Pregenerated sensors for RSPH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024033Ensembl transcript IDs: ENSMUST00000024832.9, ENSMUST00000235144.2, ENSMUST00000236379.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCGCCTGGTGTGTCTGTaGTCTTCTGCCTCCACTATC | + |
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Preference number: 2 (lower is better) Translates to: KNNLTAKRERLTGGGYQPRLVCL*SSASTI Trigger: GATAGTGGAGGCAGAAGACCACAGACACACCAGGCG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGGTTCCTCCTGGCCTTaGCCCTCAGGGGGAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPGSSWP*PSGGGC Trigger: GCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCCCTGCGGTTCCTCCTaGCCTTGGCCCTCAGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPPCGSS*PWPSGG Trigger: TCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCAGGG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCCCTCCTGCTGTCCGTaGACCCAGGTACCGACATAC | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPPSCCP*TQVPTY Trigger: GTATGTCGGTACCTGGGTGCACGGACAGCAGGAGGG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCACGCCAGTAAGTCCCTaGGGTTCCTCCTGGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPTPVSP*GSSWPW Trigger: CCAAGGCCAGGAGGAACCGCAGGGACTTACTGGCGT...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGTTCTCCCACCTCATTaGGCTCCCCTTCGTACTCCC | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPVLPPH*APLRTP Trigger: GGGAGTACGAAGGGGAGCGCAATGAGGTGGGAGAAC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024832.9 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCTCCTCGGAGAGGGTTaGAGTCCACAGGGCCAATTC | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPLLGEG*SPQGQF Trigger: GAATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR TCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCCTGGCTCTCCTGCCTaGACGTGTCTACGTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPPGSPA*TCLRLH Trigger: ATGAAGACGTAGACACGTTCAGGCAGGAGAGCCAGG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGTTCTCCCACCTCATTaGGCTCCCCTTCGTACTCCA | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPVLPPH*APLRTP Trigger: TGGAGTACGAAGGGGAGCGCAATGAGGTGGGAGAAC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236379.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCTTGCCCTGGTACCTGTaGTTTAGGTGGATGAGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPLPWYL*FRWMSS Trigger: CGAGCTCATCCACCTAAACCACAGGTACCAGGGCAA...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCTTCATGAACTTGCCCTaGTACCTGTGGTTTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPFMNLP*YLWFRW Trigger: CCACCTAAACCACAGGTACCAGGGCAAGTTCATGAA...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR TCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCAGGATTTTTGTTCATaGACTTGCCCTGGTACCTGT | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPQDFCS*TCPGTC Trigger: ACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR TCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCGTGCTTTTTATTTTTaGCATAGTCTCCGGTGTACC | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPRAFYF*HSLRCT Trigger: GGTACACCGGAGACTATGTCAAAAATAAAAAGCACG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR TCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCTGTAGGTGTCATTGTTaGCATAGTAGTACACGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPCRCHC*HSSTRL Trigger: AAGGCGTGTACTACTATGTCAACAATGACACCTACA...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR TCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCTTAATCCTGGAGGTCTaGCGGTTCTTCATCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPLILEV*RFFIKV Trigger: AACTTTGATGAAGAACCGTCAGACCTCCAGGATTAA...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCATATCTGGATCCATCTaGATAGATAAAGGTGCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: KNNLTAKRERLTGGGYQPISGSI*IDKGAL Trigger: CAAGGCACCTTTATCTATCCAGATGGATCCAGATAT...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 90 bp | GAGGGGTCACCCACGCCAGTAAGTCCCTGCGGTTCCTCCTGGCCTTaGCCCTCAGGGGGAGGCTGCTCCTCGGAGAGGGTTGGAGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: EGSPTPVSPCGSSWP*PSGGGCSSERVGVH Trigger: GTGGACTCCAACCCTCTCCGAGGAGCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCAGGGACTTACTGGCGTGGGTGACCCCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | TCTGCCTGGATGTCTTCTGAGGGGTCACCCACGCCAGTAAGTCCCTaGGGTTCCTCCTGGCCTTGGCCCTCAGGGGGAGGCTGCTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: SAWMSSEGSPTPVSP*GSSWPWPSGGGCSS Trigger: CGAGGAGCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCAGGGACTTACTGGCGTGGGTGACCCCTCAGAAGACATCCAGGCAGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS TCA 90 bp | CCTCGGCTCCAGCTCGCCCTCAAAACCTTCTGCCTGGATGTCTTCTaGGGGGTCACCCACGCCAGTAAGTCCCTGCGGTTCCTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PRLQLALKTFCLDVF*GVTHASKSLRFLLA Trigger: GGCCAGGAGGAACCGCAGGGACTTACTGGCGTGGGTGACCCCTCAGAAGACATCCAGGCAGAAGGTTTTGAGGGCGAGCTGGAGCCGAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | GTAAGTCCCTGCGGTTCCTCCTGGCCTTGGCCCTCAGGGGGAGGCTaGTCCTCGGAGAGGGTTGGAGTCCACAGGGCCAATTCTGTGATG | + |
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Preference number: 5 (lower is better) Translates to: VSPCGSSWPWPSGGG*SSERVGVHRANSVM Trigger: CATCACAGAATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAGCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCAGGGACTTAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | CAGCACCCTCCTGCTGTCCGTGCACCCAGGTACCGACATACTTACTaGCGGTCTCTGCGTAGAGGTAGGTGCCTTGCCCGTGCCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: QHPPAVRAPRYRHTY*RSLRRGRCLARAFD Trigger: ATCAAAGGCACGGGCAAGGCACCTACCTCTACGCAGAGACCGGCAGTAAGTATGTCGGTACCTGGGTGCACGGACAGCAGGAGGGTGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | CCCTGGTACCTGTGGTTTAGGTGGATGAGCTCGGCAGCACCCTCCTaGTGTCCGTGCACCCAGGTACCGACATACTTACTGCCGGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PWYLWFRWMSSAAPS*CPCTQVPTYLLPVS Trigger: AGAGACCGGCAGTAAGTATGTCGGTACCTGGGTGCACGGACAGCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 90 bp | CCAGGGCCCACAGGATTTTTGTTCATGAACTTGCCCTGGTACCTGTaGTTTAGGTGGATGAGCTCGGCAGCACCCTCCTGCTGTCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: PGPTGFLFMNLPWYL*FRWMSSAAPSCCPC Trigger: GCACGGACAGCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTGTGGGCCCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | CTGCTGTCCGTGCACCCAGGTACCGACATACTTACTGCCGGTCTCTaGGTAGAGGTAGGTGCCTTGCCCGTGCCTTTGATGATTGAACCA | + |
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Preference number: 5 (lower is better) Translates to: LLSVHPGTDILTAGL*VEVGALPVPLMIEP Trigger: TGGTTCAATCATCAAAGGCACGGGCAAGGCACCTACCTCTACGCAGAGACCGGCAGTAAGTATGTCGGTACCTGGGTGCACGGACAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | TCCAAACTCATAGCTTCCTTCATATGTGTCCCCGTTGGGCAGTCGTaGTTTCCCATGTCCGTGTCGTTCTCCCACCTCATTGCGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: SKLIASFICVPVGQS*FPMSVSFSHLIALP Trigger: GGGGAGCGCAATGAGGTGGGAGAACGACACGGACATGGGAAAGCACGACTGCCCAACGGGGACACATATGAAGGAAGCTATGAGTTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024832.9 ENSMUST00000236379.2 |
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| CDS CCA 90 bp | ACGTACTTTCCAGGGCCCACAGGATTTTTGTTCATGAACTTGCCCTaGTACCTGTGGTTTAGGTGGATGAGCTCGGCAGCACCCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TYFPGPTGFLFMNLP*YLWFRWMSSAAPSC Trigger: GCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTGTGGGCCCTGGAAAGTACGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCCGTTCTCCCACCTCATaGCGCTCCCCTTCGTACTCC | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPRSPTS*RSPSYS Trigger: GGAGTACGAAGGGGAGCGCAATGAGGTGGGAGAACG...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024832.9 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGCTCCTCGGAGAGGGTaGGAGTCCACAGGGCCAATT | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPAPRRG*ESTGPI Trigger: AATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAGC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 90 bp | CATGTCTTTTTCCAAACTCATAGCTTCCTTCATATGTGTCCCCGTTaGGCAGTCGTGCTTTCCCATGTCCGTGTCGTTCTCCCACCTCAT | + |
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Preference number: 5 (lower is better) Translates to: HVFFQTHSFLHMCPR*AVVLSHVRVVLPPH Trigger: ATGAGGTGGGAGAACGACACGGACATGGGAAAGCACGACTGCCCAACGGGGACACATATGAAGGAAGCTATGAGTTTGGAAAAAGACATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024832.9 ENSMUST00000236379.2 |
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| CDS GCA 90 bp | TCCTCCTCTTCTCCTCTTTCCGTATCTGTGAGGCGATATTCACCGTaGTGTTCGCATCCAATATCAAATACGTACTTTCCAGGGCCCACA | + |
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Preference number: 5 (lower is better) Translates to: SSSSPLSVSVRRYSP*CSHPISNTYFPGPT Trigger: TGTGGGCCCTGGAAAGTACGTATTTGATATTGGATGCGAACAGCACGGTGAATATCGCCTCACAGATACGGAAAGAGGAGAAGAGGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGGGCCCACAGGATTTTaGTTCATGAACTTGCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPGPTGF*FMNLPW Trigger: CCAGGGCAAGTTCATGAACAAAAATCCTGTGGGCCC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS TCA 90 bp | CTAATGTCTCTTCCTCCTCCTCCTCTTCTCCTCTTTCCGTATCTGTaGGGCGATATTCACCGTGCTGTTCGCATCCAATATCAAATACGT | + |
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Preference number: 5 (lower is better) Translates to: LMSLPPPPLLLFPYL*GDIHRAVRIQYQIR Trigger: ACGTATTTGATATTGGATGCGAACAGCACGGTGAATATCGCCTCACAGATACGGAAAGAGGAGAAGAGGAGGAGGAGGAAGAGACATTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCTTTTTGTTCATGAACTaGCCCTGGTACCTGTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPFLFMN*PWYLWF Trigger: AAACCACAGGTACCAGGGCAAGTTCATGAACAAAAA...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCGCCAATTCTGTGATGTaGAGAGCTTTCCATTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPANSVM*RAFHFG Trigger: TCCAAAATGGAAAGCTCTCAACATCACAGAATTGGC...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS-3UTR CAA 90 bp | AAAAACAACTTAACAGCTAAGAGAGAGAGATTGACAGGTGGTGGATACCAGCCCATAGATAAAGGTGCCTaGGCCGTGCTTTTTATTTTT | + |
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Preference number: 5 (lower is better) Translates to: KNNLTAKRERLTGGGYQPIDKGA*AVLFIF Trigger: AAAAATAAAAAGCACGGCCAAGGCACCTTTATCTAT...GGGCTGGTATCCACCACCTGTCAATCTCTCTCTCTTAGCTGTTAAGTTGTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CAA 72 bp | ACCCACGCCAGTAAGTCCCTGCGGTTCCTCCTGGCCTaGGCCCTCAGGGGGAGGCTGCTCCTCGGAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: THASKSLRFLLA*ALRGRLLLGEG Trigger: ACCCTCTCCGAGGAGCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCAGGGACTTACTGGCGTGGGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 72 bp | TGCGGTTCCTCCTGGCCTTGGCCCTCAGGGGGAGGCTaGTCCTCGGAGAGGGTTGGAGTCCACAGGGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: CGSSWPWPSGGG*SSERVGVHRAN Trigger: ATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAGCAGCCTCCCCCTGAGGGCCAAGGCCAGGAGGAACCGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 72 bp | AGGTGGATGAGCTCGGCAGCACCCTCCTGCTGTCCGTaGACCCAGGTACCGACATACTTACTGCCGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: RWMSSAAPSCCP*TQVPTYLLPVS Trigger: AGAGACCGGCAGTAAGTATGTCGGTACCTGGGTGCACGGACAGCAGGAGGGTGCTGCCGAGCTCATCCACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS TCA 72 bp | CAGCTCGCCCTCAAAACCTTCTGCCTGGATGTCTTCTaGGGGGTCACCCACGCCAGTAAGTCCCTGCGGTTC | + |
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Preference number: 6 (lower is better) Translates to: QLALKTFCLDVF*GVTHASKSLRF Trigger: GAACCGCAGGGACTTACTGGCGTGGGTGACCCCTCAGAAGACATCCAGGCAGAAGGTTTTGAGGGCGAGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 72 bp | CTGTGGTTTAGGTGGATGAGCTCGGCAGCACCCTCCTaGTGTCCGTGCACCCAGGTACCGACATACTTACTG | + |
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Preference number: 6 (lower is better) Translates to: LWFRWMSSAAPS*CPCTQVPTYLL Trigger: CAGTAAGTATGTCGGTACCTGGGTGCACGGACAGCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 72 bp | CCAGGGCCCACAGGATTTTTGTTCATGAACTTGCCCTaGTACCTGTGGTTTAGGTGGATGAGCTCGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PGPTGFLFMNLP*YLWFRWMSSAA Trigger: TGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTGTGGGCCCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CAA 72 bp | ATACTTACTGCCGGTCTCTGCGTAGAGGTAGGTGCCTaGCCCGTGCCTTTGATGATTGAACCACTCCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: ILTAGLCVEVGA*PVPLMIEPLPC Trigger: ACAGGGGAGTGGTTCAATCATCAAAGGCACGGGCAAGGCACCTACCTCTACGCAGAGACCGGCAGTAAGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 72 bp | ATAGCTTCCTTCATATGTGTCCCCGTTGGGCAGTCGTaGTTTCCCATGTCCGTGTCGTTCTCCCACCTCATT | + |
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Preference number: 6 (lower is better) Translates to: IASFICVPVGQS*FPMSVSFSHLI Trigger: AATGAGGTGGGAGAACGACACGGACATGGGAAAGCACGACTGCCCAACGGGGACACATATGAAGGAAGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024832.9 ENSMUST00000236379.2 |
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| CDS CCA 72 bp | ACAGGATTTTTGTTCATGAACTTGCCCTGGTACCTGTaGTTTAGGTGGATGAGCTCGGCAGCACCCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: TGFLFMNLPWYL*FRWMSSAAPSC Trigger: GCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 72 bp | TTCCAAACTCATAGCTTCCTTCATATGTGTCCCCGTTaGGCAGTCGTGCTTTCCCATGTCCGTGTCGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: FQTHSFLHMCPR*AVVLSHVRVVL Trigger: GAGAACGACACGGACATGGGAAAGCACGACTGCCCAACGGGGACACATATGAAGGAAGCTATGAGTTTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024832.9 ENSMUST00000236379.2 |
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| CDS CAA 72 bp | TACTTTCCAGGGCCCACAGGATTTTTGTTCATGAACTaGCCCTGGTACCTGTGGTTTAGGTGGATGAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: YFPGPTGFLFMN*PWYLWFRWMSS Trigger: CGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCATGAACAAAAATCCTGTGGGCCCTGGAAAGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CAA 90 bp | TGCTCCTCGGAGAGGGTTGGAGTCCACAGGGCCAATTCTGTGATGTaGAGAGCTTTCCATTTTGGAACGATGTTCACTAATGTCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: CSSERVGVHRANSVM*RAFHFGTMFTNVSS Trigger: GGAAGAGACATTAGTGAACATCGTTCCAAAATGGAAAGCTCTCAACATCACAGAATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CCA 72 bp | GTCATCAGCCCACTCCCCTTCATATCTGGATCCATCTaGATAGATAAAGGTGCCTTGGCCGTGCTTTTTATT | + |
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Preference number: 6 (lower is better) Translates to: VISPLPFISGSI*IDKGALAVLFI Trigger: AATAAAAAGCACGGCCAAGGCACCTTTATCTATCCAGATGGATCCAGATATGAAGGGGAGTGGGCTGATGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CAA 72 bp | GAGAGGGTTGGAGTCCACAGGGCCAATTCTGTGATGTaGAGAGCTTTCCATTTTGGAACGATGTTCACTAAT | + |
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Preference number: 6 (lower is better) Translates to: ERVGVHRANSVM*RAFHFGTMFTN Trigger: ATTAGTGAACATCGTTCCAAAATGGAAAGCTCTCAACATCACAGAATTGGCCCTGTGGACTCCAACCCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS GCA 72 bp | TCTCCTCTTTCCGTATCTGTGAGGCGATATTCACCGTaGTGTTCGCATCCAATATCAAATACGTACTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SPLSVSVRRYSP*CSHPISNTYFP Trigger: TGGAAAGTACGTATTTGATATTGGATGCGAACAGCACGGTGAATATCGCCTCACAGATACGGAAAGAGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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| CDS CAA 72 bp | TTCATATCTGGATCCATCTGGATAGATAAAGGTGCCTaGGCCGTGCTTTTTATTTTTGACATAGTCTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: FISGSIWIDKGA*AVLFIFDIVSG Trigger: ACCGGAGACTATGTCAAAAATAAAAAGCACGGCCAAGGCACCTTTATCTATCCAGATGGATCCAGATATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000024832.9 ENSMUST00000235144.2 ENSMUST00000236379.2 |
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