Pregenerated sensors for RSPH14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009070Ensembl transcript IDs: ENSMUST00000009214.10, ENSMUST00000159994.2, ENSMUST00000160072.8, ENSMUST00000160450.8, ENSMUST00000166088.8, ENSMUST00000179546.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGGTGTGGCTTGGTTTGAGTGGGTGTGGCCTTGTTGGAGGAAGTaGGTCAGTGTGGGGGTGGGGTTTGAGGTCCTAGGCTCAAGCTCA | + |
|
Preference number: 1 (lower is better) Translates to: GGVAWFEWVWPCWRK*VSVGVGFEVLGSSS Trigger: TGAGCTTGAGCCTAGGACCTCAAACCCCACCCCCACACTGACTCACTTCCTCCAACAAGGCCACACCCACTCAAACCAAGCCACACCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR GCA 90 bp | GCAGGTGTGCATCTGAGGTGTGGTGGCTTGAATATGCTTGGCCCGTaGAAAGTGGCACCATTAGGAGGTGTGGCTTGGTTTGAGTGGGTG | + |
|
Preference number: 1 (lower is better) Translates to: AGVHLRCGGLNMLGP*KVAPLGGVAWFEWV Trigger: CACCCACTCAAACCAAGCCACACCTCCTAATGGTGCCACTTTGCACGGGCCAAGCATATTCAAGCCACCACACCTCAGATGCACACCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR TCA 90 bp | CTGGGGAAGGGCAGGCTAGGAAGCAGTTCTGATAGCCTGCAACAGTaGAGCAGGTGTGCATCTGAGGTGTGGTGGCTTGAATATGCTTGG | + |
|
Preference number: 1 (lower is better) Translates to: LGKGRLGSSSDSLQQ*SRCASEVWWLEYAW Trigger: CCAAGCATATTCAAGCCACCACACCTCAGATGCACACCTGCTTCACTGTTGCAGGCTATCAGAACTGCTTCCTAGCCTGCCCTTCCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR GCA 90 bp | CCGGCAGACTCTAGGGGAATCCCTCTTGTGTACCAGGTAAGTCTGTaGAGAAATGTCCACTACTCTTTCCCTGTGCAGCCTGGAAGTGGA | + |
|
Preference number: 1 (lower is better) Translates to: PADSRGIPLVYQVSL*RNVHYSFPVQPGSG Trigger: TCCACTTCCAGGCTGCACAGGGAAAGAGTAGTGGACATTTCTGCACAGACTTACCTGGTACACAAGAGGGATTCCCCTAGAGTCTGCCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR TCA 90 bp | GCCTGGAAGTGGAAAGAGCTAGCATGGAAACATGTGAATGGCATTTaGTTCAACGTGTATACGTCTCTCAAAGTTGTAATATTAGGGCCA | + |
|
Preference number: 1 (lower is better) Translates to: AWKWKELAWKHVNGI*FNVYTSLKVVILGP Trigger: TGGCCCTAATATTACAACTTTGAGAGACGTATACACGTTGAATCAAATGCCATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 90 bp | CTGTGCAGCCTGGAAGTGGAAAGAGCTAGCATGGAAACATGTGAATaGCATTTGATTCAACGTGTATACGTCTCTCAAAGTTGTAATATT | + |
|
Preference number: 1 (lower is better) Translates to: LCSLEVERASMETCE*HLIQRVYVSQSCNI Trigger: AATATTACAACTTTGAGAGACGTATACACGTTGAATCAAATGCCATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAGGCTGCACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTGGGTTAGCTGACAGGATGGCGCTAGCTGGGGAAGGGCAGGCTAGGAAGCAGAGCTCCATGCCTGCCTaGACGCTGCCATGTTCCTAC | + |
|
Preference number: 2 (lower is better) Translates to: IGLADRMALAGEGQARKQSSMPA*TLPCSY Trigger: GTAGGAACATGGCAGCGTCCAGGCAGGCATGGAGCT...CTGCTTCCTAGCCTGCCCTTCCCCAGCTAGCGCCATCCTGTCAGCTAACCCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR TCA 90 bp | AGAAGGGGCTTGAGGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAATGTGGGGGTGGGGTTTaGGGTCCTAGGCTCAAGCTC | + |
|
Preference number: 2 (lower is better) Translates to: RRGLRHLPRSCSQRAGSKCGGGV*GPRLKL Trigger: GAGCTTGAGCCTAGGACCTCAAACCCCACCCCCACA...TTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCCTCAAGCCCCTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | AATGTACTGGCAAAGTGGGTCCCAGCTCCCCCAGAGGCACTGGACAGAGAGGAGTGTGCAGCCTGGAAGTaGAAAGAGCTAGCATGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: NVLAKWVPAPPEALDREECAAWK*KELAWK Trigger: TTTCCATGCTAGCTCTTTCCACTTCCAGGCTGCACA...CTCCTCTCTGTCCAGTGCCTCTGGGGGAGCTGGGACCCACTTTGCCAGTACATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR GCA 90 bp | ACCTCCTTCTCCAGCTCCATGCCTGCCTGGACGCTGCCATGTTCCTACCATGATACTACTCTTTCCCTGTaGAGCCTGGAAGTGGAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: TSFSSSMPAWTLPCSYHDTTLSL*SLEVER Trigger: TCTTTCCACTTCCAGGCTGCACAGGGAAAGAGTAGT...ATCATGGTAGGAACATGGCAGCGTCCAGGCAGGCATGGAGCTGGAGAAGGAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR GCA 90 bp | TGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATCCAAGCCCTTCTCCAGCTCCATaGCTGCCTGGACGCTGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: CRVHAHREQGVNNTYNPSPSPAP*LPGRCH Trigger: ATGGCAGCGTCCAGGCAGGCATGGAGCTGGAGAAGG...GCTTGGATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | AATGTACTGGCAAAGTGGGTCCCAGCTCCCCCAGAGGCACTGGACAGAGAGGAGGAGTTGCTTTGGTCATaGTATCTCTTCACAGCAGTA | + |
|
Preference number: 2 (lower is better) Translates to: NVLAKWVPAPPEALDREEELLWS*YLFTAV Trigger: TACTGCTGTGAAGAGATACCATGACCAAAGCAACTC...CTCCTCTCTGTCCAGTGCCTCTGGGGGAGCTGGGACCCACTTTGCCAGTACATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGGGTAATGCTGATTCGTTCTCACTGGTCGTGCCCGTGGACAACACCATACAATGTGCATCTGAGGTGTaGTGGCTTGAATATGCTTGG | + |
|
Preference number: 2 (lower is better) Translates to: RGNADSFSLVVPVDNTIQCASEV*WLEYAW Trigger: CCAAGCATATTCAAGCCACCACACCTCAGATGCACA...TTGTATGGTGTTGTCCACGGGCACGACCAGTGAGAACGAATCAGCATTACCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | TGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATCCAAGCTTAGGGCCAGTGAGGTaGCTCTACAAGGTAAAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: CRVHAHREQGVNNTYNPSLGPVR*LYKVKA Trigger: TGCTTTTACCTTGTAGAGCCACCTCACTGGCCCTAA...GCTTGGATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR GCA 90 bp | TTGAGGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTAGTCCTTTACAAGAGTTaGTTTGGTCATGGTATCTCT | + |
|
Preference number: 2 (lower is better) Translates to: LRHLPRSCSQRAGSKQYVVLYKS*FGHGIS Trigger: AGAGATACCATGACCAAAGCAACTCTTGTAAAGGAC...TACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCCTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CAA 90 bp | AGCCTGGAAGTGGAAAGAGCTAGCATGGAAACATGTGAATGGCATTaGATTCAACGTGTATACGTCTCTCAAAGTTGTAATATTAGGGCC | + |
|
Preference number: 2 (lower is better) Translates to: SLEVERASMETCEWH*IQRVYVSQSCNIRA Trigger: GGCCCTAATATTACAACTTTGAGAGACGTATACACGTTGAATCAAATGCCATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CCA 90 bp | GGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATATGGAAACATGTGAATaGCATTTGATTCAACGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: GICRVHAHREQGVNNTYNMETCE*HLIQRV Trigger: TACACGTTGAATCAAATGCCATTCACATGTTTCCAT...ATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR TCA 72 bp | GTGCAAAGTGGCACCATTAGGAGGTGTGGCTTGGTTTaGGTGGGTGTGGCCTTGTTGGAGGAAGTGAGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: VQSGTIRRCGLV*VGVALLEEVSQ Trigger: CTGACTCACTTCCTCCAACAAGGCCACACCCACTCAAACCAAGCCACACCTCCTAATGGTGCCACTTTGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | GGGGTAATGCTGATTCGTTCTCACTGGTCGTGCCCGTaGACAACACCATACAACAGTGAGCTTCCAGAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: GVMLIRSHWSCP*TTPYNSELPEH Trigger: ATGCTCTGGAAGCTCACTGTTGTATGGTGTTGTCCACGGGCACGACCAGTGAGAACGAATCAGCATTACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | TCATCAAGTTGGCAGTTGAGTAGAAAAGGAATGTACTaGCAAAGTGGGTCCCAGCTCCCCCAGAGGCACTGG | + |
|
Preference number: 3 (lower is better) Translates to: SSSWQLSRKGMY*QSGSQLPQRHW Trigger: CCAGTGCCTCTGGGGGAGCTGGGACCCACTTTGCCAGTACATTCCTTTTCTACTCAACTGCCAACTTGATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCTCCTTCTCCAGCTCCATGCCTGCCTGGACGCTGCCATGTTCCTACCATGATTGTCCTTTACAAGAGTaGCTTTGGTCATGGTATCTC | + |
|
Preference number: 3 (lower is better) Translates to: TSFSSSMPAWTLPCSYHDCPLQE*LWSWYL Trigger: GAGATACCATGACCAAAGCAACTCTTGTAAAGGACA...ATCATGGTAGGAACATGGCAGCGTCCAGGCAGGCATGGAGCTGGAGAAGGAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR-3UTR CAA 90 bp | TTGAGGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTAGAGGTGTGGCTTGGTTaGAGTGGGTGTGGCCTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: LRHLPRSCSQRAGSKQYVEVWLG*SGCGLV Trigger: AACAAGGCCACACCCACTCAAACCAAGCCACACCTC...TACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | GTGCAGAAATGTCCACTACTCTTTCCCTGTGCAGCCTaGAAGTGGAAAGAGCTAGCATGGAAACATGTGAAT | + |
|
Preference number: 3 (lower is better) Translates to: VQKCPLLFPCAA*KWKELAWKHVN Trigger: ATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAGGCTGCACAGGGAAAGAGTAGTGGACATTTCTGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR TCA 72 bp | AATCCAGGTGATTCTAGAGCTCATCAAGTTGGCAGTTaGGTAGAAAAGGAATGTACTGGCAAAGTGGGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: NPGDSRAHQVGS*VEKECTGKVGP Trigger: GGGACCCACTTTGCCAGTACATTCCTTTTCTACTCAACTGCCAACTTGATGAGCTCTAGAATCACCTGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | ACGTCTCTCAAAGTTGTAATATTAGGGCCAGTGAGGTaGCTCTACAAGGTAAAAGCACTTGCCACACAATCC | + |
|
Preference number: 3 (lower is better) Translates to: TSLKVVILGPVR*LYKVKALATQS Trigger: GGATTGTGTGGCAAGTGCTTTTACCTTGTAGAGCCACCTCACTGGCCCTAATATTACAACTTTGAGAGACGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | AAATGTCCACTACTCTTTCCCTGTGCAGCCTGGAAGTaGAAAGAGCTAGCATGGAAACATGTGAATGGCATT | + |
|
Preference number: 3 (lower is better) Translates to: KCPLLFPCAAWK*KELAWKHVNGI Trigger: AATGCCATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAGGCTGCACAGGGAAAGAGTAGTGGACATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR TCA 72 bp | CCATGTTCCTACCATGATGAAAATGGACTAAACCTGTaGACCTGTAAGCCAGCCCTAATTAAATGTTGTCCT | + |
|
Preference number: 3 (lower is better) Translates to: PCSYHDENGLNL*TCKPALIKCCP Trigger: AGGACAACATTTAATTAGGGCTGGCTTACAGGTTCACAGGTTTAGTCCATTTTCATCATGGTAGGAACATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CCA 72 bp | CTGGAAGTGGAAAGAGCTAGCATGGAAACATGTGAATaGCATTTGATTCAACGTGTATACGTCTCTCAAAGT | + |
|
Preference number: 3 (lower is better) Translates to: LEVERASMETCE*HLIQRVYVSQS Trigger: ACTTTGAGAGACGTATACACGTTGAATCAAATGCCATTCACATGTTTCCATGCTAGCTCTTTCCACTTCCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR CCA 90 bp | AATGTACTGGCAAAGTGGGTCCCAGCTCCCCCAGAGGCACTGGACAGAGAGGAGCAGGAGGCATATACATaGAGATGCGGGCATGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: NVLAKWVPAPPEALDREEQEAYT*RCGHEP Trigger: TGGCTCATGCCCGCATCTCCATGTATATGCCTCCTG...CTCCTCTCTGTCCAGTGCCTCTGGGGGAGCTGGGACCCACTTTGCCAGTACATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR TCA 90 bp | AGAAGGGGCTTGAGGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACCAGGCAGCCTATGTTaGTGGCCTCGTAGACATACT | + |
|
Preference number: 4 (lower is better) Translates to: RRGLRHLPRSCSQRAGSKPGSLC*WPRRHT Trigger: AGTATGTCTACGAGGCCATCAACATAGGCTGCCTGG...TTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCCTCAAGCCCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR TCA 90 bp | TCCCCCAGAGGCACTGGACAGAGAGGAGCCAGGGGTAATGCTGATTCGTTCTCAGTGACAGGGCTTGGATaGTGTCATGCTTTAAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SPRGTGQRGARGNADSFSVTGLG*CHALRS Trigger: GCTTCTTAAAGCATGACATCATCCAAGCCCTGTCAC...TGAGAACGAATCAGCATTACCCCTGGCTCCTCTCTGTCCAGTGCCTCTGGGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR TCA 90 bp | TGTAATATTAGGGCCAGTGAGGTGGCTCTACAAGGTAAAAGCACTTGCCACACACGGCAGAGGGTCTGGTaGTCACTCAGCAGGAGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: CNIRASEVALQGKSTCHTRQRVW*SLSRSD Trigger: GTCACTCCTGCTGAGTGATCACCAGACCCTCTGCCG...TGTGTGGCAAGTGCTTTTACCTTGTAGAGCCACCTCACTGGCCCTAATATTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR CCA 90 bp | ACCTCCTTCTCCAGCTCCATGCCTGCCTGGACGCTGCCATGTTCCTACCATGATAGGAGTGACAGGGCTTaGATGATGTCATGCTTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: TSFSSSMPAWTLPCSYHDRSDRA*MMSCFK Trigger: CTTAAAGCATGACATCATCCAAGCCCTGTCACTCCT...ATCATGGTAGGAACATGGCAGCGTCCAGGCAGGCATGGAGCTGGAGAAGGAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR TCA 90 bp | TGTAATATTAGGGCCAGTGAGGTGGCTCTACAAGGTAAAAGCACTTGCCACACAACTCAGGATCGTGCATaGGGTCACACAGAGCCACTA | + |
|
Preference number: 4 (lower is better) Translates to: CNIRASEVALQGKSTCHTTQDRA*GHTEPL Trigger: TAGTGGCTCTGTGTGACCTCATGCACGATCCTGAGT...TGTGTGGCAAGTGCTTTTACCTTGTAGAGCCACCTCACTGGCCCTAATATTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR GCA 90 bp | GGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATACATACTCAGGATCGTaGATGAGGTCACACAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GICRVHAHREQGVNNTYNTYSGS*MRSHRA Trigger: GGCTCTGTGTGACCTCATGCACGATCCTGAGTATGT...ATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS-3UTR GCA 90 bp | GGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATGCTTGGATGATGTCATaGTTTAAGAAGCCAACTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GICRVHAHREQGVNNTYNAWMMS*FKKPTL Trigger: CAGAGTTGGCTTCTTAAAGCATGACATCATCCAAGC...ATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| 3UTR CAA 72 bp | GTGGAAAGAGCTAGCATGGAAACATGTGAATGGCATTaGATTCAACGTGTATACGTCTCTCAAAGTTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: VERASMETCEWH*IQRVYVSQSCN Trigger: ATTACAACTTTGAGAGACGTATACACGTTGAATCAAATGCCATTCACATGTTTCCATGCTAGCTCTTTCCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS CCA 90 bp | TTCCTTCAGTGGTCACTGTGGCGTGCATCAGAGCCCCGGCGGCATTaGCCTTCACCTCCTCATCCGTGTCTGACAACAGAGTCACCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: FLQWSLWRASEPRRH*PSPPHPCLTTESPG Trigger: TCCTGGTGACTCTGTTGTCAGACACGGATGAGGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCACTGAAGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 90 bp | CCTCGGTGGCGTCCTCCTGAAGGCACAGCGCCAGAGTGTCCAAGATaGTCTCCTGAATATGGTCCTCCTCCTTCTGCAGCTTCCGTACCA | + |
|
Preference number: 5 (lower is better) Translates to: PRWRPPEGTAPECPR*SPEYGPPPSAASVP Trigger: TGGTACGGAAGCTGCAGAAGGAGGAGGACCATATTCAGGAGATCATCTTGGACACTCTGGCGCTGTGCCTTCAGGAGGACGCCACCGAGG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000009214.10 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS GCA 90 bp | TTGGCATCCAGAGCTGCATATTTTCCTTCAGTGGTCACTGTGGCGTaGATCAGAGCCCCGGCGGCATTGGCCTTCACCTCCTCATCCGTG | + |
|
Preference number: 5 (lower is better) Translates to: LASRAAYFPSVVTVA*IRAPAALAFTSSSV Trigger: CACGGATGAGGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCACTGAAGGAAAATATGCAGCTCTGGATGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 90 bp | CATCAGAGCCCCGGCGGCATTGGCCTTCACCTCCTCATCCGTGTCTaGCAACAGAGTCACCAGGATGGGAATGACTTTATTCTTCCACAC | + |
|
Preference number: 5 (lower is better) Translates to: HQSPGGIGLHLLIRV*QQSHQDGNDFILPH Trigger: GTGTGGAAGAATAAAGTCATTCCCATCCTGGTGACTCTGTTGTCAGACACGGATGAGGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 90 bp | GACAACAGAGTCACCAGGATGGGAATGACTTTATTCTTCCACACCTaGTTCTTGCCATCCAACGGGATGCTGATGGCAATGAGCGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: DNRVTRMGMTLFFHT*FLPSNGMLMAMSAR Trigger: CCGGGCGCTCATTGCCATCAGCATCCCGTTGGATGGCAAGAATCAGGTGTGGAAGAATAAAGTCATTCCCATCCTGGTGACTCTGTTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS GCA 90 bp | TATAGAACCTCCGTGGTCTTTATCCGTACCAGGTTATCATCATCCTaGAGCAGGGTCTTCAGGCTCTCCAGGCAGCCTATGTTGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: YRTSVVFIRTRLSSS*SRVFRLSRQPMLMA Trigger: GGCCATCAACATAGGCTGCCTGGAGAGCCTGAAGACCCTGCTGCAGGATGATGATAACCTGGTACGGATAAAGACCACGGAGGTTCTATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000009214.10 ENSMUST00000159994.2 ENSMUST00000160072.8 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS GCA 90 bp | TTTCACACCTGCCAAAGGGCTTTGAAAATGAACCTCTGTAGAAACTaGTCAGTGCGTGAAGTCTCCTGGTGTCTGCCAGCCAGAGCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: FHTCQRALKMNLCRN*SVREVSWCLPARAL Trigger: AAGCGCTCTGGCTGGCAGACACCAGGAGACTTCACGCACTGAGCAGTTTCTACAGAGGTTCATTTTCAAAGCCCTTTGGCAGGTGTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166088.8 |
||
| CDS-3UTR CAA 90 bp | GGCATTTGCCGCGTTCATGCTCACAGAGAGCAGGGAGTAAACAATACGTATAATCTAGGGCTTTCTGCCTaGTCAGGAGATCCCTTGACT | + |
|
Preference number: 5 (lower is better) Translates to: GICRVHAHREQGVNNTYNLGLSA*SGDPLT Trigger: AGTCAAGGGATCTCCTGACAAGGCAGAAAGCCCTAG...ATTATACGTATTGTTTACTCCCTGCTCTCTGTGAGCATGAACGCGGCAAATGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159994.2 |
||
| CDS TCA 90 bp | TGTCATGCTTTAAGAAGCCAACTCTGCCTACGTAATGGGTGGCCATaGTGTATAGAACCTCCGTGGTCTTTATCCGTACCAGGTTATCAT | + |
|
Preference number: 5 (lower is better) Translates to: CHALRSQLCLRNGWP*CIEPPWSLSVPGYH Trigger: ATGATAACCTGGTACGGATAAAGACCACGGAGGTTCTATACATCATGGCCACCCATTACGTAGGCAGAGTTGGCTTCTTAAAGCATGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000009214.10 ENSMUST00000159994.2 ENSMUST00000160072.8 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CCA 72 bp | TTAAACAGGGCACGGCTTGGCTCTCTAGGGCCTCGGTaGCGTCCTCCTGAAGGCACAGCGCCAGAGTGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LNRARLGSLGPR*RPPEGTAPECP Trigger: TGGACACTCTGGCGCTGTGCCTTCAGGAGGACGCCACCGAGGCCCTAGAGAGCCAAGCCGTGCCCTGTTTAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000009214.10 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CAA 72 bp | GTGGTCACTGTGGCGTGCATCAGAGCCCCGGCGGCATaGGCCTTCACCTCCTCATCCGTGTCTGACAACAGA | + |
|
Preference number: 6 (lower is better) Translates to: VVTVACIRAPAA*AFTSSSVSDNR Trigger: TCTGTTGTCAGACACGGATGAGGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CAA 90 bp | TTTCCTTCAGTGGTCACTGTGGCGTGCATCAGAGCCCCGGCGGCATaGGCCTTCACCTCCTCATCCGTGTCTGACAACAGAGTCACCAGG | + |
|
Preference number: 6 (lower is better) Translates to: FPSVVTVACIRAPAA*AFTSSSVSDNRVTR Trigger: CCTGGTGACTCTGTTGTCAGACACGGATGAGGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCACTGAAGGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS GCA 72 bp | AGAGCTGCATATTTTCCTTCAGTGGTCACTGTGGCGTaGATCAGAGCCCCGGCGGCATTGGCCTTCACCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RAAYFPSVVTVA*IRAPAALAFTS Trigger: GGAGGTGAAGGCCAATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCACTGAAGGAAAATATGCAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CAA 72 bp | AACGGGATGCTGATGGCAATGAGCGCCCGGGCGGCTTaGCTGCGGATTTCAGAGTTTTGGCTAAGGAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: NGMLMAMSARAA*LRISEFWLRSF Trigger: GAAGCTCCTTAGCCAAAACTCTGAAATCCGCAGCAAAGCCGCCCGGGCGCTCATTGCCATCAGCATCCCGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000009214.10 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 72 bp | TATGCCTGGTGTAGATTCTCCCGGCAGAGGGTCTGGTaGTCACTCAGCAGGAGTGACAGGGCTTGGATGATG | + |
|
Preference number: 6 (lower is better) Translates to: YAWCRFSRQRVW*SLSRSDRAWMM Trigger: CATCATCCAAGCCCTGTCACTCCTGCTGAGTGATCACCAGACCCTCTGCCGGGAGAATCTACACCAGGCATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000009214.10 ENSMUST00000159994.2 ENSMUST00000160072.8 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 72 bp | CCCGGCGGCATTGGCCTTCACCTCCTCATCCGTGTCTaGCAACAGAGTCACCAGGATGGGAATGACTTTATT | + |
|
Preference number: 6 (lower is better) Translates to: PGGIGLHLLIRV*QQSHQDGNDFI Trigger: AATAAAGTCATTCCCATCCTGGTGACTCTGTTGTCAGACACGGATGAGGAGGTGAAGGCCAATGCCGCCGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS GCA 72 bp | TCCGTGGTCTTTATCCGTACCAGGTTATCATCATCCTaGAGCAGGGTCTTCAGGCTCTCCAGGCAGCCTATG | + |
|
Preference number: 6 (lower is better) Translates to: SVVFIRTRLSSS*SRVFRLSRQPM Trigger: CATAGGCTGCCTGGAGAGCCTGAAGACCCTGCTGCAGGATGATGATAACCTGGTACGGATAAAGACCACGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000009214.10 ENSMUST00000159994.2 ENSMUST00000160072.8 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CAA 72 bp | GCTTTTGTGGCATTCAGACACAGCTTGGTCTTGGGGTaGGTGGAAAGCAACTCCAGGAGTGGTTCGATAGCA | + |
|
Preference number: 6 (lower is better) Translates to: AFVAFRHSLVLG*VESNSRSGSIA Trigger: TGCTATCGAACCACTCCTGGAGTTGCTTTCCACCAACCCCAAGACCAAGCTGTGTCTGAATGCCACAAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS TCA 72 bp | TCGATGTCAGGAGGCATATACATGGAGATGCGGGCATaGGCCATCTTTTCACACCTGCCAAAGGGCTTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SMSGGIYMEMRA*AIFSHLPKGFE Trigger: TTCAAAGCCCTTTGGCAGGTGTGAAAAGATGGCTCATGCCCGCATCTCCATGTATATGCCTCCTGACATCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166088.8 |
||
| CDS TCA 72 bp | GTCACCAGGATGGGAATGACTTTATTCTTCCACACCTaGTTCTTGCCATCCAACGGGATGCTGATGGCAATG | + |
|
Preference number: 6 (lower is better) Translates to: VTRMGMTLFFHT*FLPSNGMLMAM Trigger: CATTGCCATCAGCATCCCGTTGGATGGCAAGAATCAGGTGTGGAAGAATAAAGTCATTCCCATCCTGGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000009214.10 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||
| CDS CAA 72 bp | GGGCATGAGCCATCTTTTCACACCTGCCAAAGGGCTTaGAAAATGAACCTCTGTAGAAACTGCTCAGTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: GHEPSFHTCQRA*KMNLCRNCSVR Trigger: ACGCACTGAGCAGTTTCTACAGAGGTTCATTTTCAAAGCCCTTTGGCAGGTGTGAAAAGATGGCTCATGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166088.8 |
||
| CDS TCA 72 bp | TTAAGAAGCCAACTCTGCCTACGTAATGGGTGGCCATaGTGTATAGAACCTCCGTGGTCTTTATCCGTACCA | + |
|
Preference number: 6 (lower is better) Translates to: LRSQLCLRNGWP*CIEPPWSLSVP Trigger: TGGTACGGATAAAGACCACGGAGGTTCTATACATCATGGCCACCCATTACGTAGGCAGAGTTGGCTTCTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000009214.10 ENSMUST00000159994.2 ENSMUST00000160072.8 ENSMUST00000160450.8 ENSMUST00000166088.8 ENSMUST00000179546.8 |
||