Pregenerated sensors for RSL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058900Ensembl transcript IDs: ENSMUST00000021997.8, ENSMUST00000225334.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAGGTGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAATAGGCATCCCCCACTGGCAACTCTCTaGCTAGCCCCTGCCTCCATC | + |
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Preference number: 2 (lower is better) Translates to: QVLSACQLSVKDWKNRHPPLATL*LAPASI Trigger: GATGGAGGCAGGGGCTAGCCAGAGAGTTGCCAGTGG...GGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR-3UTR CCA 90 bp | AAAAGAAACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTTTCTACACACTTGTGTaGATTGTCTTCAGAGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: KRNCQLSVLQVLSACQLSFYTLV*IVFRVK Trigger: CTTCACTCTGAAGACAATCCACACAAGTGTGTAGAA...AGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR CAA 90 bp | AGGAGTGATTTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATaGGGTATTATTCCTGGGTACACAGGGGCCGTTCCTTGTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: RSDLQLVSLLQLLGS*GIIPGYTGAVPCLF Trigger: GAAGAGACAAGGAACGGCCCCTGTGTACCCAGGAATAATACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAATCACTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGATTTGAGTTGGATACGGTTTGAAGGATTAGGAATGGTTTTTACCGCACACATAACAACATCCATTTaGCTGGTAGGAACAAGACTC | + |
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Preference number: 2 (lower is better) Translates to: IDLSWIRFEGLGMVFTAHITTSI*LVGTRL Trigger: GAGTCTTGTTCCTACCAGGCAAATGGATGTTGTTAT...GTGTGCGGTAAAAACCATTCCTAATCCTTCAAACCGTATCCAACTCAAATCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR-3UTR CCA 90 bp | TTTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATTGGGTATTATTCCTGGAAATGTCACCAGGAATaGCTTAGAGACAGCAAGACC | + |
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Preference number: 2 (lower is better) Translates to: FTISQFAAIVRIIGYYSWKCHQE*LRDSKT Trigger: GGTCTTGCTGTCTCTAAGCCATTCCTGGTGACATTT...CCAGGAATAATACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| 3UTR CCA 72 bp | CAGGTGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTaGAAGAATAGGCATCCCACTCTCCTGCCACTGGCA | + |
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Preference number: 3 (lower is better) Translates to: QVLSACQLSVKD*KNRHPTLLPLA Trigger: TGCCAGTGGCAGGAGAGTGGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR GCA 72 bp | AACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTaGCAACTCTCTGTCAAGGACTGGAAGAATAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: NCQLSVLQVLSA*QLSVKDWKNRH Trigger: ATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAATAGGCATCCCACTCCTACATTCTACACACTaGTGTGGATTGTCTTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: CSLPANSLSRTGRIGIPLLHSTH*CGLSSE Trigger: CTCTGAAGACAATCCACACAAGTGTGTAGAATGTAG...GAGTGGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR-3UTR CAA 90 bp | ATAAGGAGTGATTTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATTGGGTCCAAGGCCCTTGTATTaGCTCCAGAAATGTCACCAG | + |
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Preference number: 3 (lower is better) Translates to: IRSDLQLVSLLQLLGSLGPRPLY*LQKCHQ Trigger: CTGGTGACATTTCTGGAGCAAATACAAGGGCCTTGG...ACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAATCACTCCTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| 3UTR CCA 72 bp | AACCCATGCCATATTCAAGCACACTATAGAACACATTaGTTGGGAGGTTATAGTAAAGAGAAGTCTCTACTG | + |
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Preference number: 3 (lower is better) Translates to: NPCHIQAHYRTH*LGGYSKEKSLL Trigger: CAGTAGAGACTTCTCTTTACTATAACCTCCCAACCAATGTGTTCTATAGTGTGCTTGAATATGGCATGGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR TCA 72 bp | TCAACATTTGTGCTGCTGGGAGTAAGATGGTGGTGTTaGCATTTCAAACTAATTCACTTAATAGTCTACCCT | + |
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Preference number: 3 (lower is better) Translates to: STFVLLGVRWWC*HFKLIHLIVYP Trigger: AGGGTAGACTATTAAGTGAATTAGTTTGAAATGTCAACACCACCATCTTACTCCCAGCAGCACAAATGTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR GCA 90 bp | GGTACACAGGGGCCGTTCCTTGTCTCTTCATGTCCCAAGGCCCTTGTATTTGCTCCCAGGCTACGCTGCTaGCTGGACCAACCTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: GTQGPFLVSSCPKALVFAPRLRC*LDQPSC Trigger: ACAAGAAGGTTGGTCCAGGCAGCAGCGTAGCCTGGG...AGCAAATACAAGGGCCTTGGGACATGAAGAGACAAGGAACGGCCCCTGTGTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| CDS-3UTR TCA 90 bp | AAAAGAAACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTATTTGCTCATGTTCCTaGAGGGGTAGAGGAGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KRNCQLSVLQVLSACQLSICSCS*RGRGGG Trigger: TCCCCCTCCTCTACCCCTTCAGGAACATGAGCAAAT...AGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR GCA 90 bp | CTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAACAAGGCCCTTGTATTTaGTCCAGAAATGTCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: LCAPGALCLPTLCQGLEEQGPCI*SRNVTR Trigger: CCTGGTGACATTTCTGGAGCAAATACAAGGGCCTTG...TTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR GCA 90 bp | CAGGTGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAATAGGCATCCCGTGAGGAATAGCATTTaGCACACTCCTGACATTTGT | + |
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Preference number: 4 (lower is better) Translates to: QVLSACQLSVKDWKNRHPVRNSI*HTPDIC Trigger: ACAAATGTCAGGAGTGTGGCAAATGCTATTCCTCAC...GGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CCA 90 bp | CTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAATAGGCATCCCACTCTCAAATGTCACCAGGAATaGCTTAGAGACAGCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: LSACQLSVKDWKNRHPTLKCHQE*LRDSKT Trigger: GGTCTTGCTGTCTCTAAGCCATTCCTGGTGACATTT...GAGAGTGGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR TCA 90 bp | CTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAAATGTTTCCTAAGGGATaGGCGATAACAAAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LCAPGALCLPTLCQGLEEMFPKG*AITKGF Trigger: AAAGCCTTTTGTTATCGCTCATCCCTTAGGAAACAT...TTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CCA 90 bp | AAAAGAAACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTATGAGCAGAAACATCTaGAGCAGTCTTCACACTTGT | + |
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Preference number: 4 (lower is better) Translates to: KRNCQLSVLQVLSACQLSMSRNI*SSLHTC Trigger: ACAAGTGTGAAGACTGCTCCAGATGTTTCTGCTCAT...AGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR TCA 90 bp | AAAAGAAACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTATAGAAAGTGTTTTATaGGAACTAAGGGCCTTACCA | + |
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Preference number: 4 (lower is better) Translates to: KRNCQLSVLQVLSACQLSIESVL*ELRALP Trigger: TGGTAAGGCCCTTAGTTCTCATAAAACACTTTCTAT...AGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR GCA 90 bp | TTTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATTGGGTATTATTCCTGGAGCCCCAGGCTACGCTaGTGCCTGGACCAACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: FTISQFAAIVRIIGYYSWSPRLR*CLDQPS Trigger: AGAAGGTTGGTCCAGGCAGCAGCGTAGCCTGGGGCT...CCAGGAATAATACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| 3UTR CAA 72 bp | TTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATaGGGTATTATTCCTGGGTACACAGGGGCCGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQLVSLLQLLGS*GIIPGYTGAVP Trigger: AGGAACGGCCCCTGTGTACCCAGGAATAATACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| CDS-3UTR TCA 90 bp | GGGATTGATTTGAGTTGGATACGGTTTGAAGGATTAGGAATGGTTTTTACCGCATTTAAGGCAGGAAGGTaGGGAATAGCATTTGCCACA | + |
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Preference number: 4 (lower is better) Translates to: GIDLSWIRFEGLGMVFTAFKAGR*GIAFAT Trigger: TGTGGCAAATGCTATTCCTCACCTTCCTGCCTTAAA...TGCGGTAAAAACCATTCCTAATCCTTCAAACCGTATCCAACTCAAATCAATCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CCA 90 bp | GGGATTGATTTGAGTTGGATACGGTTTGAAGGATTAGGAATGGTTTTTACCGCACTGGAGAGAAATCAATaGCTACATCCCAGAAGGACA | + |
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Preference number: 4 (lower is better) Translates to: GIDLSWIRFEGLGMVFTALERNQ*LHPRRT Trigger: TGTCCTTCTGGGATGTAGCCATTGATTTCTCTCCAG...TGCGGTAAAAACCATTCCTAATCCTTCAAACCGTATCCAACTCAAATCAATCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| 3UTR CAA 72 bp | CTCAACATTTGTGCTGCTGGGAGTAAGATGGTGGTGTaGACATTTCAAACTAATTCACTTAATAGTCTACCC | + |
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Preference number: 4 (lower is better) Translates to: LNICAAGSKMVV*TFQTNSLNSLP Trigger: GGGTAGACTATTAAGTGAATTAGTTTGAAATGTCAACACCACCATCTTACTCCCAGCAGCACAAATGTTGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CAA 90 bp | AAAAGAAACTGCCAACTCTCTGTGCTCCAGGTGCTCTCTGCCTGCCAACTCTCTCCAAGGCCCTTGTATTaGCTCCAGAAATGTCACCAG | + |
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Preference number: 5 (lower is better) Translates to: KRNCQLSVLQVLSACQLSPRPLY*LQKCHQ Trigger: CTGGTGACATTTCTGGAGCAAATACAAGGGCCTTGG...AGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CAA 90 bp | TGCTCTCTGCCTGCCAACTCTCTGTCAAGGACTGGAAGAATAGGCATCCCACTCCATGTCCCAAGGCCCTaGTATTTGCTCCAGAAATGT | + |
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Preference number: 5 (lower is better) Translates to: CSLPANSLSRTGRIGIPLHVPRP*YLLQKC Trigger: ACATTTCTGGAGCAAATACAAGGGCCTTGGGACATG...GAGTGGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS-3UTR CAA 90 bp | GGTACACAGGGGCCGTTCCTTGTCTCTTCATGTCCCAAGGCCCTTGTATTTGCTCCTGGACCAACCTTCTaGTCAGAGACAACTGGAATA | + |
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Preference number: 5 (lower is better) Translates to: GTQGPFLVSSCPKALVFAPGPTF*SETTGI Trigger: TATTCCAGTTGTCTCTGACAAGAAGGTTGGTCCAGG...AGCAAATACAAGGGCCTTGGGACATGAAGAGACAAGGAACGGCCCCTGTGTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| CDS-3UTR CAA 90 bp | ATAAGGAGTGATTTACAATTAGTCAGTTTGCTGCAATTGTTAGGATCATTGGGTGACAACATTTCCTCCTaGACACAGATCCCGCACAGA | + |
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Preference number: 5 (lower is better) Translates to: IRSDLQLVSLLQLLGSLGDNISS*TQIPHR Trigger: TCTGTGCGGGATCTGTGTCAAGGAGGAAATGTTGTC...ACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAATCACTCCTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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| CDS-3UTR CAA 90 bp | GGGATTGATTTGAGTTGGATACGGTTTGAAGGATTAGGAATGGTTTTTACCGCAAAATCTGTTGACACATaGTTCATGCTTGAAGGCATT | + |
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Preference number: 5 (lower is better) Translates to: GIDLSWIRFEGLGMVFTAKSVDT*FMLEGI Trigger: AATGCCTTCAAGCATGAACAATGTGTCAACAGATTT...TGCGGTAAAAACCATTCCTAATCCTTCAAACCGTATCCAACTCAAATCAATCCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021997.8 |
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| CDS GCA 72 bp | GACACAGATCCCGCACAGAGCCCCAGGCTACGCTGCTaGCTGGACCAACCTTCTTGTCAGAGACAACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: DTDPAQSPRLRC*LDQPSCQRQLE Trigger: TTCCAGTTGTCTCTGACAAGAAGGTTGGTCCAGGCAGCAGCGTAGCCTGGGGCTCTGTGCGGGATCTGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225334.2 |
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