RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RSPH3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023806

Ensembl transcript IDs: ENSMUST00000024572.10, ENSMUST00000231794.2

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ATCCCCACCCCACGCAGCCTTCAGGAGTATGCTCAGGTGTTCTTTACAGAGTCATTTGTAAAGCCTGGATaGGTCATGTGCCTGCCTTGC +
Preference number: 2 (lower is better)
Translates to: IPTPRSLQEYAQVFFTESFVKPG*VMCLPC
Trigger: GCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA...TGACTCTGTAAAGAACACCTGAGCATACTCCTGAAGGCTGCGTGGGGTGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
3UTR GCA 72 bp CAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTaGATTATAACTGACCAGATGTTGAGCTGCTCTCTG +
Preference number: 3 (lower is better)
Translates to: QFVKPGWVMCLP*IITDQMLSCSL
Trigger: CAGAGAGCAGCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCGTCGGGCGCGCTGGTaGAGTGGCGGCTTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMRRARW*SGGFLA
Trigger: TGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp ATCCCCACCCCACGCAGCCTTCAGGAGTATGCTCAGGTGTTCTTTACAGAGTCAGCCCCAGCAGCAGGTTaGTGGTACCCTCAGGTTTCT +
Preference number: 4 (lower is better)
Translates to: IPTPRSLQEYAQVFFTESAPAAG*WYPQVS
Trigger: AGAAACCTGAGGGTACCAGCAACCTGCTGCTGGGGC...TGACTCTGTAAAGAACACCTGAGCATACTCCTGAAGGCTGCGTGGGGTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCGGGCTCAGGCGTTCGTaGTTTGAGCTGCTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSGLRRS*FELLLG
Trigger: GCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCC...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATGGGCTCAGGCGTTCGTaGTTTGAGCTGCTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHGLRRS*FELLLG
Trigger: GCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCC...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGC +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHACCCR*SSRGSG
Trigger: GCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGC...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTGCCAAGGGCAGGGATaGTGCGACCCGAGAGGACGC +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMCQGQG*CDPRGR
Trigger: GCGTCCTCTCGGGTCGCAGCATCCCTGCCCTTGGCA...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATGCAGTTCCGGCCAGCTaGGTTTCCCGAAGGGTCTGT +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHAVPAS*VSRRVC
Trigger: ACAGACCCTTCGGGAAACCCAGCTGGCCGGAACTGC...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCCAAGAGCCCTTCTCCTaGCCTGCTGCTGTCGCTGAA +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSQEPFS*PAAVAE
Trigger: TTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTG...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp GCTGCAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCGCAGTGGCGGCTTCTTaGCAGGCAGGGCCGCCCAGA +
Preference number: 4 (lower is better)
Translates to: AAAGGCLILYKQGLQFYPAVAAS*QAGPPR
Trigger: TCTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGC...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGC +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMACCCR*SSRGSG
Trigger: GCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGC...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATCAGTTTTGGCAGGAATaGAGAGGGGTGTGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHQFWQE*RGVWVV
Trigger: GACCACCCACACCCCTCTTCATTCCTGCCAAAACTG...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCCAGTTTTGGCAGGAATaGAGAGGGGTGTGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSQFWQE*RGVWVV
Trigger: GACCACCCACACCCCTCTTCATTCCTGCCAAAACTG...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGGGTGAAGGTGGGCTCTaGAGCAGGTTGGGGCTAAGG +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMGEGGL*SRLGLR
Trigger: CCTTAGCCCCAACCTGCTTCAGAGCCCACCTTCACC...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCGAAGAGGGGTGTGGGTaGTCTGTCCAGAAACGCATC +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSEEGCG*SVQKRI
Trigger: GATGCGTTTCTGGACAGACCACCCACACCCCTCTTC...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp ATCCCCACCCCACGCAGCCTTCAGGAGTATGCTCAGGTGTTCTTTACAGAGTCACTCCCAGGATCTGAGTaGCCACATCTTTGCCAGTTT +
Preference number: 4 (lower is better)
Translates to: IPTPRSLQEYAQVFFTESLPGSE*PHLCQF
Trigger: AAACTGGCAAAGATGTGGCCACTCAGATCCTGGGAG...TGACTCTGTAAAGAACACCTGAGCATACTCCTGAAGGCTGCGTGGGGTGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR TCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCATCACATTTGTCTTCTaGCCAGGCGGCATGGCTTCC +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSITFVF*PGGMAS
Trigger: GGAAGCCATGCCGCCTGGTCAGAAGACAAATGTGAT...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATGTTTGTATGTCCACATaGTTTCTGCCCTCCACGGGC +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHVCMST*FLPSTG
Trigger: GCCCGTGGAGGGCAGAAAGCATGTGGACATACAAAC...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCCCTTATCTCTTCATATaGGTACTGCCTGGCCCGCAG +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSPYLFI*VLPGPQ
Trigger: CTGCGGGCCAGGCAGTACGCATATGAAGAGATAAGG...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATCCTTATCTCTTCATATaGGTACTGCCTGGCCCGCAG +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHPYLFI*VLPGPQ
Trigger: CTGCGGGCCAGGCAGTACGCATATGAAGAGATAAGG...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCAAGAGCCCTTCTCCTaGCCTGCTGCTGTCGCTGAA +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMQEPFS*PAAVAE
Trigger: TTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCCTGGGCTCGTTTTCTaGCAAGAGCCCTTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMPGLVF*QEPFSW
Trigger: CCAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATGGTTTGAGCTGCTCCTaGGCTCGTTTTCTGGCAAGA +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHGLSCS*ARFLAR
Trigger: TCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACC...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCACAGGCTTCCTTTCTTaGGATGGTGCTGGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSTGFLS*DGAGCE
Trigger: CTCACAGCCAGCACCATCCCAAGAAAGGAAGCCTGT...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp GCTGCAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCACCCGAGGTTCCGCCTaGAGGCAGGAACTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: AAAGGCLILYKQGLQFYPTRGSA*RQELQA
Trigger: TGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGT...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCGGTTCTTCAACTGGCTaGAAAATGCTGTCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSGSSTG*KMLSRW
Trigger: CCACCGAGACAGCATTTTGCAGCCAGTTGAAGAACC...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCTGTCCTGTGGGCAGTaGATAGGTGTTGCCTCGGAT +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMLSCGQ*IGVASD
Trigger: ATCCGAGGCAACACCTATGCACTGCCCACAGGACAG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGGAAGAGGGGTGTGGGTaGTCTGTCCAGAAACGCATC +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMEEGCG*SVQKRI
Trigger: GATGCGTTTCTGGACAGACCACCCACACCCCTCTTC...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATCTCCCAGGATCTGAGTaGCCACATCTTTGCCAGTTT +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHLPGSE*PHLCQF
Trigger: AAACTGGCAAAGATGTGGCCACTCAGATCCTGGGAG...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGGGTTTGAGCTGCTCCTaGGCTCGTTTTCTGGCAAGA +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMGLSCS*ARFLAR
Trigger: TCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACC...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp GCTGCAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCCTGTCCTGTGGGCAGTaGATAGGTGTTGCCTCGGAT +
Preference number: 4 (lower is better)
Translates to: AAAGGCLILYKQGLQFYPLSCGQ*IGVASD
Trigger: ATCCGAGGCAACACCTATGCACTGCCCACAGGACAG...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTGCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CCA 90 bp AAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGAGCAGAAACGCATCTGTCTaGCATTCCATGTCGACTTCA +
Preference number: 4 (lower is better)
Translates to: KPGWVMCLPCIITDQMLSRNASV*HSMSTS
Trigger: TGAAGTCGACATGGAATGCCAGACAGATGCGTTTCT...GCTCAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp GCTGCAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCGTTTGTATGTCCACATaGTTTCTGCCCTCCACGGGC +
Preference number: 4 (lower is better)
Translates to: AAAGGCLILYKQGLQFYPVCMST*FLPSTG
Trigger: GCCCGTGGAGGGCAGAAAGCATGTGGACATACAAAC...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATCAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTT +
Preference number: 4 (lower is better)
Translates to: WLSITVCKAWMGHVPALHQFFPP*CVPWIF
Trigger: AAAAATCCATGGAACACAGCATGGTGGGAAGAACTG...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR GCA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTT +
Preference number: 4 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMQFFPP*CVPWIF
Trigger: AAAAATCCATGGAACACAGCATGGTGGGAAGAACTG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS GCA 90 bp TCCGGCTCGCGGCCCCGCCCACCTGCTGGTCGTCGGGCGCGCTGGTaGAGTGGCGGCTTCTTGGCAGGCAGGGCCGCCCAGATGTTGGTG +
Preference number: 5 (lower is better)
Translates to: SGSRPRPPAGRRARW*SGGFLAGRAAQMLV
Trigger: CACCAACATCTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 90 bp ACTTCCGGCTCGCGGCCCCGCCCACCTGCTGGTCGTCGGGCGCGCTaGTGCAGTGGCGGCTTCTTGGCAGGCAGGGCCGCCCAGATGTTG +
Preference number: 5 (lower is better)
Translates to: TSGSRPRPPAGRRAR*CSGGFLAGRAAQML
Trigger: CAACATCTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS GCA 90 bp AGGGTCTGTAGTAAAGGGTACTTCCGGCTCGCGGCCCCGCCCACCTaGTGGTCGTCGGGCGCGCTGGTGCAGTGGCGGCTTCTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: RVCSKGYFRLAAPPT*WSSGALVQWRLLGR
Trigger: CCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGTACCCTTTACTACAGACCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 90 bp GTCTGTAGTAAAGGGTACTTCCGGCTCGCGGCCCCGCCCACCTGCTaGTCGTCGGGCGCGCTGGTGCAGTGGCGGCTTCTTGGCAGGCAG +
Preference number: 5 (lower is better)
Translates to: VCSKGYFRLAAPPTC*SSGALVQWRLLGRQ
Trigger: CTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGTACCCTTTACTACAGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 90 bp GTCAGTTGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTaGAGGCAGGAACTCCAGGCAGTTCCGGCCAGCTGGGTTTCCCGA +
Preference number: 5 (lower is better)
Translates to: VSCAPIGCRATRGSA*RQELQAVPASWVSR
Trigger: TCGGGAAACCCAGCTGGCCGGAACTGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS GCA 90 bp GTTTCTCTCGGGAACGTGGAGGGAGTCAGTTGCGCCCCCATCGGTTaGCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAACTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: VSLGNVEGVSCAPIG*RATRGSAWRQELQA
Trigger: TGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS GCA 90 bp TGCTGGTACCCTCAGGTTTCTCTCGGGAACGTGGAGGGAGTCAGTTaGGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTGGAGG +
Preference number: 5 (lower is better)
Translates to: CWYPQVSLGNVEGVS*APIGCRATRGSAWR
Trigger: CCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAACCTGAGGGTACCAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS TCA 90 bp GCTCGTTTTCTGGCAAGAGCCCTTCTCCTGGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGCTGTCCAGGCACCTGTCCTGTGGGC +
Preference number: 5 (lower is better)
Translates to: ARFLARALLLACCCR*SSRGSGCPGTCPVG
Trigger: GCCCACAGGACAGGTGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTGCCAGAAAACGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp TTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGTTTGAGCTGCTCCTaGGCTCGTTTTCTGGCAAGAGCCCTTCTCCTGGCCTGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: FLPSTGSGVRGLSCS*ARFLARALLLACCC
Trigger: ACAGCAGCAGGCCAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS TCA 90 bp TGTCCACATGCTTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGTTTaGGCTGCTCCTGGGCTCGTTTTCTGGCAAGAGCCCTTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: CPHAFCPPRAQAFVV*AAPGLVFWQEPFSW
Trigger: CCAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAGAAAGCATGTGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTGCAGTGGCGGCTTCTaGGCAGGCAGGGCCGCCCAG +
Preference number: 5 (lower is better)
Translates to: WLSITVCKAWMGHVPALHCSGGF*AGRAAQ
Trigger: CTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCA...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTGCCTGGCCCGCAGGTaGGCCAGCTCCTCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: WLSITVCKAWMGHVPALHCLARR*ASSSSS
Trigger: GGAAGAGGAGGAGCTGGCCAACCTGCGGGCCAGGCA...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp GTCGCTGAAGCTCTAGAGGATCAGGCTGTCCAGGCACCTGTCCTGTaGGCAGTGCATAGGTGTTGCCTCGGATCACCCTTCTGTCATACA +
Preference number: 5 (lower is better)
Translates to: VAEALEDQAVQAPVL*AVHRCCLGSPFCHT
Trigger: TGTATGACAGAAGGGTGATCCGAGGCAACACCTATGCACTGCCCACAGGACAGGTGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTGCCTGGCCCGCAGGTaGGCCAGCTCCTCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMCLARR*ASSSSS
Trigger: GGAAGAGGAGGAGCTGGCCAACCTGCGGGCCAGGCA...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp CCTTCTGTCATACATGATGTTCCCGTAACTCATAGGTTCTTCAACTaGCTGCAAAATGCTGTCTCGGTGGCGGCGGCGCTGGCAAGCCAC +
Preference number: 5 (lower is better)
Translates to: PSVIHDVPVTHRFFN*LQNAVSVAAALASH
Trigger: GTGGCTTGCCAGCGCCGCCGCCACCGAGACAGCATTTTGCAGCCAGTTGAAGAACCTATGAGTTACGGGAACATCATGTATGACAGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp CCACGTTCCTTATCTCTTCATATGCGTACTGCCTGGCCCGCAGGTTaGCCAGCTCCTCCTCTTCCATCACCTCTAGAAGGGACTGTTCAA +
Preference number: 5 (lower is better)
Translates to: PRSLSLHMRTAWPAG*PAPPLPSPLEGTVQ
Trigger: TTGAACAGTCCCTTCTAGAGGTGATGGAAGAGGAGGAGCTGGCCAACCTGCGGGCCAGGCAGTACGCATATGAAGAGATAAGGAACGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTCGGTGCCTTCTCTCTaGCTCTTCCAGTCGCTGCAC +
Preference number: 5 (lower is better)
Translates to: WLSITVCKAWMGHVPALHSVPSL*LFQSLH
Trigger: GTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGA...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp ATCCCCACCCCACGCAGCCTTCAGGAGTATGCTCAGGTGTTCTTTACAGAGTCACCACTATTCCTGAGTTaGTCAAAGACAGACGGGAGG +
Preference number: 5 (lower is better)
Translates to: IPTPRSLQEYAQVFFTESPLFLS*SKTDGR
Trigger: CCTCCCGTCTGTCTTTGACAAACTCAGGAATAGTGG...TGACTCTGTAAAGAACACCTGAGCATACTCCTGAAGGCTGCGTGGGGTGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTCGGTGCCTTCTCTCTaGCTCTTCCAGTCGCTGCAC +
Preference number: 5 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMSVPSL*LFQSLH
Trigger: GTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGA...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp GGAATGAAGAGGGGTGTGGGTGGTCTGTCCAGAAACGCATCTGTCTaGCATTCCATGTCGACTTCAACTATGCGATCAGCAATTTCTTCA +
Preference number: 5 (lower is better)
Translates to: GMKRGVGGLSRNASV*HSMSTSTMRSAISS
Trigger: TGAAGAAATTGCTGATCGCATAGTTGAAGTCGACATGGAATGCCAGACAGATGCGTTTCTGGACAGACCACCCACACCCCTCTTCATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TGGCTGAGTATCACAGTTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATACATCTTTGCCAGTTTaGGCAGGAATGAAGAGGGGT +
Preference number: 5 (lower is better)
Translates to: WLSITVCKAWMGHVPALHTSLPV*AGMKRG
Trigger: ACCCCTCTTCATTCCTGCCAAAACTGGCAAAGATGT...ATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAACTGTGATACTCAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS-3UTR CAA 90 bp TTTGTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGCCACTATTCCTGAGTTaGTCAAAGACAGACGGGAGG +
Preference number: 5 (lower is better)
Translates to: FVKPGWVMCLPCIITDQMPLFLS*SKTDGR
Trigger: CCTCCCGTCTGTCTTTGACAAACTCAGGAATAGTGG...CATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp GCGAATATCAGAGCTGAGATCTTCTGTAACGTCTCATTCCGCTTATaGACAATCTCCCACTGCTGTTTCTTACGGCGCTCCTTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: ANIRAEIFCNVSFRL*TISHCCFLRRSFSS
Trigger: AGAAGAAAAGGAGCGCCGTAAGAAACAGCAGTGGGAGATTGTCCATAAGCGGAATGAGACGTTACAGAAGATCTCAGCTCTGATATTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS GCA 90 bp CAACCACGTCGCGAATTAACATGTCAAGCACAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTTCAACTTCATTCATTAGCCATGGGA +
Preference number: 5 (lower is better)
Translates to: QPRRELTCQAQFFPP*CVPWIFQLHSLAMG
Trigger: TCCCATGGCTAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATTCGCGACGTGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 90 bp GAATTAACATGTCAAGCACAGTTCTTCCCACCATGCTGTGTTCCATaGATTTTTCAACTTCATTCATTAGCCATGGGAGGAATCCTACCT +
Preference number: 5 (lower is better)
Translates to: ELTCQAQFFPPCCVP*IFQLHSLAMGGILP
Trigger: AGGTAGGATTCCTCCCATGGCTAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS GCA 72 bp CGGCCCCGCCCACCTGCTGGTCGTCGGGCGCGCTGGTaGAGTGGCGGCTTCTTGGCAGGCAGGGCCGCCCAG +
Preference number: 6 (lower is better)
Translates to: RPRPPAGRRARW*SGGFLAGRAAQ
Trigger: CTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 72 bp GCTGGTCGTCGGGCGCGCTGGTGCAGTGGCGGCTTCTaGGCAGGCAGGGCCGCCCAGATGTTGGTGGCGGCC +
Preference number: 6 (lower is better)
Translates to: AGRRARWCSGGF*AGRAAQMLVAA
Trigger: GGCCGCCACCAACATCTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 72 bp CTGGTCGTCGGGCGCGCTGGTGCAGTGGCGGCTTCTTaGCAGGCAGGGCCGCCCAGATGTTGGTGGCGGCCA +
Preference number: 6 (lower is better)
Translates to: LVVGRAGAVAAS*QAGPPRCWWRP
Trigger: TGGCCGCCACCAACATCTGGGCGGCCCTGCCTGCCAAGAAGCCGCCACTGCACCAGCGCGCCCGACGACCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 72 bp GCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTaGAGGCAGGAACTCCAGGCAGTTCCGGCCAGCTGG +
Preference number: 6 (lower is better)
Translates to: APIGCRATRGSA*RQELQAVPASW
Trigger: CCAGCTGGCCGGAACTGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 72 bp CGGGAACGTGGAGGGAGTCAGTTGCGCCCCCATCGGTaGCCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGA +
Preference number: 6 (lower is better)
Translates to: RERGGSQLRPHR*PSNPRFRLEAG
Trigger: TCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 72 bp GAAGCGGGCGGGACGCGAGGGGGCCCCAGCAGCAGGTaGCTGGTACCCTCAGGTTTCTCTCGGGAACGTGGA +
Preference number: 6 (lower is better)
Translates to: EAGGTRGGPSSR*LVPSGFSRERG
Trigger: TCCACGTTCCCGAGAGAAACCTGAGGGTACCAGCAACCTGCTGCTGGGGCCCCCTCGCGTCCCGCCCGCTTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS GCA 72 bp GGGAACGTGGAGGGAGTCAGTTGCGCCCCCATCGGTTaGCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAA +
Preference number: 6 (lower is better)
Translates to: GNVEGVSCAPIG*RATRGSAWRQE
Trigger: TTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 90 bp GGTTTCTCTCGGGAACGTGGAGGGAGTCAGTTGCGCCCCCATCGGTaGCCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAACTCCAGGC +
Preference number: 6 (lower is better)
Translates to: GFSRERGGSQLRPHR*PSNPRFRLEAGTPG
Trigger: GCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS TCA 72 bp CACGGCCCGGGGCCTGCTGGAATAGGTGTAGAGGCCTaGGGCCTCGGCTGTCCGAGGGTTACGGTCTGTCAT +
Preference number: 6 (lower is better)
Translates to: HGPGPAGIGVEA*GLGCPRVTVCH
Trigger: ATGACAGACCGTAACCCTCGGACAGCCGAGGCCTCAGGCCTCTACACCTATTCCAGCAGGCCCCGGGCCGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 72 bp ATAGGTTCTTCAACTGGCTGCAAAATGCTGTCTCGGTaGCGGCGGCGCTGGCAAGCCACGGCCCGGGGCCTG +
Preference number: 6 (lower is better)
Translates to: IGSSTGCKMLSR*RRRWQATARGL
Trigger: CAGGCCCCGGGCCGTGGCTTGCCAGCGCCGCCGCCACCGAGACAGCATTTTGCAGCCAGTTGAAGAACCTAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS GCA 72 bp CCTCAGGTTTCTCTCGGGAACGTGGAGGGAGTCAGTTaGGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCC +
Preference number: 6 (lower is better)
Translates to: PQVSLGNVEGVS*APIGCRATRGS
Trigger: GGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAACCTGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 72 bp CCCTCAGGTTTCTCTCGGGAACGTGGAGGGAGTCAGTaGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTC +
Preference number: 6 (lower is better)
Translates to: PSGFSRERGGSQ*RPHRLPSNPRF
Trigger: GAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAACCTGAGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CAA 90 bp TTGCTGGTACCCTCAGGTTTCTCTCGGGAACGTGGAGGGAGTCAGTaGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTGGAG +
Preference number: 6 (lower is better)
Translates to: LLVPSGFSRERGGSQ*RPHRLPSNPRFRLE
Trigger: CTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGACTCCCTCCACGTTCCCGAGAGAAACCTGAGGGTACCAGCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231794.2
CDS CCA 72 bp TCCACGGGCTCAGGCGTTCGTGGTTTGAGCTGCTCCTaGGCTCGTTTTCTGGCAAGAGCCCTTCTCCTGGCC +
Preference number: 6 (lower is better)
Translates to: STGSGVRGLSCS*ARFLARALLLA
Trigger: GGCCAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CAA 90 bp ATGTCCACATGCTTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGTTaGAGCTGCTCCTGGGCTCGTTTTCTGGCAAGAGCCCTTCTCCTG +
Preference number: 6 (lower is better)
Translates to: MSTCFLPSTGSGVRG*SCSWARFLARALLL
Trigger: CAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAGAAAGCATGTGGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CAA 90 bp TCCACGTTCCTTATCTCTTCATATGCGTACTGCCTGGCCCGCAGGTaGGCCAGCTCCTCCTCTTCCATCACCTCTAGAAGGGACTGTTCA +
Preference number: 6 (lower is better)
Translates to: STFLISSYAYCLARR*ASSSSSITSRRDCS
Trigger: TGAACAGTCCCTTCTAGAGGTGATGGAAGAGGAGGAGCTGGCCAACCTGCGGGCCAGGCAGTACGCATATGAAGAGATAAGGAACGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CAA 90 bp CTGCTGTTTCTTACGGCGCTCCTTTTCTTCTCGGTGCCTTCTCTCTaGCTCTTCCAGTCGCTGCACTTCGGCCAGCTCCACGTTCCTTAT +
Preference number: 6 (lower is better)
Translates to: LLFLTALLFFSVPSL*LFQSLHFGQLHVPY
Trigger: ATAAGGAACGTGGAGCTGGCCGAAGTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGAGAAGAAAAGGAGCGCCGTAAGAAACAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 72 bp ATACATGATGTTCCCGTAACTCATAGGTTCTTCAACTaGCTGCAAAATGCTGTCTCGGTGGCGGCGGCGCTG +
Preference number: 6 (lower is better)
Translates to: IHDVPVTHRFFN*LQNAVSVAAAL
Trigger: CAGCGCCGCCGCCACCGAGACAGCATTTTGCAGCCAGTTGAAGAACCTATGAGTTACGGGAACATCATGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 72 bp AGGGGTGTGGGTGGTCTGTCCAGAAACGCATCTGTCTaGCATTCCATGTCGACTTCAACTATGCGATCAGCA +
Preference number: 6 (lower is better)
Translates to: RGVGGLSRNASV*HSMSTSTMRSA
Trigger: TGCTGATCGCATAGTTGAAGTCGACATGGAATGCCAGACAGATGCGTTTCTGGACAGACCACCCACACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 72 bp AGAGCTGAGATCTTCTGTAACGTCTCATTCCGCTTATaGACAATCTCCCACTGCTGTTTCTTACGGCGCTCC +
Preference number: 6 (lower is better)
Translates to: RAEIFCNVSFRL*TISHCCFLRRS
Trigger: GGAGCGCCGTAAGAAACAGCAGTGGGAGATTGTCCATAAGCGGAATGAGACGTTACAGAAGATCTCAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS CCA 72 bp TGTCAAGCACAGTTCTTCCCACCATGCTGTGTTCCATaGATTTTTCAACTTCATTCATTAGCCATGGGAGGA +
Preference number: 6 (lower is better)
Translates to: CQAQFFPPCCVP*IFQLHSLAMGG
Trigger: TCCTCCCATGGCTAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2
CDS GCA 72 bp CGCGAATTAACATGTCAAGCACAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTTCAACTTCATTCATTA +
Preference number: 6 (lower is better)
Translates to: RELTCQAQFFPP*CVPWIFQLHSL
Trigger: TAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATTCGCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024572.10
ENSMUST00000231794.2