translates to: VYRVASLHSSLRLSL*PSSPQVFSQAAAMS Trigger: CGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGGAGACTAGCAACGCGGTACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR CAA 90 bp | CCTGTGTACCGCGTTGCTAGTCTCCATTCTTCCCTAAGACTATCATaGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATG | + |
|
Preference number: 2 (lower is better) Translates to: PVYRVASLHSSLRLS*LPSSPQVFSQAAAM Trigger: CATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGGAGACTAGCAACGCGGTACACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR-3UTR CCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAACAGGTGGGAGGGCCTaGTTTAGGAAGGAAGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPTGGRA*FRKEGE Trigger: CTCTCCTTCCTTCCTAAACCAGGCCCTCCCACCTGT...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| 3UTR TCA 72 bp | GGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTaGGTTCTGGGAATAGAATGTAGATCATCAGGGTCG | + |
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Preference number: 3 (lower is better) Translates to: GHLVGVVSFATM*VLGIECRSSGS Trigger: CGACCCTGATGATCTACATTCTATTCCCAGAACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR TCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCGGTAGAACCGAGGACTaGGGGTGCCCTGCCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGGRTED*GCPAGC Trigger: GCAGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACC...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCGGACTGAGGGTGCCCTaGCGGCTGCAGCTGGCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGGLRVP*RLQLAC Trigger: ACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCC...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | GCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTTCTGGGCAGAGAGGCTaGACTGGGCGTGCCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: AKFSPGVFPSSSHVVWHGSGQRG*TGRAPK Trigger: CTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGA...ACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR TCA 90 bp | CAGCAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCGGTAGAACCGAGGACTaGGGGTGCCCTGCCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QQPCRMAWSRLATLFWGSGRTED*GCPAGC Trigger: GCAGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACC...GCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR TCA 90 bp | GCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGTCTGCAGTGGGTaGCTCCATCCACAGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: AKFSPGVFPSSSHVVWHGLVCSG*LHPQAT Trigger: GGTGGCCTGTGGATGGAGTCACCCACTGCAGACTAG...ACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | CAGGGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACGGACTGAGGGTGCCCTaGCGGCTGCAGCTGGCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QGKPGGQRPSCWSCFFCYGLRVP*RLQLAC Trigger: ACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCC...GTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAAGGTCTGCCCATAGGTaGGGCAGCTGGGCTCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMARSAHR*GSWAHS Trigger: GCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCT...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CCA 90 bp | GCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCATAGGTGCGGCAGCTaGGCTCACAGCCTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: AKFSPGVFPSSSHVVWHGHRCGS*AHSLSL Trigger: GAGAGAGAGGCTGTGAGCCCAGCTGCCGCACCTATG...ACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR TCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCGAGACGTTGAGGCAGTaGCTGGAACCTGGAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGETLRQ*LEPGAA Trigger: AGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTC...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | GGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGGACTGAGGGTGCCCTaGCGGCTGCAGCTGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: GKPGGQRPSCWSCFFCYHGLRVP*RLQLAC Trigger: ACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCC...ATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCTCTGGGCAGAGAGGCTaGACTGGGCGTGCCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAASGQRG*TGRAPK Trigger: CTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGA...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CCA 90 bp | GCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTAATCTGGCAGAGCTCTaGGCAGAGAGGCTGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: AKFSPGVFPSSSHVVWHGNLAEL*AERLHW Trigger: CCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAGATT...ACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR TCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCAGGAGATGGAGACGTTaGGGCAGTGACTGGAACCTG | + |
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Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGRRWRR*GSDWNL Trigger: CAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCT...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAATCTGGGCAGAGAGGCTaGACTGGGCGTGCCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: QPCRMAWSRLATLFWGSKSGQRG*TGRAPK Trigger: CTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGA...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAACTGGAACCTGGAGCTaGTACCCGCAGGACATGACC | + |
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Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMATGTWS*YPQDMT Trigger: GGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGT...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAAATCTGGCAGAGCTCTaGGCAGAGAGGCTGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMANLAEL*AERLHW Trigger: CCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAGATT...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR TCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAAGGAGATGGAGACGTTaGGGCAGTGACTGGAACCTG | + |
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Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMARRWRR*GSDWNL Trigger: CAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCT...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | GGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATAGGTCTGCCCATAGGTaGGGCAGCTGGGCTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: GKPGGQRPSCWSCFFCYHRSAHR*GSWAHS Trigger: GCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCT...ATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCTGTCGCCGCTGCCGCTaGCACTACCACTGCCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAACRRCR*HYHCLQ Trigger: TTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACA...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CCA 90 bp | CAGGGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATAGGTGCGGCAGCTaGGCTCACAGCCTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QGKPGGQRPSCWSCFFCYHRCGS*AHSLSL Trigger: GAGAGAGAGGCTGTGAGCCCAGCTGCCGCACCTATG...GTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR CCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCCATAGGTGCGGCAGCTaGGCTCACAGCCTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAAHRCGS*AHSLSL Trigger: GAGAGAGAGGCTGTGAGCCCAGCTGCCGCACCTATG...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR TCA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATCTAGTCTGCAGTGGGTaGCTCCATCCACAGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHLVCSG*LHPQAT Trigger: GGTGGCCTGTGGATGGAGTCACCCACTGCAGACTAG...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR TCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCGAGACGTTGAGGCAGTaGCTGGAACCTGGAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAAETLRQ*LEPGAA Trigger: AGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTC...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCTGGTCTGTCTATCTCTaGAGTACAGCAAGGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGWSVYL*STARHW Trigger: CCAGTGCCTTGCTGTACTGCAGAGATAGACAGACCA...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAATCTGGGCAGAGAGGCTaGACTGGGCGTGCCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQSGQRG*TGRAPK Trigger: CTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGA...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGGTCTGCCCATAGGTaGGGCAGCTGGGCTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPRSAHR*GSWAHS Trigger: GCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCT...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR GCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTTGTCGCCGCTGCCGCTaGCACTACCACTGCCTACAA | + |
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Preference number: 4 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSCRRCR*HYHCLQ Trigger: TTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACA...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR GCA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATTGTCGCCGCTGCCGCTaGCACTACCACTGCCTACAA | + |
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Preference number: 4 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHCRRCR*HYHCLQ Trigger: TTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACA...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCAATCTGGCAGAGCTCTaGGCAGAGAGGCTGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAANLAEL*AERLHW Trigger: CCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAGATT...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR TCA 90 bp | CAGGGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCTGCTTGGCAGGTGGTaGACCAAATCTGGCAGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: QGKPGGQRPSCWSCFFCYLLGRW*TKSGRA Trigger: AGCTCTGCCAGATTTGGTTCACCACCTGCCAAGCAG...GTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR TCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTGAGACGTTGAGGCAGTaGCTGGAACCTGGAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSETLRQ*LEPGAA Trigger: AGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTC...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR GCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAAGGTCTGCCCATAGGTaGGGCAGCTGGGCTCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQRSAHR*GSWAHS Trigger: GCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCT...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | GGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATACTGGAACCTGGAGCTaGTACCCGCAGGACATGACC | + |
|
Preference number: 4 (lower is better) Translates to: GKPGGQRPSCWSCFFCYHTGTWS*YPQDMT Trigger: GGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGT...ATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR GCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTACTGGAACCTGGAGCTaGTACCCGCAGGACATGACC | + |
|
Preference number: 4 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSTGTWS*YPQDMT Trigger: GGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGT...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR GCA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGCGCTGCCACTACCACTaGCTACAACATTTGAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWRCHYH*LQHLKS Trigger: GGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCG...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCACATAGGTGCGGCAGCTaGGCTCACAGCCTCTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPHRCGS*AHSLSL Trigger: GAGAGAGAGGCTGTGAGCCCAGCTGCCGCACCTATG...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR TCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAGAGACGTTGAGGCAGTaGCTGGAACCTGGAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPETLRQ*LEPGAA Trigger: AGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTC...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR TCA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATAGGAGATGGAGACGTTaGGGCAGTGACTGGAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHRRWRR*GSDWNL Trigger: CAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCT...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR TCA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAAAGGAGATGGAGACGTTaGGGCAGTGACTGGAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: QPCRMAWSRLATLFWGSKRRWRR*GSDWNL Trigger: CAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCT...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | TTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGTCTAGGCGCCACAAATAAAATCTaGTTGGCAGGTGGTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: FSPGVFPSSSHVVWHGLGATNKI*LAGGEP Trigger: TGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGC...GCCTAGACCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGGCCACAAATAAAATCTaGTTGGCAGGTGGTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWATNKI*LAGGEP Trigger: TGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGC...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCACGCTGCCACTACCACTaGCTACAACATTTGAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMARCHYH*LQHLKS Trigger: GGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCG...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGTGAGCCAGGAACTTaGATCCTTGGGTATGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMACEPGT*ILGYDG Trigger: ACCATCATACCCAAGGATCCAAGTTCCTGGCTCACA...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAACTGGAACCTGGAGCTaGTACCCGCAGGACATGACC | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQTGTWS*YPQDMT Trigger: GGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGT...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAAATCTGGCAGAGCTCTaGGCAGAGAGGCTGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQNLAEL*AERLHW Trigger: CCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAGATT...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| 3UTR CAA 72 bp | GTGTCAGGGCAAACCTGGAGGACAGAGGCCATCTTGTaGGAGTTGTTTCTTTTGCTACCATGTGAGTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VSGQTWRTEAIL*ELFLLLPCEFW Trigger: CCAGAACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCCCTGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR GCA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCCGCTGCCACTACCACTaGCTACAACATTTGAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: LRLSLLPSSPQVFSQAAARCHYH*LQHLKS Trigger: GGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCG...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | AAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGGAAGAATTCACATTCTaGGCTTGGTGCCCCGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: KPGGQRPSCWSCFFCYHVEEFTF*AWCPAA Trigger: AGCTGCGGGGCACCAAGCCCAGAATGTGAATTCTTC...CACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| 3UTR CAA 72 bp | CGCGTTGCTAGTCTCCATTCTTCCCTAAGACTATCATaGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RVASLHSSLRLS*LPSSPQVFSQA Trigger: TGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGGAGACTAGCAACGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCATGGTCTGTCTATCTCTaGAGTACAGCAAGGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPWSVYL*STARHW Trigger: CCAGTGCCTTGCTGTACTGCAGAGATAGACAGACCA...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTTGTGAGCCAGGAACTTaGATCCTTGGGTATGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSCEPGT*ILGYDG Trigger: ACCATCATACCCAAGGATCCAAGTTCCTGGCTCACA...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR CCA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATTGTGAGCCAGGAACTTaGATCCTTGGGTATGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHCEPGT*ILGYDG Trigger: ACCATCATACCCAAGGATCCAAGTTCCTGGCTCACA...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAATGTGAGCCAGGAACTTaGATCCTTGGGTATGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: QPCRMAWSRLATLFWGSKCEPGT*ILGYDG Trigger: ACCATCATACCCAAGGATCCAAGTTCCTGGCTCACA...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCACAAATAAAATCTGCTTaGCAGGTGGTGAACCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: CCQVLPRCFPKQQPCRMAQIKSA*QVVNQI Trigger: GATTTGGTTCACCACCTGCCAAGCAGATTTTATTTG...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | CCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGAGTGCCACAAATAAAATCTaGTTGGCAGGTGGTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: PGGQRPSCWSCFFCYHVSATNKI*LAGGEP Trigger: TGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGC...ACTCACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS-3UTR GCA 90 bp | AAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGCGCTGCCACTACCACTaGCTACAACATTTGAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: KPGGQRPSCWSCFFCYHVRCHYH*LQHLKS Trigger: GGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCG...CACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| 3UTR CAA 72 bp | GTTGCTAGTCTCCATTCTTCCCTAAGACTATCATTGTaGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: VASLHSSLRLSL*PSSPQVFSQAA Trigger: TGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGGAGACTAGCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCCACAAATAAAATCTaGTTGGCAGGTGGTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQATNKI*LAGGEP Trigger: TGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGC...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAACAAATAAAATCTGCTTaGCAGGTGGTGAACCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: QPCRMAWSRLATLFWGSKQIKSA*QVVNQI Trigger: GATTTGGTTCACCACCTGCCAAGCAGATTTTATTTG...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR GCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGGAAATTCTATCAGCTaGTTTCCCAGAGAGAAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQGNSIS*FPREKS Trigger: GCTTTTCTCTCTGGGAAAGCAGCTGATAGAATTTCC...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCACAAATAAAATCTGCTTaGCAGGTGGTGAACCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPQIKSA*QVVNQI Trigger: GATTTGGTTCACCACCTGCCAAGCAGATTTTATTTG...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS-3UTR CCA 90 bp | CATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAACAAATAAAATCTGCTTaGCAGGTGGTGAACCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: HSSLRLSLLPSSPQVFSQQIKSA*QVVNQI Trigger: GATTTGGTTCACCACCTGCCAAGCAGATTTTATTTG...TTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS GCA 90 bp | CTGAGGGTGCCCTGCCGGCTGCAGCTGGCCTGTGCGCACCTTGGCTaGCAGTCCAGGGTGTCCCCAGGACCTAGTCTGCAGTGGGTGACT | + |
|
Preference number: 5 (lower is better) Translates to: LRVPCRLQLACAHLG*QSRVSPGPSLQWVT Trigger: AGTCACCCACTGCAGACTAGGTCCTGGGGACACCCTGGACTGGCAGCCAAGGTGCGCACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS TCA 90 bp | GGGGCTGTCGCCGCTGCCGCTGCCACTACCACTGCCTACAACATTTaGAATCCAGGCACGAGGGCGGCGGCGCGCTCCTGGAGAGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: GAVAAAAATTTAYNI*NPGTRAAARSWRGD Trigger: ATCTCCTCTCCAGGAGCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACAGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS GCA 90 bp | CAAACATTGGCTCGGGGCTGTCGCCGCTGCCGCTGCCACTACCACTaGCTACAACATTTGAAATCCAGGCACGAGGGCGGCGGCGCGCTC | + |
|
Preference number: 5 (lower is better) Translates to: QTLARGCRRCRCHYH*LQHLKSRHEGGGAL Trigger: GAGCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACAGCCCCGAGCCAATGTTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS TCA 90 bp | GAGCCAGGAACTTGGATCCTTGGGTATGATGGTAGAACCGAGGACTaGGGGTGCCCTGCCGGCTGCAGCTGGCCTGTGCGCACCTTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: EPGTWILGYDGRTED*GCPAGCSWPVRTLA Trigger: AGCCAAGGTGCGCACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATCCAAGTTCCTGGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
||
| CDS CCA 90 bp | CCCGCAGGACATGACCCAAAACAGAGTGACACAGATCTGTGGCGTTaGCGAAGGTCTGCCCATAGGTGCGGCAGCTGGGCTCACAGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: PAGHDPKQSDTDLWR*RRSAHRCGSWAHSL Trigger: GAGGCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCTTCGCCAACGCCACAGATCTGTGTCACTCTGTTTTGGGTCATGTCCTGCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
||
| CDS CCA 90 bp | CTGCTACCCGCAGGACATGACCCAAAACAGAGTGACACAGATCTGTaGCGTTGGCGAAGGTCTGCCCATAGGTGCGGCAGCTGGGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: LLPAGHDPKQSDTDL*RWRRSAHRCGSWAH Trigger: GTGAGCCCAGCTGCCGCACCTATGGGCAGACCTTCGCCAACGCCACAGATCTGTGTCACTCTGTTTTGGGTCATGTCCTGCGGGTAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CCA 90 bp | GTCGGGCCACAAATAAAATCTGCTTGGCAGGTGGTGAACCAAATCTaGCAGAGCTCTGGGCAGAGAGGCTGCACTGGGCGTGCCCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VGPQIKSAWQVVNQI*QSSGQRGCTGRAPK Trigger: CTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAGATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGCCCGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CCA 90 bp | CGCTCCTGGAGAGGAGATGGAGACGTTGAGGCAGTGACTGGAACCTaGAGCTGCTACCCGCAGGACATGACCCAAAACAGAGTGACACAG | + |
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Preference number: 5 (lower is better) Translates to: RSWRGDGDVEAVTGT*SCYPQDMTQNRVTQ Trigger: CTGTGTCACTCTGTTTTGGGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCTCTCCAGGAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGATTCACATTCTGGGCTaGGTGCCCCGCAGCTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWIHILG*VPRSSL Trigger: TAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAAT...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS GCA 90 bp | TGGAGAGGAGATGGAGACGTTGAGGCAGTGACTGGAACCTGGAGCTaGTACCCGCAGGACATGACCCAAAACAGAGTGACACAGATCTGT | + |
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Preference number: 5 (lower is better) Translates to: WRGDGDVEAVTGTWS*YPQDMTQNRVTQIC Trigger: ACAGATCTGTGTCACTCTGTTTTGGGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCTCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | TGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCATGGGGGAAGGGACACGTATaGAAAGCCAAACATTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: CQVLPRCFPKQQPCRMAWGKGHV*KAKHWL Trigger: GAGCCAATGTTTGGCTTTCAATACGTGTCCCTTCCC...CCATGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | CTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATTCACATTCTGGGCTaGGTGCCCCGCAGCTCTCTA | + |
|
Preference number: 5 (lower is better) Translates to: LRLSLLPSSPQVFSQAAAIHILG*VPRSSL Trigger: TAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAAT...GGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | TGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGTCGTATGGCAGGGAAGGGACACGTATaGAAAGCCAAACATTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: CCQVLPRCFPKQQPCRMAGKGHV*KAKHWL Trigger: GAGCCAATGTTTGGCTTTCAATACGTGTCCCTTCCC...TGCCATACGACATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAAATTCACATTCTGGGCTaGGTGCCCCGCAGCTCTCTA | + |
|
Preference number: 5 (lower is better) Translates to: QPCRMAWSRLATLFWGSKIHILG*VPRSSL Trigger: TAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAAT...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | AAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATGTGATTCACATTCTGGGCTaGGTGCCCCGCAGCTCTCTA | + |
|
Preference number: 5 (lower is better) Translates to: KPGGQRPSCWSCFFCYHVIHILG*VPRSSL Trigger: TAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAAT...CACATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAGGGCTCCTTGAAGTaGTCCCAGGAAGAATTCACA | + |
|
Preference number: 5 (lower is better) Translates to: QQPCRMAWSRLATLFWGSKGSLK*SQEEFT Trigger: TGTGAATTCTTCCTGGGACAACTTCAAGGAGCCCTT...GCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATGGGAAGGGACACGTATaGAAAGCCAAACATTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHGKGHV*KAKHWL Trigger: GAGCCAATGTTTGGCTTTCAATACGTGTCCCTTCCC...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAGGGAAGGGACACGTATaGAAAGCCAAACATTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPGKGHV*KAKHWL Trigger: GAGCCAATGTTTGGCTTTCAATACGTGTCCCTTCCC...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | CAGCCATGTCGTATGGCATGGTCTAGGCTGGCAACTTTATTTTGGGGAAGCAAAACAAATAAAATCTGCTaGGCAGGTGGTGAACCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: QPCRMAWSRLATLFWGSKTNKIC*AGGEPN Trigger: ATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGT...TTTGCTTCCCCAAAATAAAGTTGCCAGCCTAGACCATGCCATACGACATGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | GGCAAACCTGGAGGACAGAGGCCATCTTGTTGGAGTTGTTTCTTTTGCTACCATACAAATAAAATCTGCTaGGCAGGTGGTGAACCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: GKPGGQRPSCWSCFFCYHTNKIC*AGGEPN Trigger: ATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGT...ATGGTAGCAAAAGAAACAACTCCAACAAGATGGCCTCTGTCCTCCAGGTTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS-3UTR CAA 90 bp | AAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAAGCAGCAGCCATACAAATAAAATCTGCTaGGCAGGTGGTGAACCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: KTIIVAKFSPGVFPSSSHTNKIC*AGGEPN Trigger: ATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGT...ATGGCTGCTGCTTGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS-3UTR CAA 90 bp | CCATTCTTCCCTAAGACTATCATTGTTGCCAAGTTCTCCCCAGGTGTTTTCCCAACAAATAAAATCTGCTaGGCAGGTGGTGAACCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: PFFPKTIIVAKFSPGVFPTNKIC*AGGEPN Trigger: ATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGT...TGGGAAAACACCTGGGGAGAACTTGGCAACAATGATAGTCTTAGGGAAGAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 90 bp | CGGGGCTGTCGCCGCTGCCGCTGCCACTACCACTGCCTACAACATTaGAAATCCAGGCACGAGGGCGGCGGCGCGCTCCTGGAGAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: RGCRRCRCHYHCLQH*KSRHEGGGALLERR Trigger: TCTCCTCTCCAGGAGCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACAGCCCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS TCA 72 bp | GCCGCTGCCGCTGCCACTACCACTGCCTACAACATTTaGAATCCAGGCACGAGGGCGGCGGCGCGCTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: AAAAATTTAYNI*NPGTRAAARSW Trigger: CCAGGAGCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 72 bp | CGCCGCTGCCGCTGCCACTACCACTGCCTACAACATTaGAAATCCAGGCACGAGGGCGGCGGCGCGCTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RRCRCHYHCLQH*KSRHEGGGALL Trigger: CAGGAGCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS GCA 72 bp | GCTCGGGGCTGTCGCCGCTGCCGCTGCCACTACCACTaGCTACAACATTTGAAATCCAGGCACGAGGGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: ARGCRRCRCHYH*LQHLKSRHEGG Trigger: GCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACAGCCCCGAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CCA 72 bp | GCAGAGAGGCTGCACTGGGCGTGCCCCGAAGAGCTGTaGGTGGAAGCGATCGCGAAGGGCTCCTTGAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: AERLHWACPEEL*VEAIAKGSLKL Trigger: CAACTTCAAGGAGCCCTTCGCGATCGCTTCCACCCACAGCTCTTCGGGGCACGCCCAGTGCAGCCTCTCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS TCA 72 bp | ACTTGGATCCTTGGGTATGATGGTAGAACCGAGGACTaGGGGTGCCCTGCCGGCTGCAGCTGGCCTGTGCGC | + |
|
Preference number: 6 (lower is better) Translates to: TWILGYDGRTED*GCPAGCSWPVR Trigger: GCGCACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATCCAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS CCA 72 bp | TGCCAGTCCAGGGTGTCCCCAGGACCTAGTCTGCAGTaGGTGACTCCATCCACAGGCCACCAAGAAGATCCA | + |
|
Preference number: 6 (lower is better) Translates to: CQSRVSPGPSLQ*VTPSTGHQEDP Trigger: TGGATCTTCTTGGTGGCCTGTGGATGGAGTCACCCACTGCAGACTAGGTCCTGGGGACACCCTGGACTGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS CAA 90 bp | AAGGCACTGGCACTGGTGGTGTCTGTGAGCCAGGAACTTGGATCCTaGGGTATGATGGTAGAACCGAGGACTGAGGGTGCCCTGCCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: KALALVVSVSQELGS*GMMVEPRTEGALPA Trigger: AGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATCCAAGTTCCTGGCTCACAGACACCACCAGTGCCAGTGCCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 |
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| CDS CAA 90 bp | CCCGAAGAGCTGTGGGTGGAAGCGATCGCGAAGGGCTCCTTGAAGTaGTCCCAGGAAGAATTCACATTCTGGGCTTGGTGCCCCGCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: PEELWVEAIAKGSLK*SQEEFTFWAWCPAA Trigger: AGCTGCGGGGCACCAAGCCCAGAATGTGAATTCTTCCTGGGACAACTTCAAGGAGCCCTTCGCGATCGCTTCCACCCACAGCTCTTCGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 90 bp | AAGGCACTGGCACTGGTGGTGTCTGTGAGCCAGGAACTTGGATCCTaGGGTATGATGGTAGAACCGAGGACTGAGGGTGCCCTGACAACG | + |
|
Preference number: 6 (lower is better) Translates to: KALALVVSVSQELGS*GMMVEPRTEGALTT Trigger: CGTTGTCAGGGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATCCAAGTTCCTGGCTCACAGACACCACCAGTGCCAGTGCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152378.3 |
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| CDS CAA 72 bp | GCACTGGTGGTGTCTGTGAGCCAGGAACTTGGATCCTaGGGTATGATGGTAGAACCGAGGACTGAGGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: ALVVSVSQELGS*GMMVEPRTEGA Trigger: GGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATCCAAGTTCCTGGCTCACAGACACCACCAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 90 bp | CTCTCCAGAGGACTGCAGCCAAGTCGGGCCACAAATAAAATCTGCTaGGCAGGTGGTGAACCAAATCTGGCAGAGCTCTGGGCAGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LSRGLQPSRATNKIC*AGGEPNLAELWAER Trigger: CCTCTCTGCCCAGAGCTCTGCCAGATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGCCCGACTTGGCTGCAGTCCTCTGGAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS GCA 72 bp | GATGGAGACGTTGAGGCAGTGACTGGAACCTGGAGCTaGTACCCGCAGGACATGACCCAAAACAGAGTGACA | + |
|
Preference number: 6 (lower is better) Translates to: DGDVEAVTGTWS*YPQDMTQNRVT Trigger: TGTCACTCTGTTTTGGGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CCA 72 bp | AGAGGAGATGGAGACGTTGAGGCAGTGACTGGAACCTaGAGCTGCTACCCGCAGGACATGACCCAAAACAGA | + |
|
Preference number: 6 (lower is better) Translates to: RGDGDVEAVTGT*SCYPQDMTQNR Trigger: TCTGTTTTGGGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CCA 72 bp | GACTGCAGCCAAGTCGGGCCACAAATAAAATCTGCTTaGCAGGTGGTGAACCAAATCTGGCAGAGCTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: DCSQVGPQIKSA*QVVNQIWQSSG Trigger: CCCAGAGCTCTGCCAGATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGCCCGACTTGGCTGCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 72 bp | CTTGAAGTTGTCCCAGGAAGAATTCACATTCTGGGCTaGGTGCCCCGCAGCTCTCTAGAAGGCTCTCTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: LEVVPGRIHILG*VPRSSLEGSLV Trigger: GACCAGAGAGCCTTCTAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAATTCTTCCTGGGACAACTTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS CAA 72 bp | GAAGAGCTGTGGGTGGAAGCGATCGCGAAGGGCTCCTaGAAGTTGTCCCAGGAAGAATTCACATTCTGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: EELWVEAIAKGS*KLSQEEFTFWA Trigger: AGCCCAGAATGTGAATTCTTCCTGGGACAACTTCAAGGAGCCCTTCGCGATCGCTTCCACCCACAGCTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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| CDS TCA 72 bp | AAGAGCTGTGGGTGGAAGCGATCGCGAAGGGCTCCTTaGAGTTGTCCCAGGAAGAATTCACATTCTGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: KSCGWKRSRRAP*SCPRKNSHSGL Trigger: AAGCCCAGAATGTGAATTCTTCCTGGGACAACTTCAAGGAGCCCTTCGCGATCGCTTCCACCCACAGCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000067472.14 ENSMUST00000109740.9 ENSMUST00000121880.8 ENSMUST00000152378.3 |
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