Pregenerated sensors for RSPH3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073471Ensembl transcript IDs: ENSMUST00000097423.3, ENSMUST00000231900.2, ENSMUST00000232223.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATCCCCACCCCACGCAGCCTTCAGGAGTGTGCTCAGGTGTTGTTTACAGAGTCAGACAAGCTTAATGACTaGCAGCACCTATTATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: IPTPRSLQECAQVLFTESDKLND*QHLLSQ Trigger: CTGAGATAATAGGTGCTGTCAGTCATTAAGCTTGTC...TGACTCTGTAAACAACACCTGAGCACACTCCTGAAGGCTGCGTGGGGTGGGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCCAACAGAGAAGACAAGCTTAATGACTGACAGCACCTATTATCTCAGTGAGGCCTTGCATTATAACTaGCCAGATGTTGAGCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: FPTEKTSLMTDSTYYLSEALHYN*PDVELL Trigger: GAGCAGCTCAACATCTGGTCAGTTATAATGCAAGGC...CTCACTGAGATAATAGGTGCTGTCAGTCATTAAGCTTGTCTTCTCTGTTGGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGTAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCCAGCCTTCAGGAGTGTaGTCAGGTGTTGTTTACAGA | + |
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Preference number: 2 (lower is better) Translates to: AVAGGCLILYKQGLQFYPQPSGV*SGVVYR Trigger: TCTGTAAACAACACCTGAGCACACTCCTGAAGGCTG...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTACAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGTAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCTATCTCAGTGAGATATaGGACCTACCAAAAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: AVAGGCLILYKQGLQFYPYLSEI*DLPKRS Trigger: GCTTCTTTTTGGTAGGTCTCATATCTCACTGAGATA...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTACAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS-3UTR CCA 90 bp | GTAAAGCCTGGATGGGTCATGTGCCTGCCTTGCATTATAACTGACCAGATGTTGGCAGTGGCCGCTTCTTaGCAGGCAGGGCCGCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: VKPGWVMCLPCIITDQMLAVAAS*QAGPPK Trigger: TTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGC...CAACATCTGGTCAGTTATAATGCAAGGCAGGCACATGACCCATCCAGGCTTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS-3UTR CCA 90 bp | TTTCCAACAGAGAAGACAAGCTTAATGACTGACAGCACCTATTATCTCAGTGAGGGCGCGCTGGTGCAGTaGCCGCTTCTTGGCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FPTEKTSLMTDSTYYLSEGALVQ*PLLGRQ Trigger: CTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCC...CTCACTGAGATAATAGGTGCTGTCAGTCATTAAGCTTGTCTTCTCTGTTGGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS-3UTR CCA 90 bp | GCTGTAGCAGGTGGCTGTTTAATTTTATACAAACAAGGACTCCAATTTTACCCCGGCGCGCTGGTGCAGTaGCCGCTTCTTGGCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: AVAGGCLILYKQGLQFYPGALVQ*PLLGRQ Trigger: CTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCC...GGGGTAAAATTGGAGTCCTTGTTTGTATAAAATTAAACAGCCACCTGCTACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS-3UTR CCA 90 bp | AAGCTAGCCCACAAGAAGAGGATTACGAGAGATACATATATGAGAGTAATGGGAGCAGTGGCCGCTTCTTaGCAGGCAGGGCCGCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: KLAHKKRITRDTYMRVMGAVAAS*QAGPPK Trigger: TTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGC...TCCCATTACTCTCATATATGTATCTCTCGTAATCCTCTTCTTGTGGGCTAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | TCCGGCTCGCGGCCCCGCCCACCTGCTGGTCGTCGGGCGCGCTGGTaGAGTGGCCGCTTCTTGGCAGGCAGGGCCGCCCAAATGTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SGSRPRPPAGRRARW*SGRFLAGRAAQMLV Trigger: CACCAACATTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 90 bp | ACTTCCGGCTCGCGGCCCCGCCCACCTGCTGGTCGTCGGGCGCGCTaGTGCAGTGGCCGCTTCTTGGCAGGCAGGGCCGCCCAAATGTTG | + |
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Preference number: 5 (lower is better) Translates to: TSGSRPRPPAGRRAR*CSGRFLAGRAAQML Trigger: CAACATTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | AGGACGCCGCTCTCGGAGAAACGGGCGGAGCGCGAGGGGGACAGTTaGGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: RTPLSEKRAEREGDS*APIGCRATRGSAWR Trigger: CCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTCCGAGAGCGGCGTCCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | AGGGTCTGTAGTAAAGGGCACTTCCGGCTCGCGGCCCCGCCCACCTaGTGGTCGTCGGGCGCGCTGGTGCAGTGGCCGCTTCTTGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: RVCSKGHFRLAAPPT*WSSGALVQWPLLGR Trigger: CCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGTGCCCTTTACTACAGACCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 90 bp | GTCTGTAGTAAAGGGCACTTCCGGCTCGCGGCCCCGCCCACCTGCTaGTCGTCGGGCGCGCTGGTGCAGTGGCCGCTTCTTGGCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: VCSKGHFRLAAPPTC*SSGALVQWPLLGRQ Trigger: CTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGGGGCCGCGAGCCGGAAGTGCCCTTTACTACAGAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | GAGAAACGGGCGGAGCGCGAGGGGGACAGTTGCGCCCCCATCGGTTaGCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAACTCCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: EKRAEREGDSCAPIG*RATRGSAWRQELQA Trigger: TGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 90 bp | GACAGTTGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTaGAGGCAGGAACTCCAGGCAGTTCCGGCCAGCTGGGTTTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: DSCAPIGCRATRGSA*RQELQAVPASWVSG Trigger: TCCGGAAACCCAGCTGGCCGGAACTGCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | ACATGCTTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGTTTGAGCTaGTCCTGGGCTCGTTTTCTGGCAAGAGCCCTTCTCCTGGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TCFLPSTGSGVRGLS*SWARFLARALLLAC Trigger: GCAGGCCAGGAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAGAAAGCATGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS TCA 90 bp | GCTCGTTTTCTGGCAAGAGCCCTTCTCCTGGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGCTGTCCAGGCTGTCCTGTGGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: ARFLARALLLACCCR*SSRGSGCPGCPVGS Trigger: ACTGCCCACAGGACAGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTGCCAGAAAACGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232223.2 |
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| CDS CCA 90 bp | GCTGTCGCTGAAGCTCTAGAGGATCAGGCTGTCCAGGCTGTCCTGTaGGCAGTGCATAGGTGTTGCCTCGGATCACCCTTCTGTCATACA | + |
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Preference number: 5 (lower is better) Translates to: AVAEALEDQAVQAVL*AVHRCCLGSPFCHT Trigger: TGTATGACAGAAGGGTGATCCGAGGCAACACCTATGCACTGCCCACAGGACAGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232223.2 |
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| CDS GCA 90 bp | TGGGATGGTGCTGGCTGTGAGGAGACTCTGTCTAAAACTGGCTTCTaGGTGTGCAATGTGGTCACCGAGGGATCTGTCACTGTGTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: WDGAGCEETLSKTGF*VCNVVTEGSVTVLG Trigger: TCCTAACACAGTGACAGATCCCTCGGTGACCACATTGCACACGCAGAAGCCAGTTTTAGACAGAGTCTCCTCACAGCCAGCACCATCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | GAGATCTTCTGTAACGTCTCATTCCGCTTATGGACAATCTCCCACTaGTGTTTCTTACGGCGCTCCTTTTCTTCTCGGTGCCTTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: EIFCNVSFRLWTISH*CFLRRSFSSRCLLS Trigger: AGAGAGAAGGCACCGAGAAGAAAAGGAGCGCCGTAAGAAACAGCAGTGGGAGATTGTCCATAAGCGGAATGAGACGTTACAGAAGATCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | TTCCTGAGTTTGTCAAAGACAGACGGGAGGAGGTTAGCCAGGTACTaGCGAGCGAATATCAGAGCTGAGATCTTCTGTAACGTCTCATTC | + |
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Preference number: 5 (lower is better) Translates to: FLSLSKTDGRRLARY*RANIRAEIFCNVSF Trigger: GAATGAGACGTTACAGAAGATCTCAGCTCTGATATTCGCTCGGCAGTACCTGGCTAACCTCCTCCCGTCTGTCTTTGACAAACTCAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 90 bp | CAACCACGTCGCGGATTAACATGTCAAGCACAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTTCAACTTCATTCATTAGCCATGGGA | + |
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Preference number: 5 (lower is better) Translates to: QPRRGLTCQAQFFPP*CVPWIFQLHSLAMG Trigger: TCCCATGGCTAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATCCGCGACGTGGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 90 bp | GGATTAACATGTCAAGCACAGTTCTTCCCACCATGCTGTGTTCCATaGATTTTTCAACTTCATTCATTAGCCATGGGAGGAATCCTACCT | + |
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Preference number: 5 (lower is better) Translates to: GLTCQAQFFPPCCVP*IFQLHSLAMGGILP Trigger: AGGTAGGATTCCTCCCATGGCTAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CAA 72 bp | GCTGGTCGTCGGGCGCGCTGGTGCAGTGGCCGCTTCTaGGCAGGCAGGGCCGCCCAAATGTTGGTGGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: AGRRARWCSGRF*AGRAAQMLVAA Trigger: GGCCGCCACCAACATTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CAA 72 bp | GGCGGAGCGCGAGGGGGACAGTTGCGCCCCCATCGGTaGCCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: GGARGGQLRPHR*PSNPRFRLEAG Trigger: TCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CAA 90 bp | GAGGACGCCGCTCTCGGAGAAACGGGCGGAGCGCGAGGGGGACAGTaGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCCGCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: EDAALGETGGARGGQ*RPHRLPSNPRFRLE Trigger: CTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTCCGAGAGCGGCGTCCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | GCGGAGCGCGAGGGGGACAGTTGCGCCCCCATCGGTTaGCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: AEREGDSCAPIG*RATRGSAWRQE Trigger: TTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 72 bp | CTGGTCGTCGGGCGCGCTGGTGCAGTGGCCGCTTCTTaGCAGGCAGGGCCGCCCAAATGTTGGTGGCGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LVVGRAGAVAAS*QAGPPKCWWRP Trigger: TGGCCGCCACCAACATTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CCA 72 bp | CCGCCCACCTGCTGGTCGTCGGGCGCGCTGGTGCAGTaGCCGCTTCTTGGCAGGCAGGGCCGCCCAAATGTT | + |
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Preference number: 6 (lower is better) Translates to: PPTCWSSGALVQ*PLLGRQGRPNV Trigger: AACATTTGGGCGGCCCTGCCTGCCAAGAAGCGGCCACTGCACCAGCGCGCCCGACGACCAGCAGGTGGGCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CAA 90 bp | GGAGAAACGGGCGGAGCGCGAGGGGGACAGTTGCGCCCCCATCGGTaGCCGAGCAACCCGAGGTTCCGCCTGGAGGCAGGAACTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: GETGGARGGQLRPHR*PSNPRFRLEAGTPG Trigger: GCCTGGAGTTCCTGCCTCCAGGCGGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | CTCTCGGAGAAACGGGCGGAGCGCGAGGGGGACAGTTaGGCCCCCATCGGTTGCCGAGCAACCCGAGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSEKRAEREGDS*APIGCRATRGS Trigger: GGAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTCCGAGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS CAA 72 bp | GCTCTCGGAGAAACGGGCGGAGCGCGAGGGGGACAGTaGCGCCCCCATCGGTTGCCGAGCAACCCGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ALGETGGARGGQ*RPHRLPSNPRF Trigger: GAACCTCGGGTTGCTCGGCAACCGATGGGGGCGCAACTGTCCCCCTCGCGCTCCGCCCGTTTCTCCGAGAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS TCA 72 bp | CACGGCCCGGGGCCTGCTGGAATAGGTGTAGAGGCCTaGGGCCTCGGCTGTCCGAGGGTTAGGGTCTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: HGPGPAGIGVEA*GLGCPRVRVCH Trigger: ATGACAGACCCTAACCCTCGGACAGCCGAGGCCTCAGGCCTCTACACCTATTCCAGCAGGCCCCGGGCCGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS TCA 72 bp | GCTTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGTTTaGGCTGCTCCTGGGCTCGTTTTCTGGCAAGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: AFCPPRAQAFVV*AAPGLVFWQEP Trigger: GGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAGAAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | CTGCCCTCCACGGGCTCAGGCGTTCGTGGTTTGAGCTaGTCCTGGGCTCGTTTTCTGGCAAGAGCCCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LPSTGSGVRGLS*SWARFLARALL Trigger: GAGAAGGGCTCTTGCCAGAAAACGAGCCCAGGAGCAGCTCAAACCACGAACGCCTGAGCCCGTGGAGGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS TCA 72 bp | CTGGCAAGAGCCCTTCTCCTGGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGCTGTCCAGGCACCTGT | + |
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Preference number: 6 (lower is better) Translates to: LARALLLACCCR*SSRGSGCPGTC Trigger: ACAGGTGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097423.3 |
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| CDS TCA 72 bp | CTGGCAAGAGCCCTTCTCCTGGCCTGCTGCTGTCGCTaGAGCTCTAGAGGATCAGGCTGTCCAGGCTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: LARALLLACCCR*SSRGSGCPGCP Trigger: AGGACAGCCTGGACAGCCTGATCCTCTAGAGCTTCAGCGACAGCAGCAGGCCAGGAGAAGGGCTCTTGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232223.2 |
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| CDS CAA 72 bp | CTTACGGCGCTCCTTTTCTTCTCGGTGCCTTCTCTCTaGCTCTTCCAGTCGCTGCACTTCGGCCAGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LTALLFFSVPSL*LFQSLHFGQLH Trigger: GTGGAGCTGGCCGAAGTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGAGAAGAAAAGGAGCGCCGTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | TCTTCTCGGTGCCTTCTCTCTTGCTCTTCCAGTCGCTaGACTTCGGCCAGCTCCACGTTCCTTATCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSRCLLSCSSSR*TSASSTFLISS Trigger: TGAAGAGATAAGGAACGTGGAGCTGGCCGAAGTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGAGAAGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | GCTGGCTGTGAGGAGACTCTGTCTAAAACTGGCTTCTaGGTGTGCAATGTGGTCACCGAGGGATCTGTCACT | + |
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Preference number: 6 (lower is better) Translates to: AGCEETLSKTGF*VCNVVTEGSVT Trigger: AGTGACAGATCCCTCGGTGACCACATTGCACACGCAGAAGCCAGTTTTAGACAGAGTCTCCTCACAGCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS TCA 72 bp | TTCCACAGGCTTCCTTTCTTGGGATGGTGCTGGCTGTaGGGAGACTCTAGAAGGGACTGTTCAATCGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FHRLPFLGWCWL*GDSRRDCSIVF Trigger: GAAGACGATTGAACAGTCCCTTCTAGAGTCTCCTCACAGCCAGCACCATCCCAAGAAAGGAAGCCTGTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231900.2 |
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| CDS TCA 72 bp | TCAAGGTCAAAGTCGAAAAGCTCTCCTCCCAGGATCTaGGTGGCCACATCTTTGCCAGTTTTGGCAGGAATG | + |
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Preference number: 6 (lower is better) Translates to: SRSKSKSSPPRI*VATSLPVLAGM Trigger: CATTCCTGCCAAAACTGGCAAAGATGTGGCCACTCAGATCCTGGGAGGAGAGCTTTTCGACTTTGACCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097423.3 ENSMUST00000231900.2 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | TGTAACGTCTCATTCCGCTTATGGACAATCTCCCACTaGTGTTTCTTACGGCGCTCCTTTTCTTCTCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: CNVSFRLWTISH*CFLRRSFSSRC Trigger: GCACCGAGAAGAAAAGGAGCGCCGTAAGAAACAGCAGTGGGAGATTGTCCATAAGCGGAATGAGACGTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | ATTTCTTCAAGGTATAATTCTGTTTGTATGTCCACATaGTTTCTGCCCTCCACGGGCTCAGGCGTTCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: ISSRYNSVCMST*FLPSTGSGVRG Trigger: ACCACGAACGCCTGAGCCCGTGGAGGGCAGAAAGCATGTGGACATACAAACAGAATTATACCTTGAAGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097423.3 ENSMUST00000231900.2 ENSMUST00000232223.2 |
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| CDS GCA 72 bp | CGCGGATTAACATGTCAAGCACAGTTCTTCCCACCATaGTGTGTTCCATGGATTTTTCAACTTCATTCATTA | + |
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Preference number: 6 (lower is better) Translates to: RGLTCQAQFFPP*CVPWIFQLHSL Trigger: TAATGAATGAAGTTGAAAAATCCATGGAACACAGCATGGTGGGAAGAACTGTGCTTGACATGTTAATCCGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097423.3 ENSMUST00000232223.2 |
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