Pregenerated sensors for RSL1D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005846Ensembl transcript IDs: ENSMUST00000119953.2, ENSMUST00000230002.2, ENSMUST00000230232.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGTACCTTTaGTTGGGTGGGCTTTGTTTGACAGTCCTGGGTACTGAAGCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: LLVKKAVMEPAAEYL*LGGLCLTVLGTEAR Trigger: CCTGGCTTCAGTACCCAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR CAA 90 bp | CTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTaGGGTGGGCTTTGTTTGACAGTCCTGGGTACTGAAGCCAGGATA | + |
|
Preference number: 2 (lower is better) Translates to: LVKKAVMEPAAEYLL*GGLCLTVLGTEARI Trigger: TATCCTGGCTTCAGTACCCAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR GCA 90 bp | GCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACAACATCTGCCTATCTCTaGATTCCACAGTGTGTGAGT | + |
|
Preference number: 2 (lower is better) Translates to: AVMEPAAEYLLLGGLCLTTSAYL*IPQCVS Trigger: ACTCACACACTGTGGAATGCAGAGATAGGCAGATGT...TGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR TCA 90 bp | TCGAATTCTCGCATCAGTAATAAAGACTTCAAAGCTACCCAGGAGGCGGAGCTTTTAAAAGGGATAATCTaGGAGATAGTGTTAACTCCG | + |
|
Preference number: 2 (lower is better) Translates to: SNSRISNKDFKATQEAELLKGII*EIVLTP Trigger: CGGAGTTAACACTATCTCTCAGATTATCCCTTTTAA...AAGCTCCGCCTCCTGGGTAGCTTTGAAGTCTTTATTACTGATGCGAGAATTCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000230232.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTCTGCTTTATCCCAGGTaGCCAAATGCTTTTGTAGAA | + |
|
Preference number: 2 (lower is better) Translates to: RILHMLAKCYTISPGLKSLLYPR*PNAFVE Trigger: TTCTACAAAAGCATTTGGTCACCTGGGATAAAGCAG...AGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTTTCTCTGATAAAAATGCCTCCCTATGTGTGAGGGCAAATGCCGTCGAATTCTTCTGTCTGTTCAGGTaGATCGAATTCATCTTTTGT | + |
|
Preference number: 2 (lower is better) Translates to: SFSDKNASLCVRANAVEFFCLFR*IEFIFC Trigger: ACAAAAGATGAATTCGATTCACCTGAACAGACAGAA...GAATTCGACGGCATTTGCCCTCACACATAGGGAGGCATTTTTATCAGAGAAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230232.2 |
||
| 3UTR-3UTR TCA 90 bp | TGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCACACTGGCCTTTAAATACTaGATCCTGCTTTATCCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: CLKPLVCTIEILNSEAPTLAFKY*ILLYPR Trigger: CCTGGGATAAAGCAGGATTCAGTATTTAAAGGCCAG...TGTGGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR CCA 90 bp | TGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCACAGTACCTTTTGTTGGGTaGGCTTTGTTTGACAGTCCT | + |
|
Preference number: 2 (lower is better) Translates to: CLKPLVCTIEILNSEAPTVPFVG*ALFDSP Trigger: AGGACTGTCAAACAAAGCCCACCCAACAAAAGGTAC...TGTGGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR TCA 90 bp | GATTCTTTGCCAGAAGGTTCACAGACACTGGAACTTTCTTTCTCTGATAAAAATCGAATTCATCTTTTGTaGAGAGACATACATCTGAGG | + |
|
Preference number: 2 (lower is better) Translates to: DSLPEGSQTLELSFSDKNRIHLL*RDIHLR Trigger: CCTCAGATGTATGTCTCTTCACAAAAGATGAATTCG...ATTTTTATCAGAGAAAGAAAGTTCCAGTGTCTGTGAACCTTCTGGCAAAGAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230232.2 |
||
| 3UTR TCA 72 bp | CAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTaGCAGTCCTGGGTACTGAAGCCAGGATATTGCATA | + |
|
Preference number: 3 (lower is better) Translates to: QQQSTFCWVGFV*QSWVLKPGYCI Trigger: TATGCAATATCCTGGCTTCAGTACCCAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCACATTTGTTGGGTGGGCTTaGTTTGACAGTCCTGGGTAC | + |
|
Preference number: 3 (lower is better) Translates to: CLKPLVCTIEILNSEAPTFVGWA*FDSPGY Trigger: GTACCCAGGACTGTCAAACAAAGCCCACCCAACAAA...TGTGGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | ACATCTGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTTTTTGCTTCTTCCCTaGGGTCCCAGGGGCGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: TSAYLCIPQCVSVPPHPVFLLLP*GPRGGG Trigger: GCCTCCGCCCCTGGGACCTCAGGGAAGAAGCAAAAA...GACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCAGATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | ACATCTGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCCTGAGATGTGACAAATaGAGAAAAGATGGGCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: TSAYLCIPQCVSVPPHPVLRCDK*RKDGQG Trigger: TCCCTGCCCATCTTTTCTTCATTTGTCACATCTCAG...GACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCAGATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | ACATCTGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCACTGCCTTTCTAATCTaGTCTCTGTCCAGCTGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: TSAYLCIPQCVSVPPHPVTAFLI*SLSSCK Trigger: TTTACAGCTGGACAGAGAGCAGATTAGAAAGGCAGT...GACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCAGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | GGCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACTTTTGTGCGCCTTGTTaGTCTTTTTCTTCTGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: GSDGTSSRVPFVGWALFDFCAPC*SFSSGL Trigger: GAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAA...GTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | GCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACAGAAGGAACTGGCCTCTaGCTTTCTGAATTCCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: AVMEPAAEYLLLGGLCLTEGTGL*LSEFLN Trigger: GTTCAGGAATTCAGAAAGCCAGAGGCCAGTTCCTTC...TGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| 3UTR CAA 72 bp | AAAAAGGCAGTGATGGAACCAGCAGCAGAGTACCTTTaGTTGGGTGGGCTTTGTTTGACAGTCCTGGGTACT | + |
|
Preference number: 4 (lower is better) Translates to: KKAVMEPAAEYL*LGGLCLTVLGT Trigger: AGTACCCAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGCCTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | CATTTAAGTCCCAGACTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGTTGGTCTTTTTCTTCTaGGCTCCTGGGCTCTTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: HLSPRLLVKKAVMEPAAELVFFF*APGLFA Trigger: AGCGAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAA...CTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAGTCTGGGACTTAAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | TGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTAACTACAGCGTTTTCATCCTaGGATGTGACAAATGAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CLSLHSTVCECATTPCLTTAFSS*DVTNEE Trigger: TTCTTCATTTGTCACATCTCAGGATGAAAACGCTGT...AGTTAGACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | ATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACAGTCCTGCGAATTCATCTTTTGTaGAGAGACATACATCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MEPAAEYLLLGGLCLTVLRIHLL*RDIHLR Trigger: CCTCAGATGTATGTCTCTTCACAAAAGATGAATTCG...CAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | TGGGTACTGAAGCCAGGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCTGTCTCTGGGTGTGTTaGAAGCCTTCTTTCCAGATT | + |
|
Preference number: 4 (lower is better) Translates to: WVLKPGYCICWQSVIPSACLWVC*KPSFQI Trigger: AATCTGGAAAGAAGGCTTCCAACACACCCAGAGACA...GGCTGATGGTATAACACTTTGCCAGCATATGCAATATCCTGGCTTCAGTACCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | GCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACATTAAAAGGGATAATCTaGGAGATAGTGTTAACTCCG | + |
|
Preference number: 4 (lower is better) Translates to: AVMEPAAEYLLLGGLCLTLKGII*EIVLTP Trigger: CGGAGTTAACACTATCTCTCAGATTATCCCTTTTAA...TGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | CTCAAACTCACATACATCTGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCTACCAGTTGTGGAATTaGTTCTTCACATTCCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LKLTYICLSLHSTVCECAYQLWN*FFTFLC Trigger: ACAGAGGAATGTGAAGAAGCAATTCCACAACTGGTA...GGCACACTCACACACTGTGGAATGCAGAGATAGGCAGATGTATGTGAGTTTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | ATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACAGTCCTGAAGGTTCACAGACACTaGAACTTTCTTTCTCTGATA | + |
|
Preference number: 4 (lower is better) Translates to: MEPAAEYLLLGGLCLTVLKVHRH*NFLSLI Trigger: TATCAGAGAAAGAAAGTTCCAGTGTCTGTGAACCTT...CAGGACTGTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | CATTTAAGTCCCAGACTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGCAAATGAAGAAAAGATaGGCAGGGAAACCGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HLSPRLLVKKAVMEPAAEQMKKR*AGKPTS Trigger: AGAAGTCGGTTTCCCTGCCCATCTTTTCTTCATTTG...CTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAGTCTGGGACTTAAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | CATTTAAGTCCCAGACTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGCTTTTCTTTAGTTCTTaGTTCCTCAAACTACGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: HLSPRLLVKKAVMEPAAELFFSS*FLKLRR Trigger: CCTCCGTAGTTTGAGGAAGCAAGAACTAAAGAAAAG...CTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAGTCTGGGACTTAAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | GGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTGTGGAGTCTCTCCTATTaGTACCAGTTGTGGAATTGC | + |
|
Preference number: 4 (lower is better) Translates to: GYCICWQSVIPSAQDLNLWSLSY*YQLWNC Trigger: GCAATTCCACAACTGGTACCAATAGGAGAGACTCCA...CAGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | CATTTAAGTCCCAGACTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGTTCTGTCTGTTCAGGTaGATCGAATTCATCTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: HLSPRLLVKKAVMEPAAEFCLFR*IEFIFC Trigger: ACAAAAGATGAATTCGATTCACCTGAACAGACAGAA...CTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAGTCTGGGACTTAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | AGGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTATGTTGTCAACGATGTaGTCAGTCTCCATTCCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: RILHMLAKCYTISPGLKSMLSTM*SVSIPV Trigger: CACTGGAATGGAGACTGAGCACATCGTTGACAACAT...AGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | TATTGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCGAGGCAAAGGTACTTTaGCCCGAAGTTCTTTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: YCLKPLVCTIEILNSEAPEAKVL*PEVLSL Trigger: CAGAGAAAGAACTTCGGGTCAAAGTACCTTTGCCTC...GGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | GGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTGAGATATTACTTCCACTaGCTTTCTAATCTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GYCICWQSVIPSAQDLNLRYYFH*LSNLLS Trigger: AGAGAGCAGATTAGAAAGGCAGTGGAAGTAATATCT...CAGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | TATTGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCCTAGCTAACCCACTCTaGGTTAAAAGAGATGTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YCLKPLVCTIEILNSEAPLANPL*VKRDVA Trigger: GGCTACATCTCTTTTAACTCAGAGTGGGTTAGCTAG...GGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | TATTGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCTGGCCTCTGGCTTTCTaGATTCCTGAACATCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: YCLKPLVCTIEILNSEAPWPLAF*IPEHPF Trigger: AAAAGGATGTTCAGGAATTCAGAAAGCCAGAGGCCA...GGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | TTTGTAGAAAATAGGCTGGCCTCAAACTCACATACATCTGCCTATCTCTGCATTTATTGGTACCAGTTGTaGAATTGCTTCTTCACATTC | + |
|
Preference number: 4 (lower is better) Translates to: FVENRLASNSHTSAYLCIYWYQL*NCFFTF Trigger: GAATGTGAAGAAGCAATTCCACAACTGGTACCAATA...AATGCAGAGATAGGCAGATGTATGTGAGTTTGAGGCCAGCCTATTTTCTACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CCA 90 bp | GGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTGTACATTTTCTTTATCTaGAGTCTCTCCTATTGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GYCICWQSVIPSAQDLNLYIFFI*SLSYWY Trigger: GTACCAATAGGAGAGACTCCAGATAAAGAAAATGTA...CAGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR GCA 90 bp | TGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCACAACTTTCTGCTTTTTGTaGGCCTTGTTGGTCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: CLKPLVCTIEILNSEAPTTFCFL*ALLVFF Trigger: GAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGT...TGTGGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR TCA 90 bp | TGTCTCAAACCCCTAGTTTGTACAATAGAAATATTAAATTCAGAGGCACCCACATTTCATCCTGAGATGTaGCAAATGAAGAAAAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: CLKPLVCTIEILNSEAPTFHPEM*QMKKRW Trigger: CCATCTTTTCTTCATTTGTCACATCTCAGGATGAAA...TGTGGGTGCCTCTGAATTTAATATTTCTATTGTACAAACTAGGGGTTTGAGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS CCA 90 bp | CTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTCACTTGCACGTCGGTaGTGGTCGCCTCAGCGACCGAGGCACTGGGAGATTCGGACGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LCPAVKERSGSLARR*WSPQRPRHWEIRTQ Trigger: CTGCGTCCGAATCTCCCAGTGCCTCGGTCGCTGAGGCGACCACCACCGACGTGCAAGTGACCCCGACCGCTCTTTTACAGCTGGACAGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS GCA 90 bp | AAGGTCTGCTCTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTCACTTaGACGTCGGTGGTGGTCGCCTCAGCGACCGAGGCACTGGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: KVCSLSSCKRAVGVT*TSVVVASATEALGD Trigger: ATCTCCCAGTGCCTCGGTCGCTGAGGCGACCACCACCGACGTGCAAGTGACCCCGACCGCTCTTTTACAGCTGGACAGAGAGCAGACCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000230232.2 |
||
| CDS GCA 90 bp | CTAATCTGCTCTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTCACTTaGACGTCGGTGGTGGTCGCCTCAGCGACCGAGGCACTGGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: LICSLSSCKRAVGVT*TSVVVASATEALGD Trigger: ATCTCCCAGTGCCTCGGTCGCTGAGGCGACCACCACCGACGTGCAAGTGACCCCGACCGCTCTTTTACAGCTGGACAGAGAGCAGATTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS-3UTR CAA 90 bp | TGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTAACTCTGGAGTCTCTCCTATaGGTACCAGTTGTGGAATTG | + |
|
Preference number: 5 (lower is better) Translates to: CLSLHSTVCECATTPCLTLESLL*VPVVEL Trigger: CAATTCCACAACTGGTACCAATAGGAGAGACTCCAG...AGTTAGACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CAA 90 bp | TGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTAACTGTACCAGTTGTGGAATaGCTTCTTCACATTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: CLSLHSTVCECATTPCLTVPVVE*LLHIPL Trigger: CAGAGGAATGTGAAGAAGCAATTCCACAACTGGTAC...AGTTAGACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CAA 90 bp | ACATCTGCCTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTCCTATTGGTACCAGTaGTGGAATTGCTTCTTCACA | + |
|
Preference number: 5 (lower is better) Translates to: TSAYLCIPQCVSVPPHPVSYWYQ*WNCFFT Trigger: TGTGAAGAAGCAATTCCACAACTGGTACCAATAGGA...GACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAGGCAGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS GCA 90 bp | TTGGACTTTGAGCGATTAGATATTACTTCCACTGCCTTTCTAATCTaGTCTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTCACTTGCACG | + |
|
Preference number: 5 (lower is better) Translates to: LDFERLDITSTAFLI*SLSSCKRAVGVTCT Trigger: CGTGCAAGTGACCCCGACCGCTCTTTTACAGCTGGACAGAGAGCAGATTAGAAAGGCAGTGGAAGTAATATCTAATCGCTCAAAGTCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS-3UTR CAA 90 bp | GGCAGTGATGGAACCAGCAGCAGAGTACCTTTTGTTGGGTGGGCTTTGTTTGACGTAACTTTCTGCTTTTaGTGCGCCTTGTTGGTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: GSDGTSSRVPFVGWALFDVTFCF*CALLVF Trigger: AAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTAC...GTCAAACAAAGCCCACCCAACAAAAGGTACTCTGCTGCTGGTTCCATCACTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CAA 90 bp | CTATCTCTGCATTCCACAGTGTGTGAGTGTGCCACCACACCCTGTCTAACTATTTTGTCTCTGGGTGTGTaGGAAGCCTTCTTTCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: LSLHSTVCECATTPCLTILSLGV*EAFFPD Trigger: ATCTGGAAAGAAGGCTTCCAACACACCCAGAGACAA...AATAGTTAGACAGGGTGTGGTGGCACACTCACACACTGTGGAATGCAGAGATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS TCA 90 bp | ACAGCTAGGATGTTGTCAACGATGTGCTCAGTCTCCATTCCAGTGTaGCCAATACGGATCGTACTGCAAGAACCACGCTTAGAGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: TARMLSTMCSVSIPV*PIRIVLQEPRLEMF Trigger: AAACATCTCTAAGCGTGGTTCTTGCAGTACGATCCGTATTGGTCACACTGGAATGGAGACTGAGCACATCGTTGACAACATCCTAGCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS GCA 90 bp | TGTGGAATTGCTTCTTCACATTCCTCTGTAACTTTCTGCTTTTTGTaGGCCTTGTTGGTCTTTTTCTTCTGGGCTCCTGGGCTCTTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: CGIASSHSSVTFCFL*ALLVFFFWAPGLFA Trigger: AGCGAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTACAGAGGAATGTGAAGAAGCAATTCCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS TCA 90 bp | GCTTCCTCAAACTACGGAGGGAAACAGCGTTTTCATCCTGAGATGTaGCAAATGAAGAAAAGATGGGCAGGGAAACCGACTTCTCAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: ASSNYGGKQRFHPEM*QMKKRWAGKPTSQF Trigger: AAACTGAGAAGTCGGTTTCCCTGCCCATCTTTTCTTCATTTGTCACATCTCAGGATGAAAACGCTGTTTCCCTCCGTAGTTTGAGGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS TCA 90 bp | AGTTCTTGCTTCCTCAAACTACGGAGGGAAACAGCGTTTTCATCCTaGGATGTGACAAATGAAGAAAAGATGGGCAGGGAAACCGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSCFLKLRRETAFSS*DVTNEEKMGRETDF Trigger: GAAGTCGGTTTCCCTGCCCATCTTTTCTTCATTTGTCACATCTCAGGATGAAAACGCTGTTTCCCTCCGTAGTTTGAGGAAGCAAGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS-3UTR CAA 90 bp | CATTTAAGTCCCAGACTCCTTGTTAAAAAGGCAGTGATGGAACCAGCAGCAGAGCTTTGGACAGATTCTTaGCCAGAAGGTTCACAGACA | + |
|
Preference number: 5 (lower is better) Translates to: HLSPRLLVKKAVMEPAAELWTDS*PEGSQT Trigger: TGTCTGTGAACCTTCTGGCAAAGAATCTGTCCAAAG...CTCTGCTGCTGGTTCCATCACTGCCTTTTTAACAAGGAGTCTGGGACTTAAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS-3UTR CAA 90 bp | TGGGTACTGAAGCCAGGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCTGCTTTTTGTGCGCCTaGTTGGTCTTTTTCTTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: WVLKPGYCICWQSVIPSACFLCA*LVFFFW Trigger: CCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCA...GGCTGATGGTATAACACTTTGCCAGCATATGCAATATCCTGGCTTCAGTACCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS TCA 90 bp | TCTTTTGTGAAGAGACATACATCTGAGGATTCGGAGAGAATGCTATaGGGCAAAGGTACTTTGACCCGAAGTTCTTTCTCTGGAATTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SFVKRHTSEDSERML*GKGTLTRSSFSGIF Trigger: GAAAATTCCAGAGAAAGAACTTCGGGTCAAAGTACCTTTGCCTCATAGCATTCTCTCCGAATCCTCAGATGTATGTCTCTTCACAAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS-3UTR CAA 90 bp | AGGATATTGCATATGCTGGCAAAGTGTTATACCATCAGCCCAGGACTTAAATCTCATCGGTTAATCTCTTaGGACAGATTCTTTGCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: RILHMLAKCYTISPGLKSHRLIS*DRFFAR Trigger: TCTGGCAAAGAATCTGTCCAAAGAGATTAACCGATG...AGATTTAAGTCCTGGGCTGATGGTATAACACTTTGCCAGCATATGCAATATCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS GCA 72 bp | TCTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTCACTTaGACGTCGGTGGTGGTCGCCTCAGCGACCGAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: SLSSCKRAVGVT*TSVVVASATEA Trigger: TGCCTCGGTCGCTGAGGCGACCACCACCGACGTGCAAGTGACCCCGACCGCTCTTTTACAGCTGGACAGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 ENSMUST00000230232.2 |
||
| CDS CCA 72 bp | TTCTGCTTTTTGTGCGCCTTGTTGGTCTTTTTCTTCTaGGCTCCTGGGCTCTTCGCTGGAGCACTGCTAGCT | + |
|
Preference number: 6 (lower is better) Translates to: FCFLCALLVFFF*APGLFAGALLA Trigger: AGCTAGCAGTGCTCCAGCGAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS GCA 72 bp | GAGCGATTAGATATTACTTCCACTGCCTTTCTAATCTaGTCTCTGTCCAGCTGTAAAAGAGCGGTCGGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: ERLDITSTAFLI*SLSSCKRAVGV Trigger: GACCCCGACCGCTCTTTTACAGCTGGACAGAGAGCAGATTAGAAAGGCAGTGGAAGTAATATCTAATCGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS CAA 72 bp | CATTCCTCTGTAACTTTCTGCTTTTTGTGCGCCTTGTaGGTCTTTTTCTTCTGGGCTCCTGGGCTCTTCGCT | + |
|
Preference number: 6 (lower is better) Translates to: HSSVTFCFLCAL*VFFFWAPGLFA Trigger: AGCGAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTACAGAGGAATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS CAA 90 bp | ATTGCTTCTTCACATTCCTCTGTAACTTTCTGCTTTTTGTGCGCCTaGTTGGTCTTTTTCTTCTGGGCTCCTGGGCTCTTCGCTGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: IASSHSSVTFCFLCA*LVFFFWAPGLFAGA Trigger: TGCTCCAGCGAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTACAGAGGAATGTGAAGAAGCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS TCA 72 bp | ATGTTGTCAACGATGTGCTCAGTCTCCATTCCAGTGTaGCCAATACGGATCGTACTGCAAGAACCACGCTTA | + |
|
Preference number: 6 (lower is better) Translates to: MLSTMCSVSIPV*PIRIVLQEPRL Trigger: TAAGCGTGGTTCTTGCAGTACGATCCGTATTGGTCACACTGGAATGGAGACTGAGCACATCGTTGACAACAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS CAA 90 bp | AGTTGTGGAATTGCTTCTTCACATTCCTCTGTAACTTTCTGCTTTTaGTGCGCCTTGTTGGTCTTTTTCTTCTGGGCTCCTGGGCTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: SCGIASSHSSVTFCF*CALLVFFFWAPGLF Trigger: GAAGAGCCCAGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTACAGAGGAATGTGAAGAAGCAATTCCACAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS CAA 72 bp | TTTAAGACGGTCCCTGTGATACATCGGTTAATCTCTTaGGACAGATTCTTTGCCAGAAGGTTCACAGACACT | + |
|
Preference number: 6 (lower is better) Translates to: FKTVPVIHRLIS*DRFFARRFTDT Trigger: AGTGTCTGTGAACCTTCTGGCAAAGAATCTGTCCAAAGAGATTAACCGATGTATCACAGGGACCGTCTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||
| CDS CAA 72 bp | ATTGCTTCTTCACATTCCTCTGTAACTTTCTGCTTTTaGTGCGCCTTGTTGGTCTTTTTCTTCTGGGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: IASSHSSVTFCF*CALLVFFFWAP Trigger: AGGAGCCCAGAAGAAAAAGACCAACAAGGCGCACAAAAAGCAGAAAGTTACAGAGGAATGTGAAGAAGCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000119953.2 ENSMUST00000230002.2 |
||
| CDS CAA 90 bp | TTAGAGATGTTTAAGACGGTCCCTGTGATACATCGGTTAATCTCTTaGGACAGATTCTTTGCCAGAAGGTTCACAGACACTGGAACTTTC | + |
|
Preference number: 6 (lower is better) Translates to: LEMFKTVPVIHRLIS*DRFFARRFTDTGTF Trigger: GAAAGTTCCAGTGTCTGTGAACCTTCTGGCAAAGAATCTGTCCAAAGAGATTAACCGATGTATCACAGGGACCGTCTTAAACATCTCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119953.2 |
||