Pregenerated sensors for RSU1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026727Ensembl transcript IDs: ENSMUST00000028059.9, ENSMUST00000114791.9, ENSMUST00000134551.8, ENSMUST00000137670.3, ENSMUST00000191959.6
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTTCTTTAAACAAGAAAAGTAGGCACCAGCACGCTGTATTCATTTaGAGGACAGAGCAAGAAGGCCGGAGGAAGGAGGCCAGAAACCAG | + |
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Preference number: 1 (lower is better) Translates to: FSLNKKSRHQHAVFI*RTEQEGRRKEARNQ Trigger: CTGGTTTCTGGCCTCCTTCCTCCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTTGTTTAAAGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR-3UTR CCA 90 bp | GCCGGGAGGGAGCCGAATCCTCGAGGCAGCGTGTTCAACCTATTCATGCCAAGGTGGAGGCTGCTGATCTaGGTAGGCAGTTCCTCGATC | + |
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Preference number: 2 (lower is better) Translates to: AGREPNPRGSVFNLFMPRWRLLI*VGSSSI Trigger: GATCGAGGAACTGCCTACCCAGATCAGCAGCCTCCA...CCTTGGCATGAATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTCCCGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR CCA 90 bp | GGACCTCCAGAGCCGGGAGGGAGCCGAATCCTCGAGGCAGCGTGTTCAACCTATTTCCGCTACATTTGGTaGCACAGTTTCATGGCTAAA | + |
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Preference number: 2 (lower is better) Translates to: GPPEPGGSRILEAACSTYFRYIW*HSFMAK Trigger: TTTAGCCATGAAACTGTGCCACCAAATGTAGCGGAA...ATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTCCCGGCTCTGGAGGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR CCA 90 bp | CATTCAGGTTGTTGTAAGTTAAGTCCAGGACCTCCAGAGCCGGGAGGGAGCCGACAGTTCCGCTACATTTaGTGGCACAGTTTCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: HSGCCKLSPGPPEPGGSRQFRYI*WHSFMA Trigger: AGCCATGAAACTGTGCCACCAAATGTAGCGGAACTG...TCGGCTCCCTCCCGGCTCTGGAGGTCCTGGACTTAACTTACAACAACCTGAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGGAGCCGAATCCTCGAGGCAGCGTGTTCAACCTATTCATGCCAAGGTTCAGGGCAGTTCCTCGATCTaGTTGTTGAAGAAGTTTAGT | + |
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Preference number: 2 (lower is better) Translates to: EGAESSRQRVQPIHAKVQGSSSI*LLKKFS Trigger: ACTAAACTTCTTCAACAATCAGATCGAGGAACTGCC...CTGAACCTTGGCATGAATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCGAGGCAGCGTGTTCAACCTATTCATGCCAAGGTTCAGGTGTTTGAGTTTCGGTGGCACAGTTTCATaGCTAAAAATTCTTGACCAG | + |
|
Preference number: 2 (lower is better) Translates to: PRGSVFNLFMPRFRCLSFGGTVS*LKILDQ Trigger: CTGGTCAAGAATTTTTAGCCATGAAACTGTGCCACC...GAAACTCAAACACCTGAACCTTGGCATGAATAGGTTGAACACGCTGCCTCGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAATGTTCATTCAGGTTGTTGTAAGTTAAGTCCAGGACCTCCAGAGCCGGGAGTGTTTCCTCTTGTCTaGTTAGATCAAACTACCTGG | + |
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Preference number: 2 (lower is better) Translates to: ENVHSGCCKLSPGPPEPGVFPLV*LDQTTW Trigger: CCAGGTAGTTTGATCTAATCAGACAAGAGGAAACAC...TCCCGGCTCTGGAGGTCCTGGACTTAACTTACAACAACCTGAATGAACATTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR-3UTR GCA 90 bp | ATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCCACGCTGTATTCATTTaGAGGACAGAGCAAGAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: IKTAPPTTSISKVQKSGCHAVFI*RTEQEG Trigger: GCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTG...GCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR-3UTR GCA 90 bp | TTTATTCAAGGGACTGAAACCTGTGCCTACCATGGAATTTGCAGGAGAATGAGACAAGTATTTCAAAGGTaGAAAAGTCAGGCTGCGTTC | + |
|
Preference number: 2 (lower is better) Translates to: FIQGTETCAYHGICRRMRQVFQR*KSQAAF Trigger: GAACGCAGCCTGACTTTTGCACCTTTGAAATACTTG...TCTCATTCTCCTGCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR-3UTR GCA 90 bp | AATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAACCAGTGTGTGTGTCTaGTCCTCATTTGTTCTTGGC | + |
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Preference number: 2 (lower is better) Translates to: NVRLYKNGTTYHKYFKGATSVCV*SSFVLG Trigger: GCCAAGAACAAATGAGGAGCAGACACACACACTGGT...TGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191959.6 |
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| 3UTR-3UTR CAA 90 bp | GAATCCTCGAGGCAGCGTGTTCAACCTATTCATGCCAAGGTTCAGGTGTTTGAGTCAGTTCCGCTACATTaGGTGGCACAGTTTCATGGC | + |
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Preference number: 3 (lower is better) Translates to: ESSRQRVQPIHAKVQVFESVPLH*VAQFHG Trigger: GCCATGAAACTGTGCCACCAAATGTAGCGGAACTGA...CTCAAACACCTGAACCTTGGCATGAATAGGTTGAACACGCTGCCTCGAGGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR GCA 72 bp | CCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTaGGTTCAAGCACCGGGAGGAGAAAGGGAAAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: PTTSISKVQKSG*VQAPGGEREKD Trigger: ATCCTTTTCCCTTTCTCCTCCCGGTGCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR-3UTR CAA 90 bp | TTTATTCAAGGGACTGAAACCTGTGCCTACCATGGAATTTGCAGGAGAATGAGAGCACGCTGTATTCATTaGCAGGACAGAGCAAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: FIQGTETCAYHGICRRMRARCIH*QDRARR Trigger: CCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGC...TCTCATTCTCCTGCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR-3UTR CAA 90 bp | AGCCTTGTGACGTTTATTCAAGGGACTGAAACCTGTGCCTACCATGGAATTTGCAGGAGAATGAGAGCTTaGTTTTCTGCCTTTGGCAAT | + |
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Preference number: 3 (lower is better) Translates to: SLVTFIQGTETCAYHGICRRMRA*FSAFGN Trigger: ATTGCCAAAGGCAGAAAACAAAGCTCTCATTCTCCT...GCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAACGTCACAAGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| 3UTR CCA 72 bp | TTCTTCAGTTCCGCTACATTTGGTGGCACAGTTTCATaGCTAAAAATTCTTGACCAGGTGGAACGGAAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: FFSSATFGGTVS*LKILDQVERKC Trigger: ACACTTCCGTTCCACCTGGTCAAGAATTTTTAGCCATGAAACTGTGCCACCAAATGTAGCGGAACTGAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| 3UTR TCA 72 bp | CTGAAACCTGTGCCTACCATGGAATTTGCAGGAGAATaGGAGCTTTGTTTTCTGCCTTTGGCAATTTTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: LKPVPTMEFAGE*ELCFLPLAILR Trigger: CCTTAAAATTGCCAAAGGCAGAAAACAAAGCTCTCATTCTCCTGCAAATTCCATGGTAGGCACAGGTTTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| 3UTR TCA 72 bp | GATAATAAGCAGCCTTGTGACGTTTATTCAAGGGACTaGAACCTGTGCCTACCATGGAATTTGCAGGAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: DNKQPCDVYSRD*NLCLPWNLQEN Trigger: ATTCTCCTGCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAACGTCACAAGGCTGCTTATTATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| 3UTR-3UTR CAA 90 bp | TTAAGGAAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACGCACGCTGTATTCATTaGCAGGACAGAGCAAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: LRKQMRRNVRLYKNGTTYARCIH*QDRARR Trigger: CCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGC...GTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTTCCTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | GCCGGGAGGGAGCCGAATCCTCGAGGCAGCGTGTTCAACCTATTCATGCCAAGGATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: AGREPNPRGSVFNLFMPRMSTSG*FFSLLS Trigger: GGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACAT...CCTTGGCATGAATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTCCCGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| CDS-3UTR TCA 90 bp | AGGACAGAGCAAGAAGGCCGGAGGAAGGAGGCCAGAAACCAGTGTGTGTGTCTGGTGCACGCAGGGTGGTaGGGTAGAAGAAGTTTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: RTEQEGRRKEARNQCVCLVHAGW*GRRSFP Trigger: CGGGAAACTTCTTCTACCTCACCACCCTGCGTGCAC...CAGACACACACACTGGTTTCTGGCCTCCTTCCTCCGGCCTTCTTGCTCTGTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | ACAGAGCAAGAAGGCCGGAGGAAGGAGGCCAGAAACCAGTGTGTGTGTCTGCTCATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TEQEGRRKEARNQCVCLLMSTSG*FFSLLS Trigger: GGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACAT...GAGCAGACACACACACTGGTTTCTGGCCTCCTTCCTCCGGCCTTCTTGCTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | AGTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCCGGAGGATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SRHQHAVFICRTEQEGRRMSTSG*FFSLLS Trigger: GGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACAT...CCTCCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | CACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCACTGGAGCTCCTTCAGCTaGGTCAGCTCCCCGATTTCC | + |
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Preference number: 4 (lower is better) Translates to: HHLPQVFQRCKSQAAFKHWSSFS*VSSPIS Trigger: GGAAATCGGGGAGCTGACCCAGCTGAAGGAGCTCCA...GTGCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | GTGACGTTTATTCAAGGGACTGAAACCTGTGCCTACCATGGAATTTGCAGGAGATGGAGCTCCTTCAGCTaGGTCAGCTCCCCGATTTCC | + |
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Preference number: 4 (lower is better) Translates to: VTFIQGTETCAYHGICRRWSSFS*VSSPIS Trigger: GGAAATCGGGGAGCTGACCCAGCTGAAGGAGCTCCA...TCTCCTGCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAACGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | ATAAGCAGCCTTGTGACGTTTATTCAAGGGACTGAAACCTGTGCCTACCATGGACAAGTTGCCAAGCTCTaGAGGCAGAACGGTCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: ISSLVTFIQGTETCAYHGQVAKL*RQNGQA Trigger: CGCCTGACCGTTCTGCCTCCAGAGCTTGGCAACTTG...TCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAACGTCACAAGGCTGCTTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | GTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCCGGAGGAATATATTCGAAAACGTaGGAGACGCCAAGCTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: VGTSTLYSFAGQSKKAGGIYSKT*ETPSWN Trigger: GTTCCAGCTTGGCGTCTCCCACGTTTTCGAATATAT...TCCTCCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | AGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCCGGAGGAAGGTCGTTATTCTTCTTTaGAGGTTCTGGGTTCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RHQHAVFICRTEQEGRRKVVILL*RFWVRL Trigger: CAAGCGAACCCAGAACCTCCAAAGAAGAATAACGAC...CTTCCTCCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | AGCCTTGTGACGTTTATTCAAGGGACTGAAACCTGTGCCTACCATGGAATTTGCTGGAGGCTGCTGATCTaGGTAGGCAGTTCCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: SLVTFIQGTETCAYHGICWRLLI*VGSSSI Trigger: GATCGAGGAACTGCCTACCCAGATCAGCAGCCTCCA...GCAAATTCCATGGTAGGCACAGGTTTCAGTCCCTTGAATAAACGTCACAAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR GCA 90 bp | GGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCCTGAGGCTGAGTATCTaGAACTTTGTGAGCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: GTTYHKYFKGAKVRLRSSLRLSI*NFVSFP Trigger: TGGGAAGCTCACAAAGTTGCAGATACTCAGCCTCAG...GCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | AACAAGAAAAGTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: NKKSRHQHAVFICRTEQEMSTSG*FFSLLS Trigger: GGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACAT...TTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | ACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAACCAGTTGTGTGATGTaGGCTAGAGAGAACAAGCCG | + |
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Preference number: 4 (lower is better) Translates to: TAPPTTSISKVQKSGCVQTSCVM*ARENKP Trigger: CGGCTTGTTCTCTCTAGCCCACATCACACAACTGGT...TTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028059.9 |
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| CDS-3UTR CCA 90 bp | GGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCCTTCTTTGGAGGTTCTaGGTTCGCTTGCATGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GTTYHKYFKGAKVRLRSSLLWRF*VRLHVS Trigger: AGACACATGCAAGCGAACCCAGAACCTCCAAAGAAG...GCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR TCA 90 bp | AAAAGTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCCGGGGCAGTTCCTCGATCTaGTTGTTGAAGAAGTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: KSRHQHAVFICRTEQEGRGSSSI*LLKKFS Trigger: ACTAAACTTCTTCAACAATCAGATCGAGGAACTGCC...CCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR GCA 90 bp | CACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCACCAGTTAGATCCAAGTTaGCAAGCTCTGGAGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: HHLPQVFQRCKSQAAFKHQLDPS*QALEAE Trigger: TTCTGCCTCCAGAGCTTGGCAACTTGGATCTAACTG...GTGCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | GGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCATATATTCGAAAACGTaGGAGACGCCAAGCTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: GTTYHKYFKGAKVRLRSSIYSKT*ETPSWN Trigger: GTTCCAGCTTGGCGTCTCCCACGTTTTCGAATATAT...GCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR TCA 90 bp | GGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCGGCAGTTCCTCGATCTaGTTGTTGAAGAAGTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: GTTYHKYFKGAKVRLRSSGSSSI*LLKKFS Trigger: ACTAAACTTCTTCAACAATCAGATCGAGGAACTGCC...GCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | AGACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCCAAGTTGCCAAGCTCTaGAGGCAGAACGGTCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RLYKNGTTYHKYFKGAKVQVAKL*RQNGQA Trigger: CGCCTGACCGTTCTGCCTCCAGAGCTTGGCAACTTG...GACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | AGACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCTGGAGGCTGCTGATCTaGGTAGGCAGTTCCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: RLYKNGTTYHKYFKGAKVWRLLI*VGSSSI Trigger: GATCGAGGAACTGCCTACCCAGATCAGCAGCCTCCA...GACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | TATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCTTCTTTGGAGGTTCTaGGTTCGCTTGCATGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: YKNGTTYHKYFKGAKVRLLLWRF*VRLHVS Trigger: AGACACATGCAAGCGAACCCAGAACCTCCAAAGAAG...CAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | AACAAGAAAAGTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGTCGTTATTCTTCTTTaGAGGTTCTGGGTTCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: NKKSRHQHAVFICRTEQEVVILL*RFWVRL Trigger: CAAGCGAACCCAGAACCTCCAAAGAAGAATAACGAC...TTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | AAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGTTCCGCTACATTTGGTaGCACAGACAAGCCGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: KQMRRNVRLYKNGTTYHKFRYIW*HRQAVD Trigger: GTCAACGGCTTGTCTGTGCCACCAAATGTAGCGGAA...CTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114791.9 |
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| CDS-3UTR GCA 90 bp | AAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGCTGAGGCTGAGTATCTaGAACTTTGTGAGCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KQMRRNVRLYKNGTTYHKLRLSI*NFVSFP Trigger: TGGGAAGCTCACAAAGTTGCAGATACTCAGCCTCAG...CTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR GCA 90 bp | AAAGGATTTTCTTTAAACAAGAAAAGTAGGCACCAGCACGCTGTATTCATTTGCCAGTTAGATCCAAGTTaGCAAGCTCTGGAGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: KGFSLNKKSRHQHAVFICQLDPS*QALEAE Trigger: TTCTGCCTCCAGAGCTTGGCAACTTGGATCTAACTG...GCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTTGTTTAAAGAAAATCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CCA 90 bp | AAAGGATTTTCTTTAAACAAGAAAAGTAGGCACCAGCACGCTGTATTCATTTGCCTTCTTTGGAGGTTCTaGGTTCGCTTGCATGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: KGFSLNKKSRHQHAVFICLLWRF*VRLHVS Trigger: AGACACATGCAAGCGAACCCAGAACCTCCAAAGAAG...GCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTTGTTTAAAGAAAATCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CCA 90 bp | GACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGTCGTTATTCTTCTTTaGAGGTTCTGGGTTCGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: DFIKTAPPTTSISKVQKSVVILL*RFWVRL Trigger: CAAGCGAACCCAGAACCTCCAAAGAAGAATAACGAC...TGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | GGACCTCCAGAGCCGGGAGGGAGCCGAATCCTCGAGGCAGCGTGTTCAACCTATGGGGTTGTTAGCTTGTaGTGGCTGAGCACCAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: GPPEPGGSRILEAACSTYGVVSL*WLSTSC Trigger: ACAACTGGTGCTCAGCCACAACAAGCTAACAACCCC...ATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTCCCGGCTCTGGAGGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| CDS-3UTR CAA 90 bp | AGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCCGGAGGAAGGGCACAGTTGTTAGCTaGTTGTGGCTGAGCACCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RHQHAVFICRTEQEGRRKGTVVS*LWLSTS Trigger: ACTGGTGCTCAGCCACAACAAGCTAACAACTGTGCC...CTTCCTCCGGCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028059.9 |
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| CDS CCA 90 bp | TCCAACATACTGGAGATACCCCTGTCACTCATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCCTCCACCAGCTTCTTCAGTGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: SNILEIPLSLMSTSG*FFSLLSSTSFFSDL Trigger: CAAGTCACTGAAGAAGCTGGTGGAGGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACATGAGTGACAGGGGTATCTCCAGTATGTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000134551.8 ENSMUST00000137670.3 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | GGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCCCAGTTAGATCCAAGTaGCCAAGCTCTGGAGGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: GTTYHKYFKGAKVRLRSSPVRSK*PSSGGR Trigger: TCTGCCTCCAGAGCTTGGCAACTTGGATCTAACTGG...GCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CAA 90 bp | AAGAAAAGTAGGCACCAGCACGCTGTATTCATTTGCAGGACAGAGCAAGAAGGCAGGTTCTGGGTTCGCTaGCATGTGTCTGCCGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KKSRHQHAVFICRTEQEGRFWVR*HVSAVE Trigger: CTCTACGGCAGACACATGCAAGCGAACCCAGAACCT...GCCTTCTTGCTCTGTCCTGCAAATGAATACAGCGTGCTGGTGCCTACTTTTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | CACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCAAGCACAGGTTCTGGGTTCGCTaGCATGTGTCTGCCGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: HHLPQVFQRCKSQAAFKHRFWVR*HVSAVE Trigger: CTCTACGGCAGACACATGCAAGCGAACCCAGAACCT...GTGCTTGAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | GAGAATGTTCATTCAGGTTGTTGTAAGTTAAGTCCAGGACCTCCAGAGCCGGGAAGAGGGGTTGTTAGCTaGTTGTGGCTGAGCACCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ENVHSGCCKLSPGPPEPGRGVVS*LWLSTS Trigger: ACTGGTGCTCAGCCACAACAAGCTAACAACCCCTCT...TCCCGGCTCTGGAGGTCCTGGACTTAACTTACAACAACCTGAATGAACATTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| CDS GCA 90 bp | TGTCGTTATTCTTCTTTGGAGGTTCTGGGTTCGCTTGCATGTGTCTaGCGTAGAGGACAAGCCGTTGACATCCAACATACTGGAGATACC | + |
|
Preference number: 5 (lower is better) Translates to: CRYSSLEVLGSLACV*RRGQAVDIQHTGDT Trigger: GGTATCTCCAGTATGTTGGATGTCAACGGCTTGTCCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGAATAACGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191959.6 |
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| CDS CCA 90 bp | GGCACAGTTGTTAGCTTGTTGTGGCTGAGCACCAGTTGTGTGATGTaGGCTAGAGAGAACAAGCCGTTGACATCCAACATACTGGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: GTVVSLLWLSTSCVM*ARENKPLTSNILEI Trigger: TATCTCCAGTATGTTGGATGTCAACGGCTTGTTCTCTCTAGCCCACATCACACAACTGGTGCTCAGCCACAACAAGCTAACAACTGTGCC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000137670.3 |
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| CDS CCA 90 bp | AGAGGGGTTGTTAGCTTGTTGTGGCTGAGCACCAGTTGTGTGATGTaGGCTAGAGAGAACAAGCCGTTGACATCCAACATACTGGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: RGVVSLLWLSTSCVM*ARENKPLTSNILEI Trigger: TATCTCCAGTATGTTGGATGTCAACGGCTTGTTCTCTCTAGCCCACATCACACAACTGGTGCTCAGCCACAACAAGCTAACAACCCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134551.8 |
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| CDS-3UTR CAA 90 bp | AAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCAGGCTGCGTTCTGTCGTTATTCTTCTTaGGAGGTTCTGGGTTCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: KRHHLPQVFQRCKSQAAFCRYSS*EVLGSL Trigger: AAGCGAACCCAGAACCTCCAAAGAAGAATAACGACA...GAACGCAGCCTGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | AAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGAGGTTCTGGGTTCGCTaGCATGTGTCTGCCGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KQMRRNVRLYKNGTTYHKRFWVR*HVSAVE Trigger: CTCTACGGCAGACACATGCAAGCGAACCCAGAACCT...CTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | AACATTAGAGGAGGTAAAAAGAAATTTCGGAGGGGGTGGAGAGAAGTAATAAAATCAGTTCCGCTACATTaGGTGGCACAGACAAGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: NIRGGKKKFRRGWREVIKSVPLH*VAQTSR Trigger: ACGGCTTGTCTGTGCCACCAAATGTAGCGGAACTGA...TTTTATTACTTCTCTCCACCCCCTCCGAAATTTCTTTTTACCTCCTCTAATGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000114791.9 |
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| CDS-3UTR CAA 90 bp | GACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCAAAAGTCATCAGTTCCGCTACATTaGGTGGCACAGTTGTTAGCT | + |
|
Preference number: 5 (lower is better) Translates to: DFIKTAPPTTSISKVQKSSVPLH*VAQLLA Trigger: AGCTAACAACTGTGCCACCAAATGTAGCGGAACTGA...TGACTTTTGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028059.9 |
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| CDS-3UTR CAA 90 bp | TTAAGGAAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACCCAGTTAGATCCAAGTaGCCAAGCTCTGGAGGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LRKQMRRNVRLYKNGTTYPVRSK*PSSGGR Trigger: TCTGCCTCCAGAGCTTGGCAACTTGGATCTAACTGG...GTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTTCCTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS GCA 90 bp | TGTCGTTATTCTTCTTTGGAGGTTCTGGGTTCGCTTGCATGTGTCTaGCGTAGAGGTACTTGTAAGTTTCTGAACGAATATATTCGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: CRYSSLEVLGSLACV*RRGTCKFLNEYIRK Trigger: TTTTCGAATATATTCGTTCAGAAACTTACAAGTACCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGAATAACGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS-3UTR CAA 90 bp | ATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGTATTTCACAGTTGTTAGCTTGTaGTGGCTGAGCACCAGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: MRRNVRLYKNGTTYHKYFTVVSL*WLSTSC Trigger: ACAACTGGTGCTCAGCCACAACAAGCTAACAACTGT...GAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028059.9 |
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| CDS-3UTR CAA 90 bp | AATGTAAGACTTTATAAAAACGGCACCACCTACCACAAGTATTTCAAAGGTGCATGTCGTTATTCTTCTTaGGAGGTTCTGGGTTCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: NVRLYKNGTTYHKYFKGACRYSS*EVLGSL Trigger: AAGCGAACCCAGAACCTCCAAAGAAGAATAACGACA...TGCACCTTTGAAATACTTGTGGTAGGTGGTGCCGTTTTTATAAAGTCTTACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS-3UTR CAA 90 bp | TTAAGGAAACAAATGAGAAGGAATGTAAGACTTTATAAAAACGGCACCACCTACTGTCGTTATTCTTCTTaGGAGGTTCTGGGTTCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LRKQMRRNVRLYKNGTTYCRYSS*EVLGSL Trigger: AAGCGAACCCAGAACCTCCAAAGAAGAATAACGACA...GTAGGTGGTGCCGTTTTTATAAAGTCTTACATTCCTTCTCATTTGTTTCCTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000191959.6 |
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| CDS CCA 72 bp | CTGGAGATACCCCTGTCACTCATGTCCACTTCCGGCTaGTTCTTCTCCCTGCTCTCCTCCACCAGCTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LEIPLSLMSTSG*FFSLLSSTSFF Trigger: GAAGAAGCTGGTGGAGGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACATGAGTGACAGGGGTATCTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 ENSMUST00000134551.8 ENSMUST00000137670.3 ENSMUST00000191959.6 |
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| CDS TCA 72 bp | ACCCAGGGGTTGTTCTCTGCTTTGAAGACCTGCTTCTaGCCAGTTAGATCCAAGTTGCCAAGCTCTGGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: TQGLFSALKTCF*PVRSKLPSSGG Trigger: GCCTCCAGAGCTTGGCAACTTGGATCTAACTGGTCAGAAGCAGGTCTTCAAAGCAGAGAACAACCCCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS CAA 72 bp | GTTCGCTTGCATGTGTCTGCCGTAGAGGACAAGCCGTaGACATCCAACATACTGGAGATACCCCTGTCACTC | + |
|
Preference number: 6 (lower is better) Translates to: VRLHVSAVEDKP*TSNILEIPLSL Trigger: GAGTGACAGGGGTATCTCCAGTATGTTGGATGTCAACGGCTTGTCCTCTACGGCAGACACATGCAAGCGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191959.6 |
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| CDS TCA 72 bp | TCAGTTCCGCTACATTTGGTGGCACAGACAAGCCGTTaGCATCCAACATACTGGAGATACCCCTGTCACTCA | + |
|
Preference number: 6 (lower is better) Translates to: SVPLHLVAQTSR*HPTYWRYPCHS Trigger: TGAGTGACAGGGGTATCTCCAGTATGTTGGATGTCAACGGCTTGTCTGTGCCACCAAATGTAGCGGAACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114791.9 |
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| CDS GCA 72 bp | TCTTCTTTGGAGGTTCTGGGTTCGCTTGCATGTGTCTaGCGTAGAGGACAAGCCGTTGACATCCAACATACT | + |
|
Preference number: 6 (lower is better) Translates to: SSLEVLGSLACV*RRGQAVDIQHT Trigger: AGTATGTTGGATGTCAACGGCTTGTCCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191959.6 |
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| CDS CAA 72 bp | ACCAGTTGTGTGATGTGGGCTAGAGAGAACAAGCCGTaGACATCCAACATACTGGAGATACCCCTGTCACTC | + |
|
Preference number: 6 (lower is better) Translates to: TSCVMWARENKP*TSNILEIPLSL Trigger: GAGTGACAGGGGTATCTCCAGTATGTTGGATGTCAACGGCTTGTTCTCTCTAGCCCACATCACACAACTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028059.9 ENSMUST00000134551.8 ENSMUST00000137670.3 |
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| CDS CAA 72 bp | TTTGTCGTTATTCTTCTTTGGAGGTTCTGGGTTCGCTaGCATGTGTCTGCCGTAGAGGACAAGCCGTTGACA | + |
|
Preference number: 6 (lower is better) Translates to: FVVILLWRFWVR*HVSAVEDKPLT Trigger: TGTCAACGGCTTGTCCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGAATAACGACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191959.6 |
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| CDS TCA 72 bp | TTGCATGTGTCTGCCGTAGAGGTACTTGTAAGTTTCTaGACGAATATATTCGAAAACGTGGGAGACGCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: LHVSAVEVLVSF*TNIFENVGDAK Trigger: CTTGGCGTCTCCCACGTTTTCGAATATATTCGTTCAGAAACTTACAAGTACCTCTACGGCAGACACATGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS GCA 72 bp | TCTTCTTTGGAGGTTCTGGGTTCGCTTGCATGTGTCTaGCGTAGAGGTACTTGTAAGTTTCTGAACGAATAT | + |
|
Preference number: 6 (lower is better) Translates to: SSLEVLGSLACV*RRGTCKFLNEY Trigger: ATATTCGTTCAGAAACTTACAAGTACCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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| CDS CAA 72 bp | TTTGTCGTTATTCTTCTTTGGAGGTTCTGGGTTCGCTaGCATGTGTCTGCCGTAGAGGTACTTGTAAGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: FVVILLWRFWVR*HVSAVEVLVSF Trigger: GAAACTTACAAGTACCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCCAAAGAAGAATAACGACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028059.9 ENSMUST00000114791.9 |
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