Pregenerated sensors for RSKR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037593Ensembl transcript IDs: ENSMUST00000046361.5, ENSMUST00000238934.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTaGACCCGAACTGAGAGGGGTTGTATGATAGGAAAGCGTAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: FGSSSESTGEVKAIA*TRTERGCMIGKRRG Trigger: GCCCCTACGCTTTCCTATCATACAACCCCTCTCAGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCAATGGTGGTACTGAGTaGTTTCTGGCTGAGTGCCTA | + |
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Preference number: 2 (lower is better) Translates to: FKKPLFGSSSESTGEVKANGGTE*FLAECL Trigger: TAGGCACTCAGCCAGAAACCACTCAGTACCACCATT...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCCTATCAGCTGCAGAATaGCAAAGATTAAACTCTAGC | + |
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Preference number: 2 (lower is better) Translates to: FKKPLFGSSSESTGEVKALSAAE*QRLNSS Trigger: GCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAG...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCGTTTTGGCTATCAGCTaGAGAATGCCAAAGATTAAA | + |
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Preference number: 2 (lower is better) Translates to: FKKPLFGSSSESTGEVKAVLAIS*RMPKIK Trigger: TTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAAC...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTCTTCCAGACCTGACCTaGTGGTCCCCATACCACACC | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTLPDLT*WSPYHT Trigger: GGTGTGGTATGGGGACCATCAGGTCAGGTCTGGAAG...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTATCTTCAGCTCCTGCTaGTCCCTAACAGGCCTCACG | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTIFSSC*SLTGLT Trigger: CGTGAGGCCTGTTAGGGAGCAGCAGGAGCTGAAGAT...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTAGGTGTTGTTTCCCCTaGCAGCTGTCCCCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTRCCFP*QLSPKL Trigger: CAGTTTGGGGGACAGCTGGCAGGGGAAACAACACCT...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTTCTGGGGCCATGTATTaGAGAGTGCCGCAGATAGTG | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTSGAMY*RVPQIV Trigger: CACTATCTGCGGCACTCTTCAATACATGGCCCCAGA...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTACGGGTGTGTTGTCCCTaGCGACAGCTTACTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVRVCCP*RQLTAP Trigger: GGGAGCAGTAAGCTGTCGGCAGGGACAACACACCCG...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTTGGCATAAGAGCTCATaGAGCAGGAGTGAGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTWHKSS*SRSESS Trigger: GGAGCTCTCACTCCTGCTCCATGAGCTCTTATGCCA...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTGGCCACTCAGACTaGGGCTTCTCTAGTAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: FGSSSESTGEVKAIALTRTGHSD*GFSSSS Trigger: ACTGCTACTAGAGAAGCCTCAGTCTGAGTGGCCAGT...TCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCAAGAGGCTGATGAACTaGGGCACTGGCCACTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: FKKPLFGSSSESTGEVKAKRLMN*GTGHSD Trigger: GTCTGAGTGGCCAGTGCCTCAGTTCATCAGCCTCTT...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTAGGGTGGACCTGGAAGTaGTGCAGGTATCGTAGACGA | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVGWTWK*CRYRRR Trigger: TCGTCTACGATACCTGCATCACTTCCAGGTCCACCC...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTAGCTCCCTGGGATAGGTaGCGAGACAGACCAAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVAPWDR*RDRPKS Trigger: AGACTTTGGTCTGTCTCGCCACCTATCCCAGGGAGC...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTAACCTCTTCTTTGCACTaGCTCAGCGTATCCCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVTSSLH*LSVSRC Trigger: ACAGCGGGATACGCTGAGGCAGTGCAAAGAAGAGGT...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAAGGTATCGTAGACGATaGAGAGGGTTCTGGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: FGSSSESTGEVKAIALTRRYRRR*RGFWHK Trigger: CTTATGCCAGAACCCTCTGCATCGTCTACGATACCT...TCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCGATGAACTGAGGCACTaGCCACTCAGACTGAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: FKKPLFGSSSESTGEVKADELRH*PLRLRL Trigger: AAGCCTCAGTCTGAGTGGCCAGTGCCTCAGTTCATC...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTCTGTGTACAAAAGGATaGTTGATCTGTCGCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTLCTKG*LICRWM Trigger: CATCCAGCGACAGATCAACCATCCTTTTGTACACAG...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATCGATGCAGAGGGTTCTaGCATAAGAGCTCATGGAGC | + |
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Preference number: 4 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDRCRGF*HKSSWS Trigger: GCTCCATGAGCTCTTATGCCAGAACCCTCTGCATCG...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTAGGACATGGACTCCAGTaGACTAGGCCAGGTATCTTG | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVGHGLQ*TRPGIL Trigger: CAAGATACCTGGCCTAGTCCACTGGAGTCCATGTCC...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTTCAATAGAGATGGAGTaGACCAAGGACTCCAGATCA | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTSIEME*TKDSRS Trigger: TGATCTGGAGTCCTTGGTCCACTCCATCTCTATTGA...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATAGGAGTGAGAGCTCCTaGTTAATAGACGCTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDRSESS*LIDAGI Trigger: GATCCCAGCGTCTATTAATCAGGAGCTCTCACTCCT...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCACAGTGGGCCACACTTaGCAACATAGCCACATGATC | + |
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Preference number: 4 (lower is better) Translates to: FKKPLFGSSSESTGEVKATVGHT*QHSHMI Trigger: GATCATGTGGCTATGTTGGCAAGTGTGGCCCACTGT...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATACAAAGTTCACTGGCTaGTTCTGTAGGAGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDTKFTG*FCRSSG Trigger: CCCTGAGCTCCTACAGAAGCAGCCAGTGAACTTTGT...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | GGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAACTGCAAATACAGCTTTCTaGGCACAATCTAGCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: GSSSESTGEVKAIALTRTANTAF*AQSSTF Trigger: GAAAGTGCTAGATTGTGCCCAGAAAGCTGTATTTGC...AGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATTAAACTCTAGCCCAGTACTCATGGAGCAGGAGTaGGAGCTCCTGATTAATAGA | + |
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Preference number: 4 (lower is better) Translates to: GQFWLSAAECQRLNSSPVLMEQE*ELLINR Trigger: TCTATTAATCAGGAGCTCTCACTCCTGCTCCATGAG...TACTGGGCTAGAGTTTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR TCA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGATATCTTGTTTCTCCATaGCAAAGTTCACTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: FGSSSESTGEVKAIALTRYLVSP*QSSLAA Trigger: AGCAGCCAGTGAACTTTGTCATGGAGAAACAAGATA...TCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGATGGAAACTTACCAGTTaGCAGAGAGAAAAGCAACAC | + |
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Preference number: 4 (lower is better) Translates to: FGSSSESTGEVKAIALTRWKLTS*QREKQH Trigger: GTGTTGCTTTTCTCTCTGGCAACTGGTAAGTTTCCA...TCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR GCA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATCACATGATCTCTCTCTaGAGCCACTGGAAACTTACC | + |
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Preference number: 4 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDHMISL*SHWKLT Trigger: GGTAAGTTTCCAGTGGCTGCAGAGAGAGATCATGTG...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| 3UTR CAA 72 bp | TCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTaGACCCGAACTGAGAGGGGTTGTATGATAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: SSESTGEVKAIA*TRTERGCMIGK Trigger: CTTTCCTATCATACAACCCCTCTCAGTTCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATCTCAGATTCACAGTaGGCCACACTTGCCAACATA | + |
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Preference number: 4 (lower is better) Translates to: FKKPLFGSSSESTGEVKAISDSQ*ATLANI Trigger: TATGTTGGCAAGTGTGGCCCACTGTGAATCTGAGAT...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCGTAGAACTTTTACTTTaGGCACCACCTTCACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: FKKPLFGSSSESTGEVKAVELLL*APPSLQ Trigger: TTGCAGTGAAGGTGGTGCCCAAAGTAAAAGTTCTAC...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CCA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATACGGATAGAATCCTCTaGAAACCAACCAACAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDTDRIL*KPTNSR Trigger: TCTACTGTTGGTTGGTTTCCAGAGGATTCTATCCGT...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS TCA 90 bp | GGCACTGATGCCTCTGTAGTCCCCATAGTTCTTCCAGACCTGACCTaGTGGTCCCCATACCACACCAGAGGCTCTTCCAGCCTTGGACCC | + |
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Preference number: 5 (lower is better) Translates to: GTDASVVPIVLPDLT*WSPYHTRGSSSLGP Trigger: GGGTCCAAGGCTGGAAGAGCCTCTGGTGTGGTATGGGGACCATCAGGTCAGGTCTGGAAGAACTATGGGGACTACAGAGGCATCAGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS TCA 90 bp | TCAGGGTCAAAGGCTACACCCCGAAAGAACGGGTGGACCTGGAAGTaGTGCAGGTATCGTAGACGATGCAGAGGGTTCTGGCATAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: SGSKATPRKNGWTWK*CRYRRRCRGFWHKS Trigger: GCTCTTATGCCAGAACCCTCTGCATCGTCTACGATACCTGCATCACTTCCAGGTCCACCCGTTCTTTCGGGGTGTAGCCTTTGACCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CAA 90 bp | TTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCATTGCCTTGACCCGAAGACACCCGGGTGTGTaGTCCCTGCCGACAGCTTAC | + |
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Preference number: 5 (lower is better) Translates to: FGSSSESTGEVKAIALTRRHPGV*SLPTAY Trigger: GTAAGCTGTCGGCAGGGACAACACACCCGGGTGTCT...TCGGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS TCA 90 bp | GGGATCTCAGATTCACAGTGGGCCACACTTGCCAACATAGCCACATaGTCTCTCTCTGCAGCCACTGGAAACTTACCAGTTGCCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: GISDSQWATLANIAT*SLSAATGNLPVARE Trigger: CTCTCTGGCAACTGGTAAGTTTCCAGTGGCTGCAGAGAGAGATCATGTGGCTATGTTGGCAAGTGTGGCCCACTGTGAATCTGAGATCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS TCA 90 bp | AGAGGGTTCTGGCATAAGAGCTCATGGAGCAGGAGTGAGAGCTCCTaGTTAATAGACGCTGGGATCTCAGATTCACAGTGGGCCACACTT | + |
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Preference number: 5 (lower is better) Translates to: RGFWHKSSWSRSESS*LIDAGISDSQWATL Trigger: AAGTGTGGCCCACTGTGAATCTGAGATCCCAGCGTCTATTAATCAGGAGCTCTCACTCCTGCTCCATGAGCTCTTATGCCAGAACCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS GCA 90 bp | GGACTAGGCCAGGTATCTTGTTTCTCCATGACAAAGTTCACTGGCTaGTTCTGTAGGAGCTCAGGGTCAAAGGCTACACCCCGAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: GLGQVSCFSMTKFTG*FCRSSGSKATPRKN Trigger: GTTCTTTCGGGGTGTAGCCTTTGACCCTGAGCTCCTACAGAAGCAGCCAGTGAACTTTGTCATGGAGAAACAAGATACCTGGCCTAGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS GCA 90 bp | AAAGGATGGTTGATCTGTCGCTGGATGCTAACCTCTTCTTTGCACTaGCTCAGCGTATCCCGCTGTAGAACTTTTACTTTGGGCACCACC | + |
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Preference number: 5 (lower is better) Translates to: KGWLICRWMLTSSLH*LSVSRCRTFTLGTT Trigger: GGTGGTGCCCAAAGTAAAAGTTCTACAGCGGGATACGCTGAGGCAGTGCAAAGAAGAGGTTAGCATCCAGCGACAGATCAACCATCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CCA 90 bp | CAGTACAAGGACCAGTTCAGCTGCAAAGAGACGGATAGAATCCTCTaGAAACCAACCAACAGTAGACCACAGGGAGTAGAGATCCATGCT | + |
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Preference number: 5 (lower is better) Translates to: QYKDQFSCKETDRIL*KPTNSRPQGVEIHA Trigger: AGCATGGATCTCTACTCCCTGTGGTCTACTGTTGGTTGGTTTCCAGAGGATTCTATCCGTCTCTTTGCAGCTGAACTGGTCCTTGTACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CCA 90 bp | GGACTCCAGATCATAGTCAAAGTCCTCGAAGGACATGGACTCCAGTaGACTAGGCCAGGTATCTTGTTTCTCCATGACAAAGTTCACTGG | + |
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Preference number: 5 (lower is better) Translates to: GLQIIVKVLEGHGLQ*TRPGILFLHDKVHW Trigger: CCAGTGAACTTTGTCATGGAGAAACAAGATACCTGGCCTAGTCCACTGGAGTCCATGTCCTTCGAGGACTTTGACTATGATCTGGAGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS TCA 90 bp | CTCGTTCATCCAGCAGGATATTCTCCATCTTTACATCACGGTGGATaGTACCCAAGTCGTGGAGATAGCACAGTACAAGGACCAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: LVHPAGYSPSLHHGG*YPSRGDSTVQGPVQ Trigger: CTGAACTGGTCCTTGTACTGTGCTATCTCCACGACTTGGGTATCATCCACCGTGATGTAAAGATGGAGAATATCCTGCTGGATGAACGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS GCA 90 bp | GATACCCAAGTCGTGGAGATAGCACAGTACAAGGACCAGTTCAGCTaGAAAGAGACGGATAGAATCCTCTGGAAACCAACCAACAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: DTQVVEIAQYKDQFS*KETDRILWKPTNSR Trigger: TCTACTGTTGGTTGGTTTCCAGAGGATTCTATCCGTCTCTTTGCAGCTGAACTGGTCCTTGTACTGTGCTATCTCCACGACTTGGGTATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS-3UTR CAA 90 bp | ATGATAGGAAAGCGTAGGGGCAGTTTTGGCTATCAGCTGCAGAATGCCAAAGATATGCTAACCTCTTCTTaGCACTGCCTCAGCGTATCC | + |
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Preference number: 5 (lower is better) Translates to: MIGKRRGSFGYQLQNAKDMLTSS*HCLSVS Trigger: GGATACGCTGAGGCAGTGCAAAGAAGAGGTTAGCAT...ATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCCATAATAAAGAGGTGTaGTTTCCCCTGCCAGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: FKKPLFGSSSESTGEVKAHNKEV*FPLPAV Trigger: GACAGCTGGCAGGGGAAACAACACCTCTTTATTATG...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCTGTAGAACTTTTACTTaGGGCACCACCTTCACTGCA | + |
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Preference number: 5 (lower is better) Translates to: FKKPLFGSSSESTGEVKACRTFT*GTTFTA Trigger: TGCAGTGAAGGTGGTGCCCAAAGTAAAAGTTCTACA...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGAAGCCTTTGTTTGGCAGCTCAAGTGAAAGTACTGGAGAAGTGAAGGCCTGTACAAAAGGATGGTaGATCTGTCGCTGGATGCTA | + |
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Preference number: 5 (lower is better) Translates to: FKKPLFGSSSESTGEVKACTKGW*ICRWML Trigger: TAGCATCCAGCGACAGATCAACCATCCTTTTGTACA...GGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS CCA 90 bp | AGAACTTTTACTTTGGGCACCACCTTCACTGCAAATACAGCTTTCTaGGCACAATCTAGCACTTTCAGGACAGTTCCAAACGAACCTTTA | + |
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Preference number: 5 (lower is better) Translates to: RTFTLGTTFTANTAF*AQSSTFRTVPNEPL Trigger: TAAAGGTTCGTTTGGAACTGTCCTGAAAGTGCTAGATTGTGCCCAGAAAGCTGTATTTGCAGTGAAGGTGGTGCCCAAAGTAAAAGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS TCA 72 bp | GCCTCTGTAGTCCCCATAGTTCTTCCAGACCTGACCTaGTGGTCCCCATACCACACCAGAGGCTCTTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: ASVVPIVLPDLT*WSPYHTRGSSS Trigger: GCTGGAAGAGCCTCTGGTGTGGTATGGGGACCATCAGGTCAGGTCTGGAAGAACTATGGGGACTACAGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS TCA 72 bp | AAGGCTACACCCCGAAAGAACGGGTGGACCTGGAAGTaGTGCAGGTATCGTAGACGATGCAGAGGGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: KATPRKNGWTWK*CRYRRRCRGFW Trigger: CCAGAACCCTCTGCATCGTCTACGATACCTGCATCACTTCCAGGTCCACCCGTTCTTTCGGGGTGTAGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS GCA 72 bp | CCTTTAGCCACAAGGCCTAAAATCTTCAGCTCCTGCTaGTCCCTAACAGGCCTCACGGGAAACTCTGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: PLATRPKIFSSC*SLTGLTGNSGR Trigger: TCTACCAGAGTTTCCCGTGAGGCCTGTTAGGGAGCAGCAGGAGCTGAAGATTTTAGGCCTTGTGGCTAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS TCA 72 bp | TGGCATAAGAGCTCATGGAGCAGGAGTGAGAGCTCCTaGTTAATAGACGCTGGGATCTCAGATTCACAGTGG | + |
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Preference number: 6 (lower is better) Translates to: WHKSSWSRSESS*LIDAGISDSQW Trigger: CCACTGTGAATCTGAGATCCCAGCGTCTATTAATCAGGAGCTCTCACTCCTGCTCCATGAGCTCTTATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS GCA 72 bp | GTCGTGGAGATAGCACAGTACAAGGACCAGTTCAGCTaGAAAGAGACGGATAGAATCCTCTGGAAACCAACC | + |
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Preference number: 6 (lower is better) Translates to: VVEIAQYKDQFS*KETDRILWKPT Trigger: GGTTGGTTTCCAGAGGATTCTATCCGTCTCTTTGCAGCTGAACTGGTCCTTGTACTGTGCTATCTCCACGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CCA 72 bp | ACTGCCTCAGCGTATCCCGCTGTAGAACTTTTACTTTaGGCACCACCTTCACTGCAAATACAGCTTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: TASAYPAVELLL*APPSLQIQLSG Trigger: CCCAGAAAGCTGTATTTGCAGTGAAGGTGGTGCCCAAAGTAAAAGTTCTACAGCGGGATACGCTGAGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CAA 72 bp | TTCCCTACCAACTTTAGCTTCTCTCTCACCCATGTATaGAAGAGTGCCGCAGATAGTGTAGGCTCGTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FPTNFSFSLTHV*KSAADSVGSCS Trigger: GGAGCACGAGCCTACACTATCTGCGGCACTCTTCAATACATGGGTGAGAGAGAAGCTAAAGTTGGTAGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046361.5 |
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| CDS CAA 72 bp | GAAGGACATGGACTCCAGTGGACTAGGCCAGGTATCTaGTTTCTCCATGACAAAGTTCACTGGCTGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: EGHGLQWTRPGI*FLHDKVHWLLL Trigger: CAGAAGCAGCCAGTGAACTTTGTCATGGAGAAACAAGATACCTGGCCTAGTCCACTGGAGTCCATGTCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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| CDS GCA 72 bp | TTGATCTGTCGCTGGATGCTAACCTCTTCTTTGCACTaGCTCAGCGTATCCCGCTGTAGAACTTTTACTTTG | + |
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Preference number: 6 (lower is better) Translates to: LICRWMLTSSLH*LSVSRCRTFTL Trigger: CAAAGTAAAAGTTCTACAGCGGGATACGCTGAGGCAGTGCAAAGAAGAGGTTAGCATCCAGCGACAGATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CCA 72 bp | ACTTTGGGCACCACCTTCACTGCAAATACAGCTTTCTaGGCACAATCTAGCACTTTCAGGACAGTTCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: TLGTTFTANTAF*AQSSTFRTVPN Trigger: GTTTGGAACTGTCCTGAAAGTGCTAGATTGTGCCCAGAAAGCTGTATTTGCAGTGAAGGTGGTGCCCAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046361.5 ENSMUST00000238934.2 |
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| CDS CCA 72 bp | ATCATAGTCAAAGTCCTCGAAGGACATGGACTCCAGTaGACTAGGCCAGGTATCTTGTTTCTCCATGACAAA | + |
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Preference number: 6 (lower is better) Translates to: IIVKVLEGHGLQ*TRPGILFLHDK Trigger: TTTGTCATGGAGAAACAAGATACCTGGCCTAGTCCACTGGAGTCCATGTCCTTCGAGGACTTTGACTATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238934.2 |
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