Pregenerated sensors for RSLCAN18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074824Ensembl transcript IDs: ENSMUST00000091526.4
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGGATGCTTGAGGTGTGAAGAACGGGTAAAGGTCTTGTCACGCTaGTTGTTTCTGAAGGCTCCTTCATCAGAATGGATTCCCCGATGC | + |
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Preference number: 1 (lower is better) Translates to: LGCLRCEERVKVLSR*LFLKAPSSEWIPRC Trigger: GCATCGGGGAATCCATTCTGATGAAGGAGCCTTCAGAAACAATCAGCGTGACAAGACCTTTACCCGTTCTTCACACCTCAAGCATCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 90 bp | GAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTTaGCAGTCAAATGACCTTTCACAGTGGTCACCTAAGATCATCTGT | + |
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Preference number: 1 (lower is better) Translates to: ETMEQLFSTYRLSPL*QSNDLSQWSPKIIC Trigger: ACAGATGATCTTAGGTGACCACTGTGAAAGGTCATTTGACTGCCAAAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTaGCTCAGGGTGGATGGTTACTCTCAACCACTGTGGTGGTCTAAA | + |
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Preference number: 1 (lower is better) Translates to: SCNKMQEQPEGESLA*LRVDGYSQPLWWSK Trigger: TTTAGACCACCACAGTGGTTGAGAGTAACCATCCACCCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR GCA 90 bp | TGGGAAGTAGATATGGCCTACAGTCATAGAGGAAATATGCCTGTTTaGTCCATACTTGAATATTCTCCTTCACCCAGATTTCTGTATAAC | + |
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Preference number: 1 (lower is better) Translates to: WEVDMAYSHRGNMPV*SILEYSPSPRFLYN Trigger: GTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTATGGAGCAAACAGGCATATTTCCTCTATGACTGTAGGCCATATCTACTTCCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTTATGTGTGTATATATAAGAAATGTGTaGTGTGTGAAGAATGAAGACAGCAGGGTTTCTCTTACATATAGA | + |
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Preference number: 1 (lower is better) Translates to: VCVCVCVMCVYIRNV*CVKNEDSRVSLTYR Trigger: TCTATATGTAAGAGAAACCCTGCTGTCTTCATTCTTCACACATCACACATTTCTTATATATACACACATAACACACACACACACACACAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR GCA 90 bp | ACATCTGCACCTGCAGGGGTTCTCACCTTGGTCATTTCTTTGGCGTTGATGAAGATGAAGTCTCTGGGATaGTTGAGGTGTGAAGAACGG | + |
|
Preference number: 2 (lower is better) Translates to: TSAPAGVLTLVISLALMKMKSLG*LRCEER Trigger: CCGTTCTTCACACCTCAAGCATCCCAGAGACTTCAT...CTTCATCAACGCCAAAGAAATGACCAAGGTGAGAACCCCTGCAGGTGCAGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 90 bp | GGAACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTaGTCACCCCTTTGGCAGTCAAATGACCTTTCACAGTGGTCACCT | + |
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Preference number: 2 (lower is better) Translates to: GTEAETMEQLFSTYR*SPLWQSNDLSQWSP Trigger: AGGTGACCACTGTGAAAGGTCATTTGACTGCCAAAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | ACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTAAATGCTGGGCTGCGTaGTGTGGATGTCTACAGCTA | + |
|
Preference number: 2 (lower is better) Translates to: TEAETMEQLFSTYRLSPLKCWAA*CGCLQL Trigger: TAGCTGTAGACATCCACATCACGCAGCCCAGCATTT...AAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | GGTCTAAACAAGAACAGACCTCAGAGACTCATGAATCTTTGGTTCTCAGTTGGTAGCCAGAGCAGGAACTaGAGCAGAAACCATGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: GLNKNRPQRLMNLWFSVGSQSRN*SRNHGA Trigger: TGCTCCATGGTTTCTGCTTCAGTTCCTGCTCTGGCT...ACCAACTGAGAACCAAAGATTCATGAGTCTCTGAGGTCTGTTCTTGTTTAGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR CCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTGGCTCAGGAAGTTCCATCAGCCATaGGAGCCAGAGCAGGAACTG | + |
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Preference number: 2 (lower is better) Translates to: SCNKMQEQPEGESLAWLRKFHQP*EPEQEL Trigger: CAGTTCCTGCTCTGGCTCCCATGGCTGATGGAACTT...CCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 90 bp | ACAAGGACATCTGCACCTGCAGGGGTTCTCACCTTGGTCATTTCTTaGGCGTTGATGAAGACTTCAATTATCATTCAAGGCTTAGGCACA | + |
|
Preference number: 2 (lower is better) Translates to: TRTSAPAGVLTLVIS*ALMKTSIIIQGLGT Trigger: TGTGCCTAAGCCTTGAATGATAATTGAAGTCTTCATCAACGCCAAAGAAATGACCAAGGTGAGAACCCCTGCAGGTGCAGATGTCCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTGGCTCAGGAAGGACACTTGCCATTaGATGGCACTCCCTACCCTT | + |
|
Preference number: 2 (lower is better) Translates to: SCNKMQEQPEGESLAWLRKDTCH*MALPTL Trigger: AAGGGTAGGGAGTGCCATTCAATGGCAAGTGTCCTT...CCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR GCA 90 bp | GGTCTAAACAAGAACAGACCTCAGAGACTCATGAATCTTTGGTTCTCAGTTGGTCATGGAGAGTGTCTCTaGAGCTATGAAGTCTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: GLNKNRPQRLMNLWFSVGHGECL*SYEVSG Trigger: CCCAGAGACTTCATAGCTGCAGAGACACTCTCCATG...ACCAACTGAGAACCAAAGATTCATGAGTCTCTGAGGTCTGTTCTTGTTTAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR GCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTGGCTCAGGCAGGAAATGCTGGGCTaGGTGATGTGGATGTCTACA | + |
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Preference number: 2 (lower is better) Translates to: SCNKMQEQPEGESLAWLRQEMLG*VMWMST Trigger: TGTAGACATCCACATCACGCAGCCCAGCATTTCCTG...CCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR GCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTGGCTCAGGCATGAGGGATTGATATaGCCTGGTCTTTTTCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: SCNKMQEQPEGESLAWLRHEGLI*PGLFLH Trigger: GTGCAGAAAAAGACCAGGGCATATCAATCCCTCATG...CCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAGTCAAATGACCTTTCACAGTGGTCACCTAAGATCATCTGTATACAAGACATGCAGGCAAGCTGTCTaGAGACTTTTATGTGTTGTA | + |
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Preference number: 2 (lower is better) Translates to: GSQMTFHSGHLRSSVYKTCRQAV*RLLCVV Trigger: TACAACACATAAAAGTCTTCAGACAGCTTGCCTGCA...TGTCTTGTATACAGATGATCTTAGGTGACCACTGTGAAAGGTCATTTGACTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | ACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTTGGTTGAGCAAGAGCTaGTTGATACATAAAGCATCT | + |
|
Preference number: 2 (lower is better) Translates to: TEAETMEQLFSTYRLSPLWLSKS*LIHKAS Trigger: AGATGCTTTATGTATCAATCAGCTCTTGCTCAACCA...AAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | TTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCATTGCACGCTGATTGTTTCTaGAGGCTCCTTCATCAGAAT | + |
|
Preference number: 2 (lower is better) Translates to: LNILLHPDFCITQGHLPLHADCF*RLLHQN Trigger: ATTCTGATGAAGGAGCCTTCAGAAACAATCAGCGTG...CAATGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR CCA 90 bp | ACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTAATGACCTTTCACAGTaGTCACCTAAGATCATCTGT | + |
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Preference number: 2 (lower is better) Translates to: TEAETMEQLFSTYRLSPLNDLSQ*SPKIIC Trigger: ACAGATGATCTTAGGTGACCACTGTGAAAGGTCATT...AAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 90 bp | ATATGGCCTACAGTCATAGAGGAAATATGCCTGTTTGCTCCATACTaGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACAC | + |
|
Preference number: 2 (lower is better) Translates to: IWPTVIEEICLFAPY*NILLHPDFCITQGH Trigger: GTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTATGGAGCAAACAGGCATATTTCCTCTATGACTGTAGGCCATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR GCA 90 bp | AACCCTTCACACTTTGCTTTCTCTTCCCATGGTAAATGTCATGACCCCAAACAAGTCATAGAGGAAATATaGCTGTTTGCTCCATACTTG | + |
|
Preference number: 2 (lower is better) Translates to: NPSHFAFSSHGKCHDPKQVIEEI*LFAPYL Trigger: CAAGTATGGAGCAAACAGGCATATTTCCTCTATGAC...TTGTTTGGGGTCATGACATTTACCATGGGAAGAGAAAGCAAAGTGTGAAGGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR-3UTR TCA 90 bp | AATTACAGTTTTGCAGTAGCATTGAAAATAACTTTATGGTTGAGGGTCACCACAGCCTACAGGCTAATCTaGCTGAGTCAAATACCTAGT | + |
|
Preference number: 2 (lower is better) Translates to: NYSFAVALKITLWLRVTTAYRLI*LSQIPS Trigger: ACTAGGTATTTGACTCAGTCAGATTAGCCTGTAGGC...TGTGGTGACCCTCAACCATAAAGTTATTTTCAATGCTACTGCAAAACTGTAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 72 bp | TTGAGAGTCCCTCAGGAAATGCTGGGCTGCGTGATGTaGATGTCTACAGCTAACAAGGACATCTGCACCTGC | + |
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Preference number: 3 (lower is better) Translates to: LRVPQEMLGCVM*MSTANKDICTC Trigger: GCAGGTGCAGATGTCCTTGTTAGCTGTAGACATCCACATCACGCAGCCCAGCATTTCCTGAGGGACTCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 72 bp | GCCTGGCTCAGGGTGGATGGTTACTCTCAACCACTGTaGTGGTCTAAACAAGAACAGACCTCAGAGACTCAT | + |
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Preference number: 3 (lower is better) Translates to: AWLRVDGYSQPL*WSKQEQTSETH Trigger: ATGAGTCTCTGAGGTCTGTTCTTGTTTAGACCACCACAGTGGTTGAGAGTAACCATCCACCCTGAGCCAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR GCA 72 bp | ATGGAGAGTGTCTCTGCAGCTATGAAGTCTCTGGGATaGTTGAGGTGTGAAGAACGGGTAAAGGTCTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: MESVSAAMKSLG*LRCEERVKVLS Trigger: TGACAAGACCTTTACCCGTTCTTCACACCTCAAGCATCCCAGAGACTTCATAGCTGCAGAGACACTCTCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 72 bp | TGGCTCAGGGTGGATGGTTACTCTCAACCACTGTGGTaGTCTAAACAAGAACAGACCTCAGAGACTCATGAA | + |
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Preference number: 3 (lower is better) Translates to: WLRVDGYSQPLW*SKQEQTSETHE Trigger: TTCATGAGTCTCTGAGGTCTGTTCTTGTTTAGACCACCACAGTGGTTGAGAGTAACCATCCACCCTGAGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 72 bp | AAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTaGCTCAGGGTGGATGGTTACTCTCAACCACTGTGG | + |
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Preference number: 3 (lower is better) Translates to: KMQEQPEGESLA*LRVDGYSQPLW Trigger: CCACAGTGGTTGAGAGTAACCATCCACCCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 72 bp | ATCTGCCACGTCCTCCCCACGTGCAGGCAAGCTGTCTaGAGACTTTTATGTGTTGTAAGTTATGAAGAACCT | + |
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Preference number: 3 (lower is better) Translates to: ICHVLPTCRQAV*RLLCVVSYEEP Trigger: AGGTTCTTCATAACTTACAACACATAAAAGTCTTCAGACAGCTTGCCTGCACGTGGGGAGGACGTGGCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 72 bp | CTCTCAGGTGTGAATTGTTTGTGGTTGAGCAAGAGCTaGTTGATACATAAAGCATCTGCCACGTCCTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: LSGVNCLWLSKS*LIHKASATSSP Trigger: TGGGGAGGACGTGGCAGATGCTTTATGTATCAATCAGCTCTTGCTCAACCACAAACAATTCACACCTGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 72 bp | AATGGATTCCCCGATGCTTATAGAGACATGAGGGATTaGTATGCCCTGGTCTTTTTCTGCACGTGTGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: NGFPDAYRDMRD*YALVFFCTCVG Trigger: CCCTACACACGTGCAGAAAAAGACCAGGGCATATCAATCCCTCATGTCTCTATAAGCATCGGGGAATCCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 72 bp | TTGAGGTGTGAAGAACGGGTAAAGGTCTTGTCACGCTaGTTGTTTCTGAAGGCTCCTTCATCAGAATGGATT | + |
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Preference number: 3 (lower is better) Translates to: LRCEERVKVLSR*LFLKAPSSEWI Trigger: AATCCATTCTGATGAAGGAGCCTTCAGAAACAATCAGCGTGACAAGACCTTTACCCGTTCTTCACACCTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CCA 72 bp | AGATTTCTGTATAACCCAAGGACACTTGCCATTGAATaGCACTCCCTACCCTTGAACAGACTAATGCACATC | + |
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Preference number: 3 (lower is better) Translates to: RFLYNPRTLAIE*HSLPLNRLMHI Trigger: GATGTGCATTAGTCTGTTCAAGGGTAGGGAGTGCCATTCAATGGCAAGTGTCCTTGGGTTATACAGAAATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR TCA 72 bp | AGGGTTTGTTTTCATTGTGAGTGCTCTGGTGTCCAGTaGAGGTTGAACAAATCTAAAGGCTGTGTGACACTA | + |
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Preference number: 3 (lower is better) Translates to: RVCFHCECSGVQ*RLNKSKGCVTL Trigger: TAGTGTCACACAGCCTTTAGATTTGTTCAACCTTCACTGGACACCAGAGCACTCACAATGAAAACAAACCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR GCA 72 bp | GATATGGCCTACAGTCATAGAGGAAATATGCCTGTTTaGTCCATACTTGAATATTCTCCTTCACCCAGATTT | + |
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Preference number: 3 (lower is better) Translates to: DMAYSHRGNMPV*SILEYSPSPRF Trigger: AAATCTGGGTGAAGGAGAATATTCAAGTATGGAGCAAACAGGCATATTTCCTCTATGACTGTAGGCCATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR GCA 72 bp | GAAGACAGCAGGGTTTCTCTTACATATAGATTAAAATaGTGCAGATTTTCCAATATCTTTGCTGACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: EDSRVSLTYRLK*CRFSNIFADTE Trigger: CTCTGTGTCAGCAAAGATATTGGAAAATCTGCAGCATTTTAATCTATATGTAAGAGAAACCCTGCTGTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CCA 90 bp | CCACGTCCTCCCCACGTGCAGGCAAGCTGTCTGAAGACTTTTATGTGTTGTAAGCTTCTCAGGCCACTGTaGACTGACTGCCTTGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: PRPPHVQASCLKTFMCCKLLRPL*TDCLAL Trigger: AAGGGCAAGGCAGTCAGTCCACAGTGGCCTGAGAAG...CTTACAACACATAAAAGTCTTCAGACAGCTTGCCTGCACGTGGGGAGGACGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | ACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTCAGGCCACTGTGGACTaGCTGCCTTGCCCTTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: TEAETMEQLFSTYRLSPLQATVD*LPCPSR Trigger: TCGAGAAGGGCAAGGCAGTCAGTCCACAGTGGCCTG...AAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 72 bp | GAGAGTGTCTCTGCAGCTATGAAGTCTCTGGGATGCTaGAGGTGTGAAGAACGGGTAAAGGTCTTGTCACGC | + |
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Preference number: 4 (lower is better) Translates to: ESVSAAMKSLGC*RCEERVKVLSR Trigger: GCGTGACAAGACCTTTACCCGTTCTTCACACCTCAAGCATCCCAGAGACTTCATAGCTGCAGAGACACTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CCA 90 bp | CCACGTCCTCCCCACGTGCAGGCAAGCTGTCTGAAGACTTTTATGTGTTGTAAGACATTCCGAAGCTCCTaGTTCTTCTCCAGAAATCTG | + |
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Preference number: 4 (lower is better) Translates to: PRPPHVQASCLKTFMCCKTFRSS*FFSRNL Trigger: CAGATTTCTGGAGAAGAACCAGGAGCTTCGGAATGT...CTTACAACACATAAAAGTCTTCAGACAGCTTGCCTGCACGTGGGGAGGACGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | GGTCTAAACAAGAACAGACCTCAGAGACTCATGAATCTTTGGTTCTCAGTTGGTTCGGGGCACAGTTGCTaGTTTCCTCTTCACATTCCG | + |
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Preference number: 4 (lower is better) Translates to: GLNKNRPQRLMNLWFSVGSGHSC*FPLHIP Trigger: CGGAATGTGAAGAGGAAAGCAGCAACTGTGCCCCGA...ACCAACTGAGAACCAAAGATTCATGAGTCTCTGAGGTCTGTTCTTGTTTAGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | AGAGCAGGAACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCCTCGGGGCACAGTTaGTGCTTTCCTCTTCACATT | + |
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Preference number: 4 (lower is better) Translates to: RAGTEAETMEQLFSTYRLSSGHS*CFPLHI Trigger: AATGTGAAGAGGAAAGCAGCAACTGTGCCCCGAGGA...CAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGTTCCTGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | ACTGAAGCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTTGTCACCCCTTGGAAGTCTTTCGCACTaGCTCCTGAATTCTTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TEAETMEQLFSTYRLSPLGSLSH*LLNSSK Trigger: CTTGGAAGAATTCAGGAGTCAGTGCGAAAGACTTCC...AAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGCTTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | TACATGGAGAGTGTCTCTGCAGCTATGAAGTCTCTGGGATGCTTGAGGTGTGAAATTTTCTGGTGGTTATaGAGTATGGAGGGCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: YMESVSAAMKSLGCLRCEIFWWL*SMEGRE Trigger: TTCTCTGCCCTCCATACTTCATAACCACCAGAAAAT...TTCACACCTCAAGCATCCCAGAGACTTCATAGCTGCAGAGACACTCTCCATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 72 bp | CTAACAAGGACATCTGCACCTGCAGGGGTTCTCACCTaGGTCATTTCTTTGGCGTTGATGAAGACTTCAATT | + |
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Preference number: 4 (lower is better) Translates to: LTRTSAPAGVLT*VISLALMKTSI Trigger: AATTGAAGTCTTCATCAACGCCAAAGAAATGACCAAGGTGAGAACCCCTGCAGGTGCAGATGTCCTTGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| 3UTR CAA 72 bp | GCAGAAACCATGGAGCAGCTTTTCTCAACTTATAGGTaGTCACCCCTTTGGCAGTCAAATGACCTTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: AETMEQLFSTYR*SPLWQSNDLSQ Trigger: CTGTGAAAGGTCATTTGACTGCCAAAGGGGTGACAACCTATAAGTTGAGAAAAGCTGCTCCATGGTTTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | AACCCTTCACACTTTGCTTTCTCTTCCCATGGTAAATGTCATGACCCCAAACAAGGAAATCCTCTTCTCTaGGTTCCTGGAAGTCTTTCG | + |
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Preference number: 4 (lower is better) Translates to: NPSHFAFSSHGKCHDPKQGNPLL*VPGSLS Trigger: CGAAAGACTTCCAGGAACGCAGAGAAGAGGATTTCC...TTGTTTGGGGTCATGACATTTACCATGGGAAGAGAAAGCAAAGTGTGAAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | AACCCTTCACACTTTGCTTTCTCTTCCCATGGTAAATGTCATGACCCCAAACAATCCTGCTGTAGGCTTTaGCACATTTCTCACAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: NPSHFAFSSHGKCHDPKQSCCRL*HISHRC Trigger: ACACCTGTGAGAAATGTGGCAAAGCCTACAGCAGGA...TTGTTTGGGGTCATGACATTTACCATGGGAAGAGAAAGCAAAGTGTGAAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CCA 90 bp | TCATGTAATAAAATGCAAGAGCAACCTGAAGGAGAAAGTTTAGCCTGGCTCAGGGGTGGTTATGAAGTATaGAGGGCAGAGAAAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: SCNKMQEQPEGESLAWLRGGYEV*RAEKRP Trigger: AGGCCTTTTCTCTGCCCTCCATACTTCATAACCACC...CCTGAGCCAGGCTAAACTTTCTCCTTCAGGTTGCTCTTGCATTTTATTACATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | TACTTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCACAATGGCCACATCCCTaGATGACAGCATTTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: YLNILLHPDFCITQGHLPQWPHP*MTAFQL Trigger: CAGTTGAAATGCTGTCATTCAGGGATGTGGCCATTG...TGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | TTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCATTGGTGTCTACTGAGGGCTaGAAGATTGCTGAAGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LNILLHPDFCITQGHLPLVSTEG*KIAEGF Trigger: AAACCCTTCAGCAATCTTTCAGCCCTCAGTAGACAC...CAATGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR TCA 90 bp | TACTTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCAGATTTCTGTCCACTATaGGCTTTCTTGTGTCGACTG | + |
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Preference number: 4 (lower is better) Translates to: YLNILLHPDFCITQGHLPDFCPL*AFLCRL Trigger: CAGTCGACACAAGAAAGCTCATAGTGGACAGAAATC...TGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | TACATGGAGAGTGTCTCTGCAGCTATGAAGTCTCTGGGATGCTTGAGGTGTGAAGTGTTTTGTAAAGTCTaGAGGACTGGAAAACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: YMESVSAAMKSLGCLRCEVFCKV*RTGKLF Trigger: AAAAAGTTTTCCAGTCCTGCAGACTTTACAAAACAC...TTCACACCTCAAGCATCCCAGAGACTTCATAGCTGCAGAGACACTCTCCATGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | AATTACAGTTTTGCAGTAGCATTGAAAATAACTTTATGGTTGAGGGTCACCACAATGCTGATAGGAGTCTaGTCTTCTCAGGCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: NYSFAVALKITLWLRVTTMLIGV*SSQATV Trigger: CACAGTGGCCTGAGAAGAGCAGACTCCTATCAGCAT...TGTGGTGACCCTCAACCATAAAGTTATTTTCAATGCTACTGCAAAACTGTAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR GCA 90 bp | TACTTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCAGACTGGAAAACTTTTTaGCACATACTTCACACTCGT | + |
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Preference number: 4 (lower is better) Translates to: YLNILLHPDFCITQGHLPDWKTF*HILHTR Trigger: ACGAGTGTGAAGTATGTGGCAAAAAGTTTTCCAGTC...TGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CAA 90 bp | TTGAGAGTCCCTCAGGAAATGCTGGGCTGCGTGATGTGGATGTCTACAGCTAACGGCAGAGAAAAGGCCTaGTCGCATATGTCACACGTG | + |
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Preference number: 5 (lower is better) Translates to: LRVPQEMLGCVMWMSTANGREKA*SHMSHV Trigger: CACGTGTGACATATGCGACAAGGCCTTTTCTCTGCC...GTTAGCTGTAGACATCCACATCACGCAGCCCAGCATTTCCTGAGGGACTCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS TCA 90 bp | CTCTGTGGAAATCCTCTTCTCTGCGTTCCTGGAAGTCTTTCGCACTaGCTCCTGAATTCTTCCAAGCTGAGCTTCCTGACCTCTGATCTG | + |
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Preference number: 5 (lower is better) Translates to: LCGNPLLCVPGSLSH*LLNSSKLSFLTSDL Trigger: CAGATCAGAGGTCAGGAAGCTCAGCTTGGAAGAATTCAGGAGTCAGTGCGAAAGACTTCCAGGAACGCAGAGAAGAGGATTTCCACAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS CCA 90 bp | CCTCGGGGCACAGTTGCTGCTTTCCTCTTCACATTCCGAAGCTCCTaGTTCTTCTCCAGAAATCTGACCAATAACGGCTTAGAGAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: PRGTVAAFLFTFRSS*FFSRNLTNNGLEKE Trigger: TTCTTTCTCTAAGCCGTTATTGGTCAGATTTCTGGAGAAGAACCAGGAGCTTCGGAATGTGAAGAGGAAAGCAGCAACTGTGCCCCGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CAA 90 bp | GGTCTAAACAAGAACAGACCTCAGAGACTCATGAATCTTTGGTTCTCAGTTGGTTTCCTCGGGGCACAGTaGCTGCTTTCCTCTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: GLNKNRPQRLMNLWFSVGFLGAQ*LLSSSH Trigger: ATGTGAAGAGGAAAGCAGCAACTGTGCCCCGAGGAA...ACCAACTGAGAACCAAAGATTCATGAGTCTCTGAGGTCTGTTCTTGTTTAGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CAA 90 bp | AACCCTTCACACTTTGCTTTCTCTTCCCATGGTAAATGTCATGACCCCAAACAAGTGAATTCTCAGGTGTaGAGTAAGGACCGAGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: NPSHFAFSSHGKCHDPKQVNSQV*SKDRAL Trigger: AAGAGCTCGGTCCTTACTCAACACCTGAGAATTCAC...TTGTTTGGGGTCATGACATTTACCATGGGAAGAGAAAGCAAAGTGTGAAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CAA 90 bp | TACTTGAATATTCTCCTTCACCCAGATTTCTGTATAACCCAAGGACACTTGCCAGGACTGGAAAACTTTTaGCCACATACTTCACACTCG | + |
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Preference number: 5 (lower is better) Translates to: YLNILLHPDFCITQGHLPGLENF*PHTSHS Trigger: CGAGTGTGAAGTATGTGGCAAAAAGTTTTCCAGTCC...TGGCAAGTGTCCTTGGGTTATACAGAAATCTGGGTGAAGGAGAATATTCAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS-3UTR CAA 90 bp | GGCAGTCAAATGACCTTTCACAGTGGTCACCTAAGATCATCTGTATACAAGACATCCGGTATGAACTCTTaGGTGTTTTGTAAAGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: GSQMTFHSGHLRSSVYKTSGMNS*VFCKVC Trigger: GCAGACTTTACAAAACACCAAAGAGTTCATACCGGA...TGTCTTGTATACAGATGATCTTAGGTGACCACTGTGAAAGGTCATTTGACTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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| CDS TCA 72 bp | AATCCTCTTCTCTGCGTTCCTGGAAGTCTTTCGCACTaGCTCCTGAATTCTTCCAAGCTGAGCTTCCTGACC | + |
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Preference number: 6 (lower is better) Translates to: NPLLCVPGSLSH*LLNSSKLSFLT Trigger: GGTCAGGAAGCTCAGCTTGGAAGAATTCAGGAGTCAGTGCGAAAGACTTCCAGGAACGCAGAGAAGAGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091526.4 |
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