Pregenerated sensors for RSPO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032852Ensembl transcript IDs: ENSMUST00000042217.4
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAATGGCAGAGGTTAAGACAGACTTGCCATTTGGTTTGTTTTACCTaGAGGCTCCTCCCAATATCCCTCCCACCTGCAGTTGAGGGTATC | + |
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Preference number: 1 (lower is better) Translates to: KWQRLRQTCHLVCFT*RLLPISLPPAVEGI Trigger: GATACCCTCAACTGCAGGTGGGAGGGATATTGGGAGGAGCCTTCAGGTAAAACAAACCAAATGGCAAGTCTGTCTTAACCTCTGCCATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR GCA 90 bp | ATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACACTTCCAAGGGGATGTaGTCATGGGCCTGGACCACT | + |
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Preference number: 2 (lower is better) Translates to: MGLQRPWEGGQLEKGHGHTSKGM*SWAWTT Trigger: AGTGGTCCAGGCCCATGAGCACATCCCCTTGGAAGT...GTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CAA 90 bp | ATCCTGGATAAGAGGTTCAGGCTGGGCCTTCGGAGGTCCCAGAGTTaGTCCCTGGTGGCCTCATCGCAGAGGCAATGGCTGAGTGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: ILDKRFRLGLRRSQS*SLVASSQRQWLSAV Trigger: TACAGCACTCAGCCATTGCCTCTGCGATGAGGCCACCAGGGACAAACTCTGGGACCTCCGAAGGCCCAGCCTGAACCTCTTATCCAGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR TCA 90 bp | GCATCATGGAGGAACACAGCTACAGGGTCAGGAGTGGTGCTGGGGACCCCCATCGTGCGGGGTGGACGGTaGAGATCAGAAAGGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: ASWRNTATGSGVVLGTPIVRGGR*RSERKT Trigger: TGTTTTCCTTTCTGATCTTCACCGTCCACCCCGCAC...GATGGGGGTCCCCAGCACCACTCCTGACCCTGTAGCTGTGTTCCTCCATGATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR GCA 90 bp | GGATACAAGCTTAATCTCTCTCTTATGTCTGTCTCCGTGTGCGGGGTGGACGGTAGCCCACTGTGGAAGTaGGGCGAGCGGAAGGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: GYKLNLSLMSVSVCGVDGSPLWK*GERKAE Trigger: CTCTGCCTTCCGCTCGCCGCACTTCCACAGTGGGCT...ACCGTCCACCCCGCACACGGAGACAGACATAAGAGAGAGATTAAGCTTGTATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR GCA 90 bp | ATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACTCATATAACTCCGGCTaGAGGGTCTCTCTAGCTAGA | + |
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Preference number: 2 (lower is better) Translates to: MGLQRPWEGGQLEKGHGHSYNSG*RVSLAR Trigger: TCTAGCTAGAGAGACCCTGCAGCCGGAGTTATATGA...GTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | CCTATACCACCATCCTGGATAAGAGGTTCAGGCTGGGCCTTCGGAGGTCCCAGAATGTGGAGAAAGAGCTaGACAGGGGAGAAGCGAGGA | + |
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Preference number: 2 (lower is better) Translates to: PIPPSWIRGSGWAFGGPRMWRKS*TGEKRG Trigger: TCCTCGCTTCTCCCCTGTCCAGCTCTTTCTCCACAT...TCTGGGACCTCCGAAGGCCCAGCCTGAACCTCTTATCCAGGATGGTGGTATAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGGGGAGGGTGGTCAGCTaGAGAAGGGTCATGGGCACT | + |
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Preference number: 2 (lower is better) Translates to: DCEGPCLSDITSHGVSLLGRVVS*RRVMGT Trigger: AGTGCCCATGACCCTTCTCCAGCTGACCACCCTCCC...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | ATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACGTAACTTTGCAAAGATaGAGTCAGGACAGAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: MGLQRPWEGGQLEKGHGHVTLQR*SQDRVT Trigger: TGTGACTCTGTCCTGACTCCATCTTTGCAAAGTTAC...GTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGAAGGCCTTGGGAGGGTaGTCAGCTGGAGAAGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: DCEGPCLSDITSHGVSLLKALGG*SAGEGS Trigger: TGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTT...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | TATCCATGTGAGAGGCCACCCCAACTGCTAACCTGGCAATTTTCTATACTTCTCAAAGGGAGACCAGAGTaGGATGGGGATAGGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: YPCERPPQLLTWQFSILLKGRPE*DGDRGG Trigger: CCCACCCCTATCCCCATCCCACTCTGGTCTCCCTTT...GAGAAGTATAGAAAATTGCCAGGTTAGCAGTTGGGGTGGCCTCTCACATGGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CCA 90 bp | TGTGACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCCCCAACTGCTAACCTaGCAATTTTCTATACTTCTC | + |
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Preference number: 2 (lower is better) Translates to: CDCEGPCLSDITSHGVSLPQLLT*QFSILL Trigger: GAGAAGTATAGAAAATTGCCAGGTTAGCAGTTGGGG...GAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR GCA 72 bp | CTGGACAGGGGAGAAGCGAGGAGCCCACTGTGGAAGTaGGGCGAGCGGAAGGCAGAGGCCAGAGCTGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: LDRGEARSPLWK*GERKAEARAGD Trigger: ATCTCCAGCTCTGGCCTCTGCCTTCCGCTCGCCGCACTTCCACAGTGGGCTCCTCGCTTCTCCCCTGTCCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CAA 90 bp | ATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACCGGAGGTCCCAGAGTTaGTCCCTGGTGGCCTCATCG | + |
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Preference number: 3 (lower is better) Translates to: MGLQRPWEGGQLEKGHGHRRSQS*SLVASS Trigger: CGATGAGGCCACCAGGGACAAACTCTGGGACCTCCG...GTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CCA 72 bp | CCTGGCCTGGCAAGCAGGGGTCCCAGCTGTTCTCAGTaGGGCATCATGGAGGAACACAGCTACAGGGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PGLASRGPSCSQ*GIMEEHSYRVR Trigger: CCTGACCCTGTAGCTGTGTTCCTCCATGATGCCCCACTGAGAACAGCTGGGACCCCTGCTTGCCAGGCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR TCA 72 bp | GGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACTATaGAAGGGAGACCAGAGTGGGATGGGGATAGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: GGWSAGEGSWAL*KGDQSGMGIGV Trigger: CACCCCTATCCCCATCCCACTCTGGTCTCCCTTTCATAGTGCCCATGACCCTTCTCCAGCTGACCACCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CCA 72 bp | GGGCATCATGGAGGAACACAGCTACAGGGTCAGGAGTaGTGCTGGGGACCCCCATCTGTCAAGCGTAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: GHHGGTQLQGQE*CWGPPSVKRSV Trigger: CACACTACGCTTGACAGATGGGGGTCCCCAGCACCACTCCTGACCCTGTAGCTGTGTTCCTCCATGATGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CCA 72 bp | GCTCCTATACCACCATCCTGGATAAGAGGTTCAGGCTaGGCCTTCGGAGGTCCCAGAGTTTGTCCCTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: APIPPSWIRGSG*AFGGPRVCPWW Trigger: CCACCAGGGACAAACTCTGGGACCTCCGAAGGCCCAGCCTGAACCTCTTATCCAGGATGGTGGTATAGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CCA 72 bp | GCATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTaGAGAAGGGTCATGGGCACTATGAAAGGGAGACCA | + |
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Preference number: 3 (lower is better) Translates to: AWVSKGLGRVVS*RRVMGTMKGRP Trigger: TGGTCTCCCTTTCATAGTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR GCA 72 bp | CATCATGGAGGAACACAGCTACAGGGTCAGGAGTGGTaGTGGGGACCCCCATCTGTCAAGCGTAGTGTGACT | + |
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Preference number: 3 (lower is better) Translates to: HHGGTQLQGQEW*WGPPSVKRSVT Trigger: AGTCACACTACGCTTGACAGATGGGGGTCCCCAGCACCACTCCTGACCCTGTAGCTGTGTTCCTCCATGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR-3UTR CAA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGGGGTCTCCAAAGGCCTaGGGAGGGTGGTCAGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: DCEGPCLSDITSHGVSLLGSPKA*GGWSAG Trigger: TCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCC...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR TCA 72 bp | GAGTGCTGTAGAATCGGCCTTGAGGGACTGGCCAGGTaGATGGTTCATATAACTCCGGCTGCAGGGTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: ECCRIGLEGLAR*MVHITPAAGSL Trigger: GAGAGACCCTGCAGCCGGAGTTATATGAACCATTCACCTGGCCAGTCCCTCAAGGCCGATTCTACAGCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR GCA 72 bp | TTATTTCATAAGAGATCACAGCCCCACCTGATCCTGTaGATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: LFHKRSQPHLIL*MGLQRPWEGGQ Trigger: CTGACCACCCTCCCAAGGCCTTTGGAGACCCATGCACAGGATCAGGTGGGGCTGTGATCTCTTATGAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR TCA 72 bp | CTTTGGGATTATTTCATAAGAGATCACAGCCCCACCTaGTCCTGTGCATGGGTCTCCAAAGGCCTTGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: LWDYFIRDHSPT*SCAWVSKGLGR Trigger: CCTCCCAAGGCCTTTGGAGACCCATGCACAGGATCAGGTGGGGCTGTGATCTCTTATGAAATAATCCCAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR TCA 72 bp | AGGTTAAGACAGACTTGCCATTTGGTTTGTTTTACCTaGAGGCTCCTCCCAATATCCCTCCCACCTGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: RLRQTCHLVCFT*RLLPISLPPAV Trigger: AACTGCAGGTGGGAGGGATATTGGGAGGAGCCTTCAGGTAAAACAAACCAAATGGCAAGTCTGTCTTAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR GCA 72 bp | TACAAGCTTAATCTCTCTCTTATGTCTGTCTCCGTGTaGGGGGTGGACGGTGAAGATCAGAAAGGAAAACAG | + |
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Preference number: 3 (lower is better) Translates to: YKLNLSLMSVSV*GVDGEDQKGKQ Trigger: CTGTTTTCCTTTCTGATCTTCACCGTCCACCCCGCACACGGAGACAGACATAAGAGAGAGATTAAGCTTGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GGGGAGAAGCGAGGAGCCCACTGTGGAAGTGCGGCGAGCGGAAGGCAGAGGCCAGCCTCTGCTGGCAGGTaGAACAGCCATTCTCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: GEKRGAHCGSAASGRQRPASAGR*NSHSPP Trigger: CGGAGGAGAATGGCTGTTCCACCTGCCAGCAGAGGC...TGGCCTCTGCCTTCCGCTCGCCGCACTTCCACAGTGGGCTCCTCGCTTCTCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR GCA 90 bp | GCTGGACAGGGGAGAAGCGAGGAGCCCACTGTGGAAGTGCGGCGAGCGGAAGGCAAGAGGAAGAGCCTCTaGTGGCAGGTGGAACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: AGQGRSEEPTVEVRRAEGKRKSL*WQVEQP Trigger: TGGCTGTTCCACCTGCCAGCAGAGGCTCTTCCTCTT...GCCTTCCGCTCGCCGCACTTCCACAGTGGGCTCCTCGCTTCTCCCCTGTCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR GCA 90 bp | CTGGACAGGGGAGAAGCGAGGAGCCCACTGTGGAAGTGCGGCGAGCGGAAGGCATCTTCCCATTGTGTATaGAGGGACTCCAGCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LDRGEARSPLWKCGERKASSHCV*RDSSCP Trigger: GGGGCAGCTGGAGTCCCTGCATACACAATGGGAAGA...TGCCTTCCGCTCGCCGCACTTCCACAGTGGGCTCCTCGCTTCTCCCCTGTCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CAA 72 bp | AAGAGGTTCAGGCTGGGCCTTCGGAGGTCCCAGAGTTaGTCCCTGGTGGCCTCATCGCAGAGGCAATGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KRFRLGLRRSQS*SLVASSQRQWL Trigger: CAGCCATTGCCTCTGCGATGAGGCCACCAGGGACAAACTCTGGGACCTCCGAAGGCCCAGCCTGAACCTCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR TCA 90 bp | ATGGGTCTCCAAAGGCCTTGGGAGGGTGGTCAGCTGGAGAAGGGTCATGGGCACTGCCTTCACGGCGGATaGAGAGGAAGAGCCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: MGLQRPWEGGQLEKGHGHCLHGG*RGRASA Trigger: AGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCA...GTGCCCATGACCCTTCTCCAGCTGACCACCCTCCCAAGGCCTTTGGAGACCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GAGTTTGTCCCTGGTGGCCTCATCGCAGAGGCAATGGCTGAGTGCTGTAGAATCAGCATGTCCACTGCGTaGGCGAGGAGCAGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EFVPGGLIAEAMAECCRISMSTA*ARSSSR Trigger: CCTGCTGCTGCTCCTCGCCCACGCAGTGGACATGCT...GATTCTACAGCACTCAGCCATTGCCTCTGCGATGAGGCCACCAGGGACAAACTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR TCA 90 bp | GAGTTTGTCCCTGGTGGCCTCATCGCAGAGGCAATGGCTGAGTGCTGTAGAATCACACACTTGCCGTACTaGCGGATGCCTTCACGGCGG | + |
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Preference number: 4 (lower is better) Translates to: EFVPGGLIAEAMAECCRITHLPY*RMPSRR Trigger: CCGCCGTGAAGGCATCCGTCAGTACGGCAAGTGTGT...GATTCTACAGCACTCAGCCATTGCCTCTGCGATGAGGCCACCAGGGACAAACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR GCA 90 bp | GAGTTTGTCCCTGGTGGCCTCATCGCAGAGGCAATGGCTGAGTGCTGTAGAATCCACGCTGGTGTGGCCTaGGCTCCAACTTCCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: EFVPGGLIAEAMAECCRIHAGVA*APTSCP Trigger: AGGACAGGAAGTTGGAGCGCAGGCCACACCAGCGTG...GATTCTACAGCACTCAGCCATTGCCTCTGCGATGAGGCCACCAGGGACAAACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR GCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGCACAGCCCGTGCAGTTaGCCCCCAGACCAGTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: DCEGPCLSDITSHGVSLLHSPCS*PPDQCL Trigger: CAGGCACTGGTCTGGGGGGCAACTGCACGGGCTGTG...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR GCA 90 bp | TGTGACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCGGCGAGCATGTCCACTaGGTGGGCGAGGAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: CDCEGPCLSDITSHGVSLGEHVH*VGEEQQ Trigger: CTGCTGCTCCTCGCCCACGCAGTGGACATGCTCGCC...GAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR TCA 90 bp | GGATACAAGCTTAATCTCTCTCTTATGTCTGTCTCCGTGTGCGGGGTGGACGGTTACAGAAGTCCTGGCTaGAACAGCTCTCGCACGTGG | + |
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Preference number: 4 (lower is better) Translates to: GYKLNLSLMSVSVCGVDGYRSPG*NSSRTW Trigger: CCACGTGCGAGAGCTGTTTCAGCCAGGACTTCTGTA...ACCGTCCACCCCGCACACGGAGACAGACATAAGAGAGAGATTAAGCTTGTATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGCACCTGTTGGCCTCCTaGCCACGGATCCCAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: DCEGPCLSDITSHGVSLLHLLAS*PRIPKK Trigger: CTTCTTTGGGATCCGTGGCCAGGAGGCCAACAGGTG...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGAGGAAGAGCCTCTGCTaGCAGGTGGAACAGCCATTC | + |
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Preference number: 4 (lower is better) Translates to: DCEGPCLSDITSHGVSLLRKSLC*QVEQPF Trigger: GAATGGCTGTTCCACCTGCCAGCAGAGGCTCTTCCT...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | TTGGGGTGCAGAGAGCCACATGGAGGATACAAGCTTAATCTCTCTCTTATGTCTGGCTCACACTCTTCCTaGCACTCCCGGGTACTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LGCREPHGGYKLNLSLMSGSHSS*HSRVLW Trigger: CCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCC...AGACATAAGAGAGAGATTAAGCTTGTATCCTCCATGTGGCTCTCTGCACCCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GCAGAGAGCCACATGGAGGATACAAGCTTAATCTCTCTCTTATGTCTGTCTCCGATTTCTTGCACCTGTTaGCCTCCTGGCCACGGATCC | + |
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Preference number: 4 (lower is better) Translates to: AESHMEDTSLISLLCLSPISCTC*PPGHGS Trigger: GGATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAAT...CGGAGACAGACATAAGAGAGAGATTAAGCTTGTATCCTCCATGTGGCTCTCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | GACTGTGAAGGTCCCTGTCTGAGTGACATTACTTCTCATGGCGTTTCTCTCCTGTCCTGTTCTTCTGCCTaGGATTTCTTTCTCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: DCEGPCLSDITSHGVSLLSCSSA*DFFLLG Trigger: GCCCAGGAGAAAGAAATCCCAGGCAGAAGAACAGGA...CAGGAGAGAAACGCCATGAGAAGTAATGTCACTCAGACAGGGACCTTCACAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CCA 90 bp | TTGGGGTGCAGAGAGCCACATGGAGGATACAAGCTTAATCTCTCTCTTATGTCTTTCCTGTCCTTACGCTaGCGCCGATCCTTCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: LGCREPHGGYKLNLSLMSFLSLR*RRSFLF Trigger: GAACAGGAAGGATCGGCGCCAGCGTAAGGACAGGAA...AGACATAAGAGAGAGATTAAGCTTGTATCCTCCATGTGGCTCTCTGCACCCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| 3UTR CAA 72 bp | CAGCTCCTAGGCCAAATGGCAGAGGTTAAGACAGACTaGCCATTTGGTTTGTTTTACCTGAAGGCTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: QLLGQMAEVKTD*PFGLFYLKAPP Trigger: GGGAGGAGCCTTCAGGTAAAACAAACCAAATGGCAAGTCTGTCTTAACCTCTGCCATTTGGCCTAGGAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 90 bp | CCCCAAGGGCTCGGCTCACACTCTTCCTGGCACTCCCGGGTACTCTaGTGGGTCAAGGTGCCCGGTGGACAGGAGGGCAGGCACTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: PQGLGSHSSWHSRVL*WVKVPGGQEGRHFP Trigger: AGGGAAGTGCCTGCCCTCCTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCCGAGCCCTTGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 90 bp | ATGCAGGGACTCCAGCTGCCCCAAGGGCTCGGCTCACACTCTTCCTaGCACTCCCGGGTACTCTGGTGGGTCAAGGTGCCCGGTGGACAG | + |
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Preference number: 5 (lower is better) Translates to: MQGLQLPQGLGSHSS*HSRVLWWVKVPGGQ Trigger: CTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCCGAGCCCTTGGGGCAGCTGGAGTCCCTGCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 90 bp | TCCTGGACTCAGATAACACTCGGCAACTCGCCGTCTCTTCCTGCTTaGCCGGGCCAGCCTCCCGGACCCGGGTTTCTAGGCCCCAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SWTQITLGNSPSLPA*PGQPPGPGFLGPSL Trigger: CAGGCTGGGGCCTAGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGAGTCCAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS GCA 90 bp | CACTTCCTGGACTCAGATAACACTCGGCAACTCGCCGTCTCTTCCTaGTTGGCCGGGCCAGCCTCCCGGACCCGGGTTTCTAGGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: HFLDSDNTRQLAVSS*LAGPASRTRVSRPQ Trigger: CTGGGGCCTAGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGAGTCCAGGAAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 90 bp | CAGCTCTCGCACGTGGCCCCACATTTCTTGCACCTGTTGGCCTCCTaGCCACGGATCCCAAAGAAGCCAAGGGGACAGTCGTGCACACAC | + |
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Preference number: 5 (lower is better) Translates to: QLSHVAPHFLHLLAS*PRIPKKPRGQSCTH Trigger: GTGTGTGCACGACTGTCCCCTTGGCTTCTTTGGGATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAATGTGGGGCCACGTGCGAGAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS GCA 90 bp | GCTCACACTCTTCCTGGCACTCCCGGGTACTCTGGTGGGTCAAGGTaGCCGGTGGACAGGAGGGCAGGCACTTCCCTTTGTATAGGTGAA | + |
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Preference number: 5 (lower is better) Translates to: AHTLPGTPGYSGGSR*PVDRRAGTSLCIGE Trigger: TTCACCTATACAAAGGGAAGTGCCTGCCCTCCTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS TCA 90 bp | AGTCGTGCACACACTTGCCGTACTGACGGATGCCTTCACGGCGGATaGAGAGGAAGAGCCTCTGCTGGCAGGTGGAACAGCCATTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: SRAHTCRTDGCLHGG*RGRASAGRWNSHSP Trigger: AGGAGAATGGCTGTTCCACCTGCCAGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCATCCGTCAGTACGGCAAGTGTGTGCACGACT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS TCA 90 bp | ATCCCAAAGAAGCCAAGGGGACAGTCGTGCACACACTTGCCGTACTaGCGGATGCCTTCACGGCGGATGAAGAGGAAGAGCCTCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: IPKKPRGQSCTHLPY*RMPSRRMKRKSLCW Trigger: CCAGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCATCCGTCAGTACGGCAAGTGTGTGCACGACTGTCCCCTTGGCTTCTTTGGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CAA 90 bp | ATGTGGAGAAAGAGCTGGACAGGGGAGAAGCGAGGAGCCCACTGTGGAAGTGCGCAGACCAGTGCCTGCTaGCTTCTTCCTTCGGTACAG | + |
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Preference number: 5 (lower is better) Translates to: MWRKSWTGEKRGAHCGSAQTSAC*LLPSVQ Trigger: CTGTACCGAAGGAAGAAGCAAGCAGGCACTGGTCTG...CGCACTTCCACAGTGGGCTCCTCGCTTCTCCCCTGTCCAGCTCTTTCTCCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS-3UTR CAA 90 bp | GGATACAAGCTTAATCTCTCTCTTATGTCTGTCTCCGTGTGCGGGGTGGACGGTCATTTCTTGCACCTGTaGGCCTCCTGGCCACGGATC | + |
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Preference number: 5 (lower is better) Translates to: GYKLNLSLMSVSVCGVDGHFLHL*ASWPRI Trigger: GATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAATG...ACCGTCCACCCCGCACACGGAGACAGACATAAGAGAGAGATTAAGCTTGTATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS TCA 90 bp | TGTATAGGTGAAACCGCCTTTTGCAGCGGATACAGAAGTCCTGGCTaGAACAGCTCTCGCACGTGGCCCCACATTTCTTGCACCTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: CIGETAFCSGYRSPG*NSSRTWPHISCTCW Trigger: CCAACAGGTGCAAGAAATGTGGGGCCACGTGCGAGAGCTGTTTCAGCCAGGACTTCTGTATCCGCTGCAAAAGGCGGTTTCACCTATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | GGCTCACACTCTTCCTGGCACTCCCGGGTACTCTGGTaGGTCAAGGTGCCCGGTGGACAGGAGGGCAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GSHSSWHSRVLW*VKVPGGQEGRH Trigger: GTGCCTGCCCTCCTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | CTCGGCTCACACTCTTCCTGGCACTCCCGGGTACTCTaGTGGGTCAAGGTGCCCGGTGGACAGGAGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LGSHSSWHSRVL*WVKVPGGQEGR Trigger: CCTGCCCTCCTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCCGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | CTCCAGCTGCCCCAAGGGCTCGGCTCACACTCTTCCTaGCACTCCCGGGTACTCTGGTGGGTCAAGGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LQLPQGLGSHSS*HSRVLWWVKVP Trigger: GGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAGCCGAGCCCTTGGGGCAGCTGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS GCA 72 bp | GGCCCCAGCCTGAGCCACAGGTCTTCCCATTGTGTATaGAGGGACTCCAGCTGCCCCAAGGGCTCGGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: GPSLSHRSSHCV*RDSSCPKGSAH Trigger: GTGAGCCGAGCCCTTGGGGCAGCTGGAGTCCCTGCATACACAATGGGAAGACCTGTGGCTCAGGCTGGGGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | CAGATAACACTCGGCAACTCGCCGTCTCTTCCTGCTTaGCCGGGCCAGCCTCCCGGACCCGGGTTTCTAGGC | + |
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Preference number: 6 (lower is better) Translates to: QITLGNSPSLPA*PGQPPGPGFLG Trigger: GCCTAGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CAA 90 bp | TTCCTGGACTCAGATAACACTCGGCAACTCGCCGTCTCTTCCTGCTaGGCCGGGCCAGCCTCCCGGACCCGGGTTTCTAGGCCCCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: FLDSDNTRQLAVSSC*AGPASRTRVSRPQP Trigger: AGGCTGGGGCCTAGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGAGTCCAGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS GCA 72 bp | GACTCAGATAACACTCGGCAACTCGCCGTCTCTTCCTaGTTGGCCGGGCCAGCCTCCCGGACCCGGGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: DSDNTRQLAVSS*LAGPASRTRVS Trigger: AGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGAGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CAA 72 bp | TCAGATAACACTCGGCAACTCGCCGTCTCTTCCTGCTaGGCCGGGCCAGCCTCCCGGACCCGGGTTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: SDNTRQLAVSSC*AGPASRTRVSR Trigger: CCTAGAAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | AGCTCTCGCACGTGGCCCCACATTTCTTGCACCTGTTaGCCTCCTGGCCACGGATCCCAAAGAAGCCAAGGG | + |
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Preference number: 6 (lower is better) Translates to: SSRTWPHISCTC*PPGHGSQRSQG Trigger: CCCTTGGCTTCTTTGGGATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAATGTGGGGCCACGTGCGAGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CAA 72 bp | CAGCTCTCGCACGTGGCCCCACATTTCTTGCACCTGTaGGCCTCCTGGCCACGGATCCCAAAGAAGCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: QLSHVAPHFLHL*ASWPRIPKKPR Trigger: CCTTGGCTTCTTTGGGATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAATGTGGGGCCACGTGCGAGAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS GCA 72 bp | CGGATGCCTTCACGGCGGATGAAGAGGAAGAGCCTCTaGTGGCAGGTGGAACAGCCATTCTCCTCCGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: RMPSRRMKRKSL*WQVEQPFSSEH Trigger: ATGCTCGGAGGAGAATGGCTGTTCCACCTGCCAGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCATCCG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS TCA 72 bp | AAGCCAAGGGGACAGTCGTGCACACACTTGCCGTACTaGCGGATGCCTTCACGGCGGATGAAGAGGAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: KPRGQSCTHLPY*RMPSRRMKRKS Trigger: GCTCTTCCTCTTCATCCGCCGTGAAGGCATCCGTCAGTACGGCAAGTGTGTGCACGACTGTCCCCTTGGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | TGGTGTGGCCTGCGCTCCAACTTCCTGTCCTTACGCTaGCGCCGATCCTTCCTGTTCTTCTGCCTGGGATTT | + |
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Preference number: 6 (lower is better) Translates to: WCGLRSNFLSLR*RRSFLFFCLGF Trigger: AAATCCCAGGCAGAAGAACAGGAAGGATCGGCGCCAGCGTAAGGACAGGAAGTTGGAGCGCAGGCCACACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS CCA 72 bp | ATGCCTTCACGGCGGATGAAGAGGAAGAGCCTCTGCTaGCAGGTGGAACAGCCATTCTCCTCCGAGCATATG | + |
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Preference number: 6 (lower is better) Translates to: MPSRRMKRKSLC*QVEQPFSSEHM Trigger: CATATGCTCGGAGGAGAATGGCTGTTCCACCTGCCAGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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| CDS TCA 72 bp | GAAACCGCCTTTTGCAGCGGATACAGAAGTCCTGGCTaGAACAGCTCTCGCACGTGGCCCCACATTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: ETAFCSGYRSPG*NSSRTWPHISC Trigger: GCAAGAAATGTGGGGCCACGTGCGAGAGCTGTTTCAGCCAGGACTTCTGTATCCGCTGCAAAAGGCGGTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042217.4 |
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