Pregenerated sensors for RSRP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037266Ensembl transcript IDs: ENSMUST00000078084.7
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAAAGGTCAGTCTTTTATTTATGTGTATCAAGTTTGCCCACATGTaGGTCACACATCCCATGGAACAGAACGCTGGGTCCCCTAGAATT | + |
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Preference number: 1 (lower is better) Translates to: LKVSLLFMCIKFAHM*VTHPMEQNAGSPRI Trigger: AATTCTAGGGGACCCAGCGTTCTGTTCCATGGGATGTGTGACTCACATGTGGGCAAACTTGATACACATAAATAAAAGACTGACCTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR GCA 90 bp | GTCCCCATTAAGTCTCTTTCTGTAATGGATTTTAATCACATTTACTaGTGTGATCACTCAGGCAGACGATCTAATGCTGGACACAAACCC | + |
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Preference number: 1 (lower is better) Translates to: VPIKSLSVMDFNHIY*CDHSGRRSNAGHKP Trigger: GGGTTTGTGTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAATGTGATTAAAATCCATTACAGAAAGAGACTTAATGGGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR CCA 90 bp | AATACTTACAGATATATACAAGATTCCCACCTGTATGCAATTCTCTaGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACCTCAACCATG | + |
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Preference number: 1 (lower is better) Translates to: NTYRYIQDSHLYAIL*VICVLLSSRETSTM Trigger: CATGGTTGAGGTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGTATATATCTGTAAGTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR GCA 90 bp | AATTCTATACAATACTTACAGATATATACAAGATTCCCACCTGTATaGAATTCTCTGGGTCATCTGTGTCCTCCTATCTTCAAGAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: NSIQYLQIYTRFPPV*NSLGHLCPPIFKRN Trigger: GTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGTATATATCTGTAAGTATTGTATAGAATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR-3UTR CCA 90 bp | ATTAAGAGGAGTCTTAGGGCATATTCCAATACCAGCCCTGAGGGGATACACATTCTGTATGCAATTCTCTaGGTCATCTGTGTCCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: IKRSLRAYSNTSPEGIHILYAIL*VICVLL Trigger: TAGGAGGACACAGATGACCCAGAGAATTGCATACAG...AATGTGTATCCCCTCAGGGCTGGTATTGGAATATGCCCTAAGACTCCTCTTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR CCA 72 bp | AGATATATACAAGATTCCCACCTGTATGCAATTCTCTaGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: RYIQDSHLYAIL*VICVLLSSRET Trigger: GGTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGTATATATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR-3UTR CAA 90 bp | GGAGTCTTAGGGCATATTCCAATACCAGCCCTGAGGGGATACACATTTAAAGAATTCATAAACCCTGTGTaGTTTTCAGGAAGGTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: GVLGHIPIPALRGYTFKEFINPV*FSGRFL Trigger: AAGAAACCTTCCTGAAAACAACACAGGGTTTATGAA...TTCTTTAAATGTGTATCCCCTCAGGGCTGGTATTGGAATATGCCCTAAGACTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR GCA 72 bp | CAATACTTACAGATATATACAAGATTCCCACCTGTATaGAATTCTCTGGGTCATCTGTGTCCTCCTATCTTC | + |
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Preference number: 3 (lower is better) Translates to: QYLQIYTRFPPV*NSLGHLCPPIF Trigger: GAAGATAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGTATATATCTGTAAGTATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| 3UTR TCA 72 bp | CCAACCTCCCTAATGCAACACACAAATGTCAAAGTATaGATTCATAAACCCTGTGTTGTTTTCAGGAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: PTSLMQHTNVKV*IHKPCVVFRKV Trigger: AACCTTCCTGAAAACAACACAGGGTTTATGAATTCATACTTTGACATTTGTGTGTTGCATTAGGGAGGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | ACAAGATTCCCACCTGTATGCAATTCTCTGGGTCATCTGTGTCCTCCTATCTTCCGCCTGTACTTGCGCTaGTGGCGCCTGCGGGACCGG | + |
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Preference number: 4 (lower is better) Translates to: TRFPPVCNSLGHLCPPIFRLYLR*WRLRDR Trigger: CCGGTCCCGCAGGCGCCACCAGCGCAAGTACAGGCG...GAAGATAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | TTTACTGCTGTGATCACTCAGGCAGACGATCTAATGCTGGACACAAACCCCTCAGGCGAGGCTTTCTCCTaGGGAGAGCCGGGCCACATG | + |
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Preference number: 4 (lower is better) Translates to: FTAVITQADDLMLDTNPSGEAFS*GEPGHM Trigger: CATGTGGCCCGGCTCTCCGCAGGAGAAAGCCTCGCC...TGAGGGGTTTGTGTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | GGAGTCTTAGGGCATATTCCAATACCAGCCCTGAGGGGATACACATTTAAAGAATACGACCACCGGTGCTaGGACCTCCCGCGGGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: GVLGHIPIPALRGYTFKEYDHRC*DLPRER Trigger: GCGCTCCCGCGGGAGGTCGCAGCACCGGTGGTCGTA...TTCTTTAAATGTGTATCCCCTCAGGGCTGGTATTGGAATATGCCCTAAGACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | ATTTTAATCACATTTACTGCTGTGATCACTCAGGCAGACGATCTAATGCTGGACTGCGCTGGTGGCGCCTaGGGGACCGGGATCGGGACC | + |
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Preference number: 4 (lower is better) Translates to: ILITFTAVITQADDLMLDCAGGA*GTGIGT Trigger: GGTCCCGATCCCGGTCCCGCAGGCGCCACCAGCGCA...GTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAATGTGATTAAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | GCTGTGATCACTCAGGCAGACGATCTAATGCTGGACACAAACCCCTCAGTAAAGCCACCTTTGGCCCACTaGTGGAAACAGCTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: AVITQADDLMLDTNPSVKPPLAH*WKQLSP Trigger: AGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGGTGG...CTTTACTGAGGGGTTTGTGTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | TATATACAAGATTCCCACCTGTATGCAATTCTCTGGGTCATCTGTGTCCTCCTAAGTAGCGCCTGTACTTaGGCTGGTGGCGCCTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: YIQDSHLYAILWVICVLLSSACT*AGGACG Trigger: CCCGCAGGCGCCACCAGCGCAAGTACAGGCGCTACT...TAGGAGGACACAGATGACCCAGAGAATTGCATACAGGTGGGAATCTTGTATATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | GGAGTCTTAGGGCATATTCCAATACCAGCCCTGAGGGGATACACATTTAAAGAAGAAACAGCTGTCCCCTaGCTTGCCTCCTTGGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GVLGHIPIPALRGYTFKEETAVP*LASLAR Trigger: CCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTC...TTCTTTAAATGTGTATCCCCTCAGGGCTGGTATTGGAATATGCCCTAAGACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | CCCTGTGTTGTTTTCAGGAAGGTTTCTTCTTCAGATGTAGACAGACACATTCAATCCTGCTGCGCGACCTaGTTCTGGATCTTTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PCVVFRKVSSSDVDRHIQSCCAT*FWIFPS Trigger: GGAGGGAAAGATCCAGAACCAGGTCGCGCAGCAGGA...TTGAATGTGTCTGTCTACATCTGAAGAAGAAACCTTCCTGAAAACAACACAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | AGGTCAGTCTTTTATTTATGTGTATCAAGTTTGCCCACATGTGAGTCACACATCTGCGCGACCTGGTTCTaGATCTTTCCCTCCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSVFYLCVSSLPTCESHICATWF*IFPSTW Trigger: CCAGGTGGAGGGAAAGATCCAGAACCAGGTCGCGCA...GATGTGTGACTCACATGTGGGCAAACTTGATACACATAAATAAAAGACTGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR TCA 90 bp | TGCAATTCTCTGGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACCTCAACCATCGGAATTATTGGAGCTaGAGGCTATGTTTCTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: CNSLGHLCPPIFKRNLNHRNYWS*RLCFFV Trigger: CACAAAGAAACATAGCCTTCAGCTCCAATAATTCCG...ATGGTTGAGGTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | TGCAATTCTCTGGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACCTCAACCATGCTTTAGTTGTTTTCTaGAGTGGCTTTGCTACGGAA | + |
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Preference number: 4 (lower is better) Translates to: CNSLGHLCPPIFKRNLNHALVVF*SGFATE Trigger: TTCCGTAGCAAAGCCACTGCAGAAAACAACTAAAGC...ATGGTTGAGGTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR TCA 90 bp | AAAAAGAAACCAATGTCCAACCTCCCTAATGCAACACACAAATGTCAAAGTATGTTCAGTCTGCTTTTCTaGATGCTCCACCTTTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: KKKPMSNLPNATHKCQSMFSLLF*MLHLWP Trigger: GGGCCAAAGGTGGAGCATTCAGAAAAGCAGACTGAA...CATACTTTGACATTTGTGTGTTGCATTAGGGAGGTTGGACATTGGTTTCTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR GCA 90 bp | AGGTCAGTCTTTTATTTATGTGTATCAAGTTTGCCCACATGTGAGTCACACATCGTTGCATCTTCAGTCTaGTTTTCTGAATGCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: RSVFYLCVSSLPTCESHIVASSV*FSECST Trigger: GGTGGAGCATTCAGAAAAGCAGACTGAAGATGCAAC...GATGTGTGACTCACATGTGGGCAAACTTGATACACATAAATAAAAGACTGACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | AGGTCAGTCTTTTATTTATGTGTATCAAGTTTGCCCACATGTGAGTCACACATCGAGCTTTTGCTGCGTTaGCTTTTGCTATTTCTAGTA | + |
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Preference number: 4 (lower is better) Translates to: RSVFYLCVSSLPTCESHIELLLR*LLLFLV Trigger: TACTAGAAATAGCAAAAGCCAACGCAGCAAAAGCTC...GATGTGTGACTCACATGTGGGCAAACTTGATACACATAAATAAAAGACTGACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CCA 90 bp | AAAAAGAAACCAATGTCCAACCTCCCTAATGCAACACACAAATGTCAAAGTATGAGTTGTTTTCTGCAGTaGCTTTGCTACGGAATTATT | + |
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Preference number: 4 (lower is better) Translates to: KKKPMSNLPNATHKCQSMSCFLQ*LCYGII Trigger: AATAATTCCGTAGCAAAGCCACTGCAGAAAACAACT...CATACTTTGACATTTGTGTGTTGCATTAGGGAGGTTGGACATTGGTTTCTTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 90 bp | TGCGGGAGCGCGACGACAGGCGGCTGGAGCGGCCCGAGCCCGAGGTaGACGGCGAGGCTTTCTCCTGCGGAGAGCCGGGCCACATGTCGT | + |
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Preference number: 5 (lower is better) Translates to: CGSATTGGWSGPSPR*TARLSPAESRATCR Trigger: ACGACATGTGGCCCGGCTCTCCGCAGGAGAAAGCCTCGCCGTCCACCTCGGGCTCGGGCCGCTCCAGCCGCCTGTCGTCGCGCTCCCGCA 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | ACCTCCGCGGCCGCTCGTAACGGCTGTCGCGGTGATAGCGGTGGCTaGGGGAGCGCGACCGGCTGCGTGAGTACGAGCGTGAGTAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: TSAAARNGCRGDSGG*GSATGCVSTSVSSA Trigger: GGCGCTACTCACGCTCGTACTCACGCAGCCGGTCGCGCTCCCGCAGCCACCGCTATCACCGCGACAGCCGTTACGAGCGGCCGCGGAGGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | GTGAGTACGAGCGTGAGTAGCGCCTGTACTTGCGCTGGTGGCGCCTaGGGGACCGGGATCGGGACCGTCTGCTCCTCCGCGGCCGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: VSTSVSSACTCAGGA*GTGIGTVCSSAAGC Trigger: ACAGCCGGCCGCGGAGGAGCAGACGGTCCCGATCCCGGTCCCGCAGGCGCCACCAGCGCAAGTACAGGCGCTACTCACGCTCGTACTCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | AGCGCGACCGGCTGCGTGAGTACGAGCGTGAGTAGCGCCTGTACTTaGGCTGGTGGCGCCTGCGGGACCGGGATCGGGACCGTCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SATGCVSTSVSSACT*AGGACGTGIGTVCS Trigger: GGAGCAGACGGTCCCGATCCCGGTCCCGCAGGCGCCACCAGCGCAAGTACAGGCGCTACTCACGCTCGTACTCACGCAGCCGGTCGCGCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | AACGGCTGTCGCGGTGATAGCGGTGGCTGCGGGAGCGCGACCGGCTaGGTGAGTACGAGCGTGAGTAGCGCCTGTACTTGCGCTGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: NGCRGDSGGCGSATG*VSTSVSSACTCAGG Trigger: GCCACCAGCGCAAGTACAGGCGCTACTCACGCTCGTACTCACGCAGCCGGTCGCGCTCCCGCAGCCACCGCTATCACCGCGACAGCCGTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | CGGCTGGAGCGGCCCGAGCCCGAGGTGGACGGCGAGGCTTTCTCCTaGGGAGAGCCGGGCCACATGTCGTTCACGTATTTAGACATGGCG | + |
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Preference number: 5 (lower is better) Translates to: RLERPEPEVDGEAFS*GEPGHMSFTYLDMA Trigger: CGCCATGTCTAAATACGTGAACGACATGTGGCCCGGCTCTCCGCAGGAGAAAGCCTCGCCGTCCACCTCGGGCTCGGGCCGCTCCAGCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 90 bp | TTCTACTCCTGCTGCGCGACCTGGTTCTGGATCTTTCCCTCCACCTaGGGCGATCCTCGGGGTACACCGTCCGGCCGAAGCCGTAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: FYSCCATWFWIFPST*GDPRGTPSGRSRSS Trigger: GCTACTACGGCTTCGGCCGGACGGTGTACCCCGAGGATCGCCCCAGGTGGAGGGAAAGATCCAGAACCAGGTCGCGCAGCAGGAGTAGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 90 bp | CATCTTCAGTCTGCTTTTCTGAATGCTCCACCTTTGGCCCACTGCTaGAAACAGCTGTCCCCTGGCTTGCCTCCTTGGCTCGGAGACTTG | + |
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Preference number: 5 (lower is better) Translates to: HLQSAFLNAPPLAHC*KQLSPGLPPWLGDL Trigger: CAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGGTGGAGCATTCAGAAAAGCAGACTGAAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 90 bp | CCTGGCTTGCCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGAAGTTaGCTGTTCCCAGAGCTTTTGCTGCGTTGGCTTTTGCTATTTCTA | + |
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Preference number: 5 (lower is better) Translates to: PGLPPWLGDLLASRS*LFPELLLRWLLLFL Trigger: TAGAAATAGCAAAAGCCAACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | TGCAATTCTCTGGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACCTCAACCATCAGCTGTCCCCTGGCTaGCCTCCTTGGCTCGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: CNSLGHLCPPIFKRNLNHQLSPG*PPWLGD Trigger: GTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTG...ATGGTTGAGGTTTCTCTTGAAGATAGGAGGACACAGATGACCCAGAGAATTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | TGGGTCATCTGTGTCCTCCTATCTTCAAGAGAAACCTCAACCATGAACGTCCCCCTGTTCCCAGAGCTTTaGCTGCGTTGGCTTTTGCTA | + |
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Preference number: 5 (lower is better) Translates to: WVICVLLSSRETSTMNVPLFPEL*LRWLLL Trigger: TAGCAAAAGCCAACGCAGCAAAAGCTCTGGGAACAG...GGGGACGTTCATGGTTGAGGTTTCTCTTGAAGATAGGAGGACACAGATGACCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | TTTACTGCTGTGATCACTCAGGCAGACGATCTAATGCTGGACACAAACCCCTCAGCTGGCAAGTCGAAGTaGGCTGTTCCCAGAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: FTAVITQADDLMLDTNPSAGKSK*AVPRAF Trigger: AAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGC...TGAGGGGTTTGTGTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | ATTTTAATCACATTTACTGCTGTGATCACTCAGGCAGACGATCTAATGCTGGACCCTTGGCTCGGAGACTaGCTGGCAAGTCGAAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: ILITFTAVITQADDLMLDPWLGD*LASRSW Trigger: CCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGG...GTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAATGTGATTAAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 90 bp | GGTGATCCTGAAGACTTCTCTTCAACAGCAGCTTTAGTTGTTTTCTaGAGTGGCTTTGCTACGGAATTATTGGAGCTGAAGGCTATGTTT | + |
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Preference number: 5 (lower is better) Translates to: GDPEDFSSTAALVVF*SGFATELLELKAMF Trigger: AAACATAGCCTTCAGCTCCAATAATTCCGTAGCAAAGCCACTGCAGAAAACAACTAAAGCTGCTGTTGAAGAGAAGTCTTCAGGATCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | AGGTCAGTCTTTTATTTATGTGTATCAAGTTTGCCCACATGTGAGTCACACATCAGAGCTTTTGCTGCGTaGGCTTTTGCTATTTCTAGT | + |
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Preference number: 5 (lower is better) Translates to: RSVFYLCVSSLPTCESHIRAFAA*AFAISS Trigger: ACTAGAAATAGCAAAAGCCAACGCAGCAAAAGCTCT...GATGTGTGACTCACATGTGGGCAAACTTGATACACATAAATAAAAGACTGACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | ATTTTAATCACATTTACTGCTGTGATCACTCAGGCAGACGATCTAATGCTGGACTTTGCTACGGAATTATaGGAGCTGAAGGCTATGTTT | + |
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Preference number: 5 (lower is better) Translates to: ILITFTAVITQADDLMLDFATEL*ELKAMF Trigger: AAACATAGCCTTCAGCTCCAATAATTCCGTAGCAAA...GTCCAGCATTAGATCGTCTGCCTGAGTGATCACAGCAGTAAATGTGATTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS-3UTR CAA 90 bp | TGCAACACACAAATGTCAAAGTATGAATTCATAAACCCTGTGTTGTTTTCAGGAGAAGGCTATGTTTCTTaGTGTAGAAGACTTTTCACT | + |
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Preference number: 5 (lower is better) Translates to: CNTQMSKYEFINPVLFSGEGYVS*CRRLFT Trigger: AGTGAAAAGTCTTCTACACAAAGAAACATAGCCTTC...TCCTGAAAACAACACAGGGTTTATGAATTCATACTTTGACATTTGTGTGTTGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | GGGAGTCGCGTCGGGAGCTGCGGGACGAAGAGCGGCTaGGGGAGCGCGACGACAGGCGGCTGGAGCGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: GSRVGSCGTKSG*GSATTGGWSGP Trigger: CGGGCCGCTCCAGCCGCCTGTCGTCGCGCTCCCGCAGCCGCTCTTCGTCCCGCAGCTCCCGACGCGACTCCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | GCTGGTGGCGCCTGCGGGACCGGGATCGGGACCGTCTaGTCCTCCGCGGCCGGCTGTGGCTGCGCGAGGACG | + |
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Preference number: 6 (lower is better) Translates to: AGGACGTGIGTV*SSAAGCGCART Trigger: CGTCCTCGCGCAGCCACAGCCGGCCGCGGAGGAGCAGACGGTCCCGATCCCGGTCCCGCAGGCGCCACCAGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 72 bp | GCGACGACAGGCGGCTGGAGCGGCCCGAGCCCGAGGTaGACGGCGAGGCTTTCTCCTGCGGAGAGCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ATTGGWSGPSPR*TARLSPAESRA Trigger: GGCCCGGCTCTCCGCAGGAGAAAGCCTCGCCGTCCACCTCGGGCTCGGGCCGCTCCAGCCGCCTGTCGTCGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 72 bp | ACGAAGAGCGGCTGCGGGAGCGCGACGACAGGCGGCTaGAGCGGCCCGAGCCCGAGGTGGACGGCGAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: TKSGCGSATTGG*SGPSPRWTARL Trigger: AAGCCTCGCCGTCCACCTCGGGCTCGGGCCGCTCCAGCCGCCTGTCGTCGCGCTCCCGCAGCCGCTCTTCGT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | GCCGCTCGTAACGGCTGTCGCGGTGATAGCGGTGGCTaGGGGAGCGCGACCGGCTGCGTGAGTACGAGCGTG | + |
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Preference number: 6 (lower is better) Translates to: AARNGCRGDSGG*GSATGCVSTSV Trigger: CACGCTCGTACTCACGCAGCCGGTCGCGCTCCCGCAGCCACCGCTATCACCGCGACAGCCGTTACGAGCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | GGCTGCGTGAGTACGAGCGTGAGTAGCGCCTGTACTTaGGCTGGTGGCGCCTGCGGGACCGGGATCGGGACC | + |
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Preference number: 6 (lower is better) Translates to: GCVSTSVSSACT*AGGACGTGIGT Trigger: GGTCCCGATCCCGGTCCCGCAGGCGCCACCAGCGCAAGTACAGGCGCTACTCACGCTCGTACTCACGCAGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | CGCGGTGATAGCGGTGGCTGCGGGAGCGCGACCGGCTaGGTGAGTACGAGCGTGAGTAGCGCCTGTACTTGC | + |
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Preference number: 6 (lower is better) Translates to: RGDSGGCGSATG*VSTSVSSACTC Trigger: GCAAGTACAGGCGCTACTCACGCTCGTACTCACGCAGCCGGTCGCGCTCCCGCAGCCACCGCTATCACCGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | CCTTTGGCCCACTGCTGGAAACAGCTGTCCCCTGGCTaGCCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGA | + |
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Preference number: 6 (lower is better) Translates to: PLAHCWKQLSPG*PPWLGDLLASR Trigger: TCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | CAGCTGTCCCCTGGCTTGCCTCCTTGGCTCGGAGACTaGCTGGCAAGTCGAAGTTGGCTGTTCCCAGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QLSPGLPPWLGD*LASRSWLFPEL Trigger: AAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | CCACTGCTGGAAACAGCTGTCCCCTGGCTTGCCTCCTaGGCTCGGAGACTTGCTGGCAAGTCGAAGTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: PLLETAVPWLAS*ARRLAGKSKLA Trigger: AGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 90 bp | AATGCTCCACCTTTGGCCCACTGCTGGAAACAGCTGTCCCCTGGCTaGCCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGAAGTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: NAPPLAHCWKQLSPG*PPWLGDLLASRSWL Trigger: CAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGGTGGAGCATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 90 bp | TGCTGGAAACAGCTGTCCCCTGGCTTGCCTCCTTGGCTCGGAGACTaGCTGGCAAGTCGAAGTTGGCTGTTCCCAGAGCTTTTGCTGCGT | + |
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Preference number: 6 (lower is better) Translates to: CWKQLSPGLPPWLGD*LASRSWLFPELLLR Trigger: ACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | CAGTCTGCTTTTCTGAATGCTCCACCTTTGGCCCACTaGTGGAAACAGCTGTCCCCTGGCTTGCCTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: QSAFLNAPPLAH*WKQLSPGLPPW Trigger: CCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGGTGGAGCATTCAGAAAAGCAGACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 72 bp | CCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGAAGTTaGCTGTTCCCAGAGCTTTTGCTGCGTTGGCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: PPWLGDLLASRS*LFPELLLRWLL Trigger: CAAAAGCCAACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | GCCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGAAGTaGGCTGTTCCCAGAGCTTTTGCTGCGTTGGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: ASLARRLAGKSK*AVPRAFAALAF Trigger: AAAAGCCAACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 90 bp | CCCTGGCTTGCCTCCTTGGCTCGGAGACTTGCTGGCAAGTCGAAGTaGGCTGTTCCCAGAGCTTTTGCTGCGTTGGCTTTTGCTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: PWLASLARRLAGKSK*AVPRAFAALAFAIS Trigger: AGAAATAGCAAAAGCCAACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCAGCAAGTCTCCGAGCCAAGGAGGCAAGCCAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS TCA 72 bp | ACTGGTATTTTTAGTTGCATCTTCAGTCTGCTTTTCTaGATGCTCCACCTTTGGCCCACTGCTGGAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: TGIFSCIFSLLF*MLHLWPTAGNS Trigger: GCTGTTTCCAGCAGTGGGCCAAAGGTGGAGCATTCAGAAAAGCAGACTGAAGATGCAACTAAAAATACCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CCA 72 bp | CTTCTCTTCAACAGCAGCTTTAGTTGTTTTCTGCAGTaGCTTTGCTACGGAATTATTGGAGCTGAAGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: LLFNSSFSCFLQ*LCYGIIGAEGY Trigger: ATAGCCTTCAGCTCCAATAATTCCGTAGCAAAGCCACTGCAGAAAACAACTAAAGCTGCTGTTGAAGAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS GCA 72 bp | TTCAACAGCAGCTTTAGTTGTTTTCTGCAGTGGCTTTaGTACGGAATTATTGGAGCTGAAGGCTATGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: FNSSFSCFLQWL*YGIIGAEGYVS Trigger: AGAAACATAGCCTTCAGCTCCAATAATTCCGTAGCAAAGCCACTGCAGAAAACAACTAAAGCTGCTGTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | TTAGTTGTTTTCTGCAGTGGCTTTGCTACGGAATTATaGGAGCTGAAGGCTATGTTTCTTTGTGTAGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: LVVFCSGFATEL*ELKAMFLCVED Trigger: GTCTTCTACACAAAGAAACATAGCCTTCAGCTCCAATAATTCCGTAGCAAAGCCACTGCAGAAAACAACTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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| CDS CAA 72 bp | TGCTACGGAATTATTGGAGCTGAAGGCTATGTTTCTTaGTGTAGAAGACTTTTCACTGGTATTTTTAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: CYGIIGAEGYVS*CRRLFTGIFSC Trigger: GCAACTAAAAATACCAGTGAAAAGTCTTCTACACAAAGAAACATAGCCTTCAGCTCCAATAATTCCGTAGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078084.7 |
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