Pregenerated sensors for RSAD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039096Ensembl transcript IDs: ENSMUST00000040487.4
Found 134 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGAGGACATCCTAGGCAGGGAACACTTGCTGACCTGTGACTCCTaGGATGCTGTGAGGGATACCAGTCCCCAGAACAGAGGCAGCCGT | + |
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Preference number: 1 (lower is better) Translates to: GEDILGREHLLTCDS*DAVRDTSPQNRGSR Trigger: ACGGCTGCCTCTGTTCTGGGGACTGGTATCCCTCACAGCATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR TCA 90 bp | TCTGGTACACGAAGAGGTGAAAAGAAGGTGCCGGATCCCCTGGAATaGGAGTTACTGATGGTTGTGAGCTGCCACATGGCTGCTGGGACT | + |
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Preference number: 1 (lower is better) Translates to: SGTRRGEKKVPDPLE*ELLMVVSCHMAAGT Trigger: AGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCTCATTCCAGGGGATCCGGCACCTTCTTTTCACCTCTTCGTGTACCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR TCA 90 bp | CCTGATAGGGTTGGGGATTTAGATAGTGGTGTTTGCCTCAGCGCATaGAGTCCAGAACCACAGAAAAATGGGTGTGGTGGTGCATGCCCG | + |
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Preference number: 1 (lower is better) Translates to: PDRVGDLDSGVCLSA*SPEPQKNGCGGACP Trigger: CGGGCATGCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCACTATCTAAATCCCCAACCCTATCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 90 bp | TCCCCTGGAATGAGAGTTACTGATGGTTGTGAGCTGCCACATGGCTaGTGGGACTTGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAG | + |
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Preference number: 1 (lower is better) Translates to: SPGMRVTDGCELPHG*WDLNPGSLEEQTTK Trigger: CTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCTCATTCCAGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 90 bp | CCTGGAATGAGAGTTACTGATGGTTGTGAGCTGCCACATGGCTGCTaGGACTTGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAGCCA | + |
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Preference number: 1 (lower is better) Translates to: PGMRVTDGCELPHGC*DLNPGSLEEQTTKP Trigger: TGGCTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCTCATTCCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 90 bp | CGCGCGCGCGCGCACACACACACACACACACACTTTAATAAAATGTaGGCAGTATTGGTGCAAGCCTTTAATCCCTACATTCGGAAGGCA | + |
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Preference number: 1 (lower is better) Translates to: RARAHTHTHTHFNKM*AVLVQAFNPYIRKA Trigger: TGCCTTCCGAATGTAGGGATTAAAGGCTTGCACCAATACTGCCCACATTTTATTAAAGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 90 bp | TGGTCTCAAGCCAAGATAATGAACTCCTTAATTTCAAAGGAAAGATaGAGCTGTGCACTATTACCCTCGGGGCTGGAGAGATGGCTCAAC | + |
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Preference number: 1 (lower is better) Translates to: WSQAKIMNSLISKER*SCALLPSGLERWLN Trigger: GTTGAGCCATCTCTCCAGCCCCGAGGGTAATAGTGCACAGCTGCATCTTTCCTTTGAAATTAAGGAGTTCATTATCTTGGCTTGAGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 90 bp | AGCCAAGATAATGAACTCCTTAATTTCAAAGGAAAGATGCAGCTGTaGACTATTACCCTCGGGGCTGGAGAGATGGCTCAACAGTTAAGG | + |
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Preference number: 1 (lower is better) Translates to: SQDNELLNFKGKMQL*TITLGAGEMAQQLR Trigger: CCTTAACTGTTGAGCCATCTCTCCAGCCCCGAGGGTAATAGTGCACAGCTGCATCTTTCCTTTGAAATTAAGGAGTTCATTATCTTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 90 bp | CGCACACACACACACACACACACTTTAATAAAATGTGGGCAGTATTaGTGCAAGCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCA | + |
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Preference number: 1 (lower is better) Translates to: RTHTHTHTLIKCGQY*CKPLIPTFGRQRKA Trigger: TGCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGCTTGCACCAATACTGCCCACATTTTATTAAAGTGTGTGTGTGTGTGTGTGTGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 90 bp | AGTCACTGGTCAAATGATTATCAGGCGATGGGACATTTGGTCTCATaGTCTCAAGCCAAGATAATGAACTCCTTAATTTCAAAGGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: SHWSNDYQAMGHLVS*SQAKIMNSLISKER Trigger: TCTTTCCTTTGAAATTAAGGAGTTCATTATCTTGGCTTGAGACCATGAGACCAAATGTCCCATCGCCTGATAATCATTTGACCAGTGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | GCCCGTGATCTCAGCACTCGGGAGGCAGAAGCAGGGGGTCCGATGCTAAACACTGTGGGAGTGGGGTGGTaGGGACATCCTAGGCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: ARDLSTREAEAGGPMLNTVGVGW*GHPRQG Trigger: TCCCTGCCTAGGATGTCCTCACCACCCCACTCCCAC...AGTGTTTAGCATCGGACCCCCTGCTTCTGCCTCCCGAGTGCTGAGATCACGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAGAAGCAGGGGGTCCGATGCTAAACACTGTCCTCAGCCACACAGTGAGTTTAGCCGTCCATCCAACTaGCCACATCCATTCCCATGG | + |
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Preference number: 2 (lower is better) Translates to: GRSRGSDAKHCPQPHSEFSRPSN*PHPFPW Trigger: CCATGGGAATGGATGTGGTCAGTTGGATGGACGGCT...AAACTCACTGTGTGGCTGAGGACAGTGTTTAGCATCGGACCCCCTGCTTCTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGGACCCACATTCAATAACCAGCACCCACATTGTGGCTCACAACCATCCGCAGCAGGGAACACTTGCTaGCCTGTGACTCCTGGGATG | + |
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Preference number: 2 (lower is better) Translates to: RGPTFNNQHPHCGSQPSAAGNTC*PVTPGM Trigger: CATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGC...TGCGGATGGTTGTGAGCCACAATGTGGGTGCTGGTTATTGAATGTGGGTCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | CAGTGTACAGTAGCGGGAACATTCAAGCCCCAGTGTCATAGACACACAGACAACGCCTGGTCTACAGTGTaGGCTCCAGGACCAAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: QCTVAGTFKPQCHRHTDNAWSTV*APGPRP Trigger: TGGCCTTGGTCCTGGAGCTCACACTGTAGACCAGGC...GTTGTCTGTGTGTCTATGACACTGGGGCTTGAATGTTCCCGCTACTGTACACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | GTACCACAGACACACAGGCACAGCGGCACAGTGTACAGTAGCGGGAACATTCAACCGGATCCCCTGGAATaGGAGTTACTGATGGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: VPQTHRHSGTVYSSGNIQPDPLE*ELLMVV Trigger: CACAACCATCAGTAACTCTCATTCCAGGGGATCCGG...TTGAATGTTCCCGCTACTGTACACTGTGCCGCTGTGCCTGTGTGTCTGTGGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | AGGTCTATTCGATGGGATGAGCCTGTTACAGGGTTAGGAATTTACAGGTTTGAGGGTGGTGCATGCCCGTaGTCTCAGCACTCGGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: RSIRWDEPVTGLGIYRFEGGACP*SQHSGG Trigger: GCCTCCCGAGTGCTGAGATCACGGGCATGCACCACC...CTCAAACCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | GGCAGAAGCAGGGGGTCCGATGCTAAACACTGTCCTCAGCCACACAGTGAGTTTCAGAGGACCAGAGTGTaGTGCTCAGAAAAGATGGCT | + |
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Preference number: 2 (lower is better) Translates to: GRSRGSDAKHCPQPHSEFQRTRV*CSEKMA Trigger: AGCCATCTTTTCTGAGCACCACACTCTGGTCCTCTG...AAACTCACTGTGTGGCTGAGGACAGTGTTTAGCATCGGACCCCCTGCTTCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR GCA 90 bp | CAGTGTACAGTAGCGGGAACATTCAAGCCCCAGTGTCATAGACACACAGACAACCTGATGGTTGTGAGCTaGCACATGGCTGCTGGGACT | + |
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Preference number: 2 (lower is better) Translates to: QCTVAGTFKPQCHRHTDNLMVVS*HMAAGT Trigger: AGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAG...GTTGTCTGTGTGTCTATGACACTGGGGCTTGAATGTTCCCGCTACTGTACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CAA 90 bp | ATGAGAGTTACTGATGGTTGTGAGCTGCCACATGGCTGCTGGGACTaGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAGCCATCTCTC | + |
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Preference number: 2 (lower is better) Translates to: MRVTDGCELPHGCWD*NPGSLEEQTTKPSL Trigger: GAGAGATGGCTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR GCA 90 bp | TGGTGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGAGGACCAGAGTGTGGTaGTCAGAAAAGATGGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: WCLPQRMKSRTTEKWVWWRTRVW*SEKMAH Trigger: GTGAGCCATCTTTTCTGAGCACCACACTCTGGTCCT...CCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | GCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCAAGCAGATCTCTGAGTTCCAGATGCCCACCATCTaGCCCAGCCCTCTAAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: AFNPYIRKAKKGKQISEFQMPTI*PSPLSP Trigger: TGGACTTAGAGGGCTGGGCCAGATGGTGGGCATCTG...GAACTCAGAGATCTGCTTGCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGGACCCACATTCAATAACCAGCACCCACATTGTGGCTCACAACCATCCGCAGGCTTCTCTCTAGAATaGGGCTTCTCTGATAGATAC | + |
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Preference number: 2 (lower is better) Translates to: RGPTFNNQHPHCGSQPSAGFSLE*GFSDRY Trigger: GTATCTATCAGAGAAGCCTCATTCTAGAGAGAAGCC...TGCGGATGGTTGTGAGCCACAATGTGGGTGCTGGTTATTGAATGTGGGTCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTATTCGATGGGATGAGCCTGTTACAGGGTTAGGAATTTACAGGTTTGAGCTGACCTGTGACTCCTaGGATGCTGTGAGGGATACC | + |
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Preference number: 2 (lower is better) Translates to: RSIRWDEPVTGLGIYRFELTCDS*DAVRDT Trigger: GGTATCCCTCACAGCATCCCAGGAGTCACAGGTCAG...CTCAAACCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | TGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGTGCAAATGTGGGCAGTATTaGTGCAAGCCTTTAATCCCT | + |
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Preference number: 2 (lower is better) Translates to: CLPQRMKSRTTEKWVWWCKCGQY*CKPLIP Trigger: AGGGATTAAAGGCTTGCACCAATACTGCCCACATTT...GCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | CTGGCAGAGGACCCACATTCAATAACCAGCACCCACATTGTGGCTCACAACCATAGTGTTTTGCCTAGATaGATATCTATGCACCACACA | + |
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Preference number: 2 (lower is better) Translates to: LAEDPHSITSTHIVAHNHSVLPR*ISMHHT Trigger: TGTGTGGTGCATAGATATTCATCTAGGCAAAACACT...ATGGTTGTGAGCCACAATGTGGGTGCTGGTTATTGAATGTGGGTCCTCTGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | TATCAGGCGATGGGACATTTGGTCTCATGGTCTCAAGCCAAGATAATGAACTCCTTAAGGGCACTTATTTaGTCTGGCAGAGGACCCACA | + |
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Preference number: 2 (lower is better) Translates to: YQAMGHLVSWSQAKIMNSLRALI*SGRGPT Trigger: TGTGGGTCCTCTGCCAGATCAAATAAGTGCCCTTAA...GGAGTTCATTATCTTGGCTTGAGACCATGAGACCAAATGTCCCATCGCCTGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | TCAATAACCAGCACCCACATTGTGGCTCACAACCATCCGCAAGCCCAGTTCCAGCTCCAGCCCTTCAAATaGTTTTGTAAACATCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: SITSTHIVAHNHPQAQFQLQPFK*FCKHLV Trigger: AACAAGATGTTTACAAAACCATTTGAAGGGCTGGAG...CTGGAACTGGGCTTGCGGATGGTTGTGAGCCACAATGTGGGTGCTGGTTATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTATTCGATGGGATGAGCCTGTTACAGGGTTAGGAATTTACAGGTTTGAGACAGAAAAATGGGTGTaGTGGTGCATGCCCGTGATC | + |
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Preference number: 2 (lower is better) Translates to: RSIRWDEPVTGLGIYRFETEKWV*WCMPVI Trigger: GATCACGGGCATGCACCACCACACCCATTTTTCTGT...CTCAAACCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR TCA 90 bp | TTTGGGAAAGAATCACTAGTAGGTGCTAAAGTCACTGGTCAAATGATTATCAGGACACTTGCTGACCTGTaGCTCCTGGGATGCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: FGKESLVGAKVTGQMIIRTLADL*LLGCCE Trigger: CTCACAGCATCCCAGGAGTCACAGGTCAGCAAGTGT...CCTGATAATCATTTGACCAGTGACTTTAGCACCTACTAGTGATTCTTTCCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGAAAGAATCACTAGTAGGTGCTAAAGTCACTGGTCAAATGATTATCAGGGGTGCTCAGAAAAGATaGCTCACATTCATTCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: FGKESLVGAKVTGQMIIRGAQKR*LTFIPL Trigger: CAGAGGAATGAATGTGAGCCATCTTTTCTGAGCACC...CCTGATAATCATTTGACCAGTGACTTTAGCACCTACTAGTGATTCTTTCCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | GTGTCAGAGCCAAGCAATAGCACCTCAGAGCAGAGATaGCACCTACCGGCAGATGCCCACCATCTGGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: VSEPSNSTSEQR*HLPADAHHLAQ Trigger: CTGGGCCAGATGGTGGGCATCTGCCGGTAGGTGCCATCTCTGCTCTGAGGTGCTATTGCTTGGCTCTGACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR TCA 72 bp | ACCAGTCCCCAGAACAGAGGCAGCCGTCCATCCAACTaGCCACATCCATTCCCATGGGGGTGTCAGAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: TSPQNRGSRPSN*PHPFPWGCQSQ Trigger: TTGGCTCTGACACCCCCATGGGAATGGATGTGGTCAGTTGGATGGACGGCTGCCTCTGTTCTGGGGACTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | TGTAACTCTGTCTCCAGAAGATACAACACTCTACTCTaGCCTCCATGGCTGCACGCACACACGCGCGCGCGC | + |
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Preference number: 3 (lower is better) Translates to: CNSVSRRYNTLL*PPWLHAHTRAR Trigger: GCGCGCGCGCGTGTGTGCGTGCAGCCATGGAGGCCAGAGTAGAGTGTTGTATCTTCTGGAGACAGAGTTACA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | CGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTaGTGCATGCCCGTGATCTCAGCACTCGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: RMKSRTTEKWVW*CMPVISALGRQ Trigger: CTGCCTCCCGAGTGCTGAGATCACGGGCATGCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CAA 90 bp | CTTAGCAGGAGAGAGTGCTCCCTGCTCTTCCAGAGGACCAGAGTGTGGTGCTCACATGGCTGCTGGGACTaGAACCCTGGTTCTCTAGAA | + |
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Preference number: 3 (lower is better) Translates to: LSRRECSLLFQRTRVWCSHGCWD*NPGSLE Trigger: TTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATG...TGAGCACCACACTCTGGTCCTCTGGAAGAGCAGGGAGCACTCTCTCCTGCTAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | ATCCTAGGCAGGGAACACTTGCTGACCTGTGACTCCTaGGATGCTGTGAGGGATACCAGTCCCCAGAACAGA | + |
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Preference number: 3 (lower is better) Translates to: ILGREHLLTCDS*DAVRDTSPQNR Trigger: TCTGTTCTGGGGACTGGTATCCCTCACAGCATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR TCA 72 bp | AGATCTCTGAGTTCTAGACAAGCCTGGTCTACAGTGTaGGCTCCAGGACCAAGGCCACACAGAGAGACCCCA | + |
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Preference number: 3 (lower is better) Translates to: RSLSSRQAWSTV*APGPRPHRETP Trigger: TGGGGTCTCTCTGTGTGGCCTTGGTCCTGGAGCTCACACTGTAGACCAGGCTTGTCTAGAACTCAGAGATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 72 bp | GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGTCTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: GWRDGSVVKSTV*SSRGPEFNSQH Trigger: GTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 72 bp | AGCTGGAGAAATAGCTTAGCAGGAGAGAGTGCTCCCTaGTCTTCCAGAGGACCAGAGTGTGGTGCTCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: SWRNSLAGESAP*SSRGPECGAQK Trigger: TTTCTGAGCACCACACTCTGGTCCTCTGGAAGAGCAGGGAGCACTCTCTCCTGCTAAGCTATTTCTCCAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 72 bp | GGCTGGAGAGATGGCTCAGCAGATAAGAGCACAGGGTaGTCTTCCATAGGTCCTGAGTTCAATTCCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GWRDGSADKSTG*SSIGPEFNSQQ Trigger: TTGCTGGGAATTGAACTCAGGACCTATGGAAGAGCACCCTGTGCTCTTATCTGCTGAGCCATCTCTCCAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR TCA 72 bp | TCTATGCACCACACAGGTGTCTGGTACACGAAGAGGTaGAAAGAAGGTGCCGGATCCCCTGGAATGAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: SMHHTGVWYTKR*KEGAGSPGMRV Trigger: AACTCTCATTCCAGGGGATCCGGCACCTTCTTTTCACCTCTTCGTGTACCAGACACCTGTGTGGTGCATAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 72 bp | GAGTGCTCCCTGCTCTTCCAGAGGACCAGAGTGTGGTaGTCAGAAAAGATGGCTCACATTCATTCCTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: ECSLLFQRTRVW*SEKMAHIHSSV Trigger: TACAGAGGAATGAATGTGAGCCATCTTTTCTGAGCACCACACTCTGGTCCTCTGGAAGAGCAGGGAGCACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | AGAGTTACTGATGGTTGTGAGCTGCCACATGGCTGCTaGGACTTGAACCCTGGTTCTCTAGAAGAGCAAACC | + |
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Preference number: 3 (lower is better) Translates to: RVTDGCELPHGC*DLNPGSLEEQT Trigger: GGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | CAAGCCCAGTTCCAGGGGATCCAACAGGCACACGCATaGTGTGCACATTCAAAGGCATGCACACAAAATACT | + |
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Preference number: 3 (lower is better) Translates to: QAQFQGIQQAHA*CAHSKACTQNT Trigger: AGTATTTTGTGTGCATGCCTTTGAATGTGCACACCATGCGTGTGCCTGTTGGATCCCCTGGAACTGGGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CAA 90 bp | CTAGATGAATATCTATGCACCACACAGGTGTCTGGTACACGAAGAGGTGAAAAGCTAGGCAGGGAACACTaGCTGACCTGTGACTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: LDEYLCTTQVSGTRRGEKLGREH*LTCDSW Trigger: CCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAG...CTTTTCACCTCTTCGTGTACCAGACACCTGTGTGGTGCATAGATATTCATCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR GCA 72 bp | ATGAGAGTTACTGATGGTTGTGAGCTGCCACATGGCTaGTGGGACTTGAACCCTGGTTCTCTAGAAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: MRVTDGCELPHG*WDLNPGSLEEQ Trigger: TTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGTAACTCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR CCA 72 bp | CCGTCCAGGGAGTCTGACAACCTAAGGTCTATTCGATaGGATGAGCCTGTTACAGGGTTAGGAATTTACAGG | + |
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Preference number: 3 (lower is better) Translates to: PSRESDNLRSIR*DEPVTGLGIYR Trigger: CCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCTTAGGTTGTCAGACTCCCTGGACGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| 3UTR-3UTR CAA 90 bp | GTACCACAGACACACAGGCACAGCGGCACAGTGTACAGTAGCGGGAACATTCAAATAAAATACCTAAGTTaGAGGCTGGAGAGATGGCTC | + |
|
Preference number: 3 (lower is better) Translates to: VPQTHRHSGTVYSSGNIQIKYLS*RLERWL Trigger: GAGCCATCTCTCCAGCCTCAAACTTAGGTATTTTAT...TTGAATGTTCCCGCTACTGTACACTGTGCCGCTGTGCCTGTGTGTCTGTGGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR TCA 72 bp | GTTGGGGATTTAGATAGTGGTGTTTGCCTCAGCGCATaGAGTCCAGAACCACAGAAAAATGGGTGTGGTGGT | + |
|
Preference number: 3 (lower is better) Translates to: VGDLDSGVCLSA*SPEPQKNGCGG Trigger: ACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCACTATCTAAATCCCCAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR GCA 72 bp | CCAGTTCCAGGGGATCCAACAGGCACACGCATGGTGTaGACATTCAAAGGCATGCACACAAAATACTTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: PVPGDPTGTRMV*TFKGMHTKYLN Trigger: ATTTAAGTATTTTGTGTGCATGCCTTTGAATGTGCACACCATGCGTGTGCCTGTTGGATCCCCTGGAACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR-3UTR CAA 90 bp | TGGTGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGCCCTGTAGAAAGATTTaGTGTTATTTGGTGTCCAAA | + |
|
Preference number: 3 (lower is better) Translates to: WCLPQRMKSRTTEKWVWWPCRKI*CYLVSK Trigger: TTTGGACACCAAATAACACAAAATCTTTCTACAGGG...CCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR GCA 72 bp | AATGAACTCCTTAATTTCAAAGGAAAGATGCAGCTGTaGACTATTACCCTCGGGGCTGGAGAGATGGCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: NELLNFKGKMQL*TITLGAGEMAQ Trigger: TTGAGCCATCTCTCCAGCCCCGAGGGTAATAGTGCACAGCTGCATCTTTCCTTTGAAATTAAGGAGTTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR TCA 72 bp | AAAGGTCTTGCGTTATCAGGAAGAAATATGTCCCTCTaGAGAGCAAGGACACATCTAGTTGAGACATACCCA | + |
|
Preference number: 3 (lower is better) Translates to: KGLALSGRNMSL*RARTHLVETYP Trigger: TGGGTATGTCTCAACTAGATGTGTCCTTGCTCTTCAGAGGGACATATTTCTTCCTGATAACGCAAGACCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CCA 72 bp | GCGCACACACACACACACACACACTTTAATAAAATGTaGGCAGTATTGGTGCAAGCCTTTAATCCCTACATT | + |
|
Preference number: 3 (lower is better) Translates to: AHTHTHTHFNKM*AVLVQAFNPYI Trigger: AATGTAGGGATTAAAGGCTTGCACCAATACTGCCCACATTTTATTAAAGTGTGTGTGTGTGTGTGTGTGCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR GCA 72 bp | CACACACACACTTTAATAAAATGTGGGCAGTATTGGTaGAAGCCTTTAATCCCTACATTCGGAAGGCAAAGA | + |
|
Preference number: 3 (lower is better) Translates to: HTHTLIKCGQYW*KPLIPTFGRQR Trigger: TCTTTGCCTTCCGAATGTAGGGATTAAAGGCTTGCACCAATACTGCCCACATTTTATTAAAGTGTGTGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CCA 72 bp | ACACACACACACACTTTAATAAAATGTGGGCAGTATTaGTGCAAGCCTTTAATCCCTACATTCGGAAGGCAA | + |
|
Preference number: 3 (lower is better) Translates to: THTHTLIKCGQY*CKPLIPTFGRQ Trigger: TTGCCTTCCGAATGTAGGGATTAAAGGCTTGCACCAATACTGCCCACATTTTATTAAAGTGTGTGTGTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CCA 72 bp | TCAAATGATTATCAGGCGATGGGACATTTGGTCTCATaGTCTCAAGCCAAGATAATGAACTCCTTAATTTCA | + |
|
Preference number: 3 (lower is better) Translates to: SNDYQAMGHLVS*SQAKIMNSLIS Trigger: TGAAATTAAGGAGTTCATTATCTTGGCTTGAGACCATGAGACCAAATGTCCCATCGCCTGATAATCATTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR TCA 72 bp | AACCACATGGTTGCTCACAACCATTTATATATAATCTaGTGTCCTCTTCTGTCATGCAGGCATATATACAAA | + |
|
Preference number: 3 (lower is better) Translates to: NHMVAHNHLYII*CPLLSCRHIYK Trigger: TTTGTATATATGCCTGCATGACAGAAGAGGACATCAGATTATATATAAATGGTTGTGAGCAACCATGTGGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | GCCCGTGATCTCAGCACTCGGGAGGCAGAAGCAGGGGGTCCGATGCTAAACACTAGCAGCAGCAGACCCTaGGCTAGCAGCTCCTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: ARDLSTREAEAGGPMLNTSSSRP*ASSSST Trigger: GGTGGAGGAGCTGCTAGCTCAGGGTCTGCTGCTGCT...AGTGTTTAGCATCGGACCCCCTGCTTCTGCCTCCCGAGTGCTGAGATCACGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | GGGTGGGAGTGGGGTGGTGAGGACATCCTAGGCAGGGAACACTTGCTGACCTGTCCACAGTGTGGGGACTaGCCAGACTCGGGGTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: GWEWGGEDILGREHLLTCPQCGD*PDSGFL Trigger: GAGGAACCCCGAGTCTGGCCAGTCCCCACACTGTGG...ACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACCACCCCACTCCCACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | GCCCGTGATCTCAGCACTCGGGAGGCAGAAGCAGGGGGTCCGATGCTAAACACTGGCACAAATCTTCCATaGGCTCCAGGCCCAATGCCA | + |
|
Preference number: 4 (lower is better) Translates to: ARDLSTREAEAGGPMLNTGTNLP*APGPMP Trigger: TGGCATTGGGCCTGGAGCCCATGGAAGATTTGTGCC...AGTGTTTAGCATCGGACCCCCTGCTTCTGCCTCCCGAGTGCTGAGATCACGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | CTTAGCAGGAGAGAGTGCTCCCTGCTCTTCCAGAGGACCAGAGTGTGGTGCTCATCCCACAGGGTCAGCTaGGGCTCAAACTGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LSRRECSLLFQRTRVWCSSHRVS*GSNCCQ Trigger: CTGGCAGCAGTTTGAGCCCCAGCTGACCCTGTGGGA...TGAGCACCACACTCTGGTCCTCTGGAAGAGCAGGGAGCACTCTCTCCTGCTAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | GGGTGGGAGTGGGGTGGTGAGGACATCCTAGGCAGGGAACACTTGCTGACCTGTTGCTGCCAGTGCTGGTaGGTGACTCCAACATCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: GWEWGGEDILGREHLLTCCCQCW*VTPTSV Trigger: TACTGATGTTGGAGTCACTCACCAGCACTGGCAGCA...ACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACCACCCCACTCCCACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | CTTAGCAGGAGAGAGTGCTCCCTGCTCTTCCAGAGGACCAGAGTGTGGTGCTCATCTGGCTCCAGTGTCTaGATCCGTGCTTCCCGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: LSRRECSLLFQRTRVWCSSGSSV*IRASRV Trigger: TACCCGGGAAGCACGGATCCAGACACTGGAGCCAGA...TGAGCACCACACTCTGGTCCTCTGGAAGAGCAGGGAGCACTCTCTCCTGCTAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CAA 72 bp | GAGTGGGGTGGTGAGGACATCCTAGGCAGGGAACACTaGCTGACCTGTGACTCCTGGGATGCTGTGAGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: EWGGEDILGREH*LTCDSWDAVRD Trigger: ATCCCTCACAGCATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACCACCCCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | GCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCAAGCAGATCTCTGAGTTCCTCTCTGCACCCCGCTaGGCCGCAGCAGCGTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: AFNPYIRKAKKGKQISEFLSAPR*AAAASL Trigger: CAAGGACGCTGCTGCGGCTCAGCGGGGTGCAGAGAG...GAACTCAGAGATCTGCTTGCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | GTCCTCAGCCACACAGTGAGTTTGCAGTGTCGGGTACATATGGCACTGTCTCAGCCGCAGCAGCGTCCTTaGCTCAGTCACCAGGCAATT | + |
|
Preference number: 4 (lower is better) Translates to: VLSHTVSLQCRVHMALSQPQQRP*LSHQAI Trigger: AATTGCCTGGTGACTGAGGCAAGGACGCTGCTGCGG...CTGAGACAGTGCCATATGTACCCGACACTGCAAACTCACTGTGTGGCTGAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | TGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGTGCGGGAGGGTACCCTGCTaGACCTGGGCAAAGAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: CLPQRMKSRTTEKWVWWCGRVPC*TWAKSE Trigger: CTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCC...GCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | TGGTGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGGTACCCTGCTGCACCTaGGCAAAGAGTGAGGTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: WCLPQRMKSRTTEKWVWWVPCCT*AKSEVP Trigger: GGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTAC...CCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | GCCCGTGATCTCAGCACTCGGGAGGCAGAAGCAGGGGGTCCGATGCTAAACACTTTGGAGACCTCATATTaGCGAAAGCCAGCATCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: ARDLSTREAEAGGPMLNTLETSY*RKPASR Trigger: TCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAA...AGTGTTTAGCATCGGACCCCCTGCTTCTGCCTCCCGAGTGCTGAGATCACGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | GGTGGTGAGGACATCCTAGGCAGGGAACACTTGCTGACCTGTGACTCCTGGGATGGGGGATGTACTTATTaGAGTTGCAGTAGCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GGEDILGREHLLTCDSWDGGCTY*SCSSCS Trigger: GCTGCAGCTACTGCAACTTCAATAAGTACATCCCCC...ATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | AGAGGACCCACATTCAATAACCAGCACCCACATTGTGGCTCACAACCATCCGCACCAATGCCAAGGTACTaGCCGCACTGCCAGTACGTC | + |
|
Preference number: 4 (lower is better) Translates to: RGPTFNNQHPHCGSQPSAPMPRY*PHCQYV Trigger: GACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGG...TGCGGATGGTTGTGAGCCACAATGTGGGTGCTGGTTATTGAATGTGGGTCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | GGCTGCTGGGACTTGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAGCCATCTCTCCACCTCCTTGCTTaGTCCAAACACGTCCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: GCWDLNPGSLEEQTTKPSLHLLA*SKHVPQ Trigger: CTGTGGGACGTGTTTGGAGCAAGCAAGGAGGTGGAG...AGATGGCTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CAA 72 bp | CCGATGCTAAACACTGTCCTCAGCCACACAGTGAGTTaGCAGTGTCGGGTACATATGGCACTGTCTCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: PMLNTVLSHTVS*QCRVHMALSQG Trigger: CCCCTGAGACAGTGCCATATGTACCCGACACTGCAAACTCACTGTGTGGCTGAGGACAGTGTTTAGCATCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | TGGTGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGCAGTACGTCCAGTTATaGGTACTGAGCGCCCCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: WCLPQRMKSRTTEKWVWWQYVQL*VLSAPF Trigger: GAACGGGGCGCTCAGTACCCATAACTGGACGTACTG...CCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CAA 72 bp | ACTGATGGTTGTGAGCTGCCACATGGCTGCTGGGACTaGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAG | + |
|
Preference number: 4 (lower is better) Translates to: TDGCELPHGCWD*NPGSLEEQTTK Trigger: CTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGTGGCAGCTCACAACCATCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR GCA 90 bp | GCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCAAGCAGATCTCTGAGTTCCAGTGTCTGGATCCGTaGTTCCCGGGTATGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: AFNPYIRKAKKGKQISEFQCLDP*FPGMAS Trigger: GGAGGCCATACCCGGGAAGCACGGATCCAGACACTG...GAACTCAGAGATCTGCTTGCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | AGGTCTATTCGATGGGATGAGCCTGTTACAGGGTTAGGAATTTACAGGTTTGAGACAGCAGCCACAGTGTaGGGACTGGCCAGACTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: RSIRWDEPVTGLGIYRFETAATV*GLARLG Trigger: CCCGAGTCTGGCCAGTCCCCACACTGTGGCTGCTGT...CTCAAACCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR TCA 90 bp | AGGTCTATTCGATGGGATGAGCCTGTTACAGGGTTAGGAATTTACAGGTTTGAGCACTTCCGGGTGCCATaGCCAAAGAGCGTCACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RSIRWDEPVTGLGIYRFEHFRVP*PKSVTS Trigger: AGAGGTGACGCTCTTTGGTCATGGCACCCGGAAGTG...CTCAAACCTGTAAATTCCTAACCCTGTAACAGGCTCATCCCATCGAATAGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | CTAGATGAATATCTATGCACCACACAGGTGTCTGGTACACGAAGAGGTGAAAAGACTGTCCTGCCCTCCTaGTACATCTCAGCAGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LDEYLCTTQVSGTRRGEKTVLPS*YISAAR Trigger: CCTGGCTGCTGAGATGTACCAGGAGGGCAGGACAGT...CTTTTCACCTCTTCGTGTACCAGACACCTGTGTGGTGCATAGATATTCATCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | ACATGGCTGCTGGGACTTGAACCCTGGTTCTCTAGAAGAGCAAACCACCAAGCCCGTTCCGTGCAAAATTaGAGACCTCATATTGGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: TWLLGLEPWFSRRANHQARSVQN*RPHIGE Trigger: TTCGCCAATATGAGGTCTCCAATTTTGCACGGAACG...GGCTTGGTGGTTTGCTCTTCTAGAGAACCAGGGTTCAAGTCCCAGCAGCCATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | TTTGGGAAAGAATCACTAGTAGGTGCTAAAGTCACTGGTCAAATGATTATCAGGACAGACTCTACTCTCTaGACCCCGCTGAGCCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FGKESLVGAKVTGQMIIRTDSTL*TPLSRS Trigger: GCTGCGGCTCAGCGGGGTGCAGAGAGTAGAGTCTGT...CCTGATAATCATTTGACCAGTGACTTTAGCACCTACTAGTGATTCTTTCCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | CTAGATGAATATCTATGCACCACACAGGTGTCTGGTACACGAAGAGGTGAAAAGCAACCTGTTCACTCCTaGTGCTCCAAAAGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LDEYLCTTQVSGTRRGEKQPVHS*CSKSCQ Trigger: CTGGCAGCTTTTGGAGCAGCAGGAGTGAACAGGTTG...CTTTTCACCTCTTCGTGTACCAGACACCTGTGTGGTGCATAGATATTCATCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR GCA 90 bp | TTTGGGAAAGAATCACTAGTAGGTGCTAAAGTCACTGGTCAAATGATTATCAGGGGGCTCCAGGCCCAATaGCAAGGTACTGACCGCACT | + |
|
Preference number: 4 (lower is better) Translates to: FGKESLVGAKVTGQMIIRGLQAQ*QGTDRT Trigger: AGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCC...CCTGATAATCATTTGACCAGTGACTTTAGCACCTACTAGTGATTCTTTCCCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS-3UTR CCA 90 bp | TGGGCAGTATTGGTGCAAGCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCTTTCATCCAATTGTCTaGCTCCAGTGTCTGGATCCG | + |
|
Preference number: 4 (lower is better) Translates to: WAVLVQAFNPYIRKAKKGFHPIV*LQCLDP Trigger: CGGATCCAGACACTGGAGCCAGACAATTGGATGAAA...GCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGCTTGCACCAATACTGCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| 3UTR CAA 72 bp | AGTCACTGGTCAAATGATTATCAGGCGATGGGACATTaGGTCTCATGGTCTCAAGCCAAGATAATGAACTCC | + |
|
Preference number: 4 (lower is better) Translates to: SHWSNDYQAMGH*VSWSQAKIMNS Trigger: GGAGTTCATTATCTTGGCTTGAGACCATGAGACCAAATGTCCCATCGCCTGATAATCATTTGACCAGTGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS TCA 90 bp | CGGGTCAGGGGCCGGGAGGGTACCCTGCTGCACCTGGGCAAAGAGTaGGGTGCCCCGTTCCAGGGTCAGCTGGTAGAGGGAGAGGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: RVRGREGTLLHLGKE*GAPFQGQLVEGEVV Trigger: GACCACCTCTCCCTCTACCAGCTGACCCTGGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCCCCTGACCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS GCA 90 bp | TACATCTCAGCAGCCAGGTCCGGGTCAGGGGCCGGGAGGGTACCCTaGTGCACCTGGGCAAAGAGTGAGGTGCCCCGTTCCAGGGTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: YISAARSGSGAGRVP*CTWAKSEVPRSRVS Trigger: GCTGACCCTGGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCCCCTGACCCGGACCTGGCTGCTGAGATGTA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS GCA 90 bp | CACAGACTCTACTCTCTGCACCCCGCTGAGCCGCAGCAGCGTCCTTaGCTCAGTCACCAGGCAATTCCGCACGGTCCCCTCCTCCACGCC | + |
|
Preference number: 5 (lower is better) Translates to: HRLYSLHPAEPQQRP*LSHQAIPHGPLLHA Trigger: GGCGTGGAGGAGGGGACCGTGCGGAATTGCCTGGTGACTGAGGCAAGGACGCTGCTGCGGCTCAGCGGGGTGCAGAGAGTAGAGTCTGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS GCA 90 bp | AGCGTTTCTCGCAATAAGGCCAGTGCACGTAAAGCGCCGCACGCGTaGTCGCGGACTCAGGACTCGGAGGCTGTCCCAAGCTGTCCACAC | + |
|
Preference number: 5 (lower is better) Translates to: SVSRNKASARKAPHA*SRTQDSEAVPSCPH Trigger: GTGTGGACAGCTTGGGACAGCCTCCGAGTCCTGAGTCCGCGAGCACGCGTGCGGCGCTTTACGTGCACTGGCCTTATTGCGAGAAACGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS TCA 90 bp | CCTGACACGGGTGAGGAAGGCCTGTGCTGCCAGGCCTCTTGGAGTTaGGGTAGGAGGGTCAATAACAGGGAGTCCAGCACAGCTAGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: PDTGEEGLCCQASWS*GRRVNNRESSTARP Trigger: GGGCCTAGCTGTGCTGGACTCCCTGTTATTGACCCTCCTACCTCAACTCCAAGAGGCCTGGCAGCACAGGCCTTCCTCACCCGTGTCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS GCA 90 bp | TGGAGACCTCATATTGGCGAAAGCCAGCATCTCGAAGGACTGTCCTaGCCTCCTGGTACATCTCAGCAGCCAGGTCCGGGTCAGGGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: WRPHIGESQHLEGLS*PPGTSQQPGPGQGP Trigger: CGGCCCCTGACCCGGACCTGGCTGCTGAGATGTACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS CCA 90 bp | TCATATTGGCGAAAGCCAGCATCTCGAAGGACTGTCCTGCCCTCCTaGTACATCTCAGCAGCCAGGTCCGGGTCAGGGGCCGGGAGGGTA | + |
|
Preference number: 5 (lower is better) Translates to: SYWRKPASRRTVLPS*YISAARSGSGAGRV Trigger: TACCCTCCCGGCCCCTGACCCGGACCTGGCTGCTGAGATGTACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS TCA 90 bp | TGGGGCACAAATCTTCCATGGGCTCCAGGCCCAATGCCAAGGTACTaGCCGCACTGCCAGTACGTCCAGTTATGGGTACTGAGCGCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: WGTNLPWAPGPMPRY*PHCQYVQLWVLSAP Trigger: CGGGGCGCTCAGTACCCATAACTGGACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCCATGGAAGATTTGTGCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
||
| CDS GCA 90 bp | CCACCTTCTGTGCCGGTAACCCCAGCATCAAATCCACCGACACTCTaGCAGGGAAAAGGAGCCGGGCTTCCGCCAGAGTCCGTAAAGCGT | + |
|
Preference number: 5 (lower is better) Translates to: PPSVPVTPASNPPTL*QGKGAGLPPESVKR Trigger: ACGCTTTACGGACTCTGGCGGAAGCCCGGCTCCTTTTCCCTGGCAGAGTGTCGGTGGATTTGATGCTGGGGTTACCGGCACAGAAGGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 90 bp | TCCAGTGTCTGGATCCGTGCTTCCCGGGTATGGCCTCCAGTTCCCTaGGGCACAAATCTTCCATGGGCTCCAGGCCCAATGCCAAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: SSVWIRASRVWPPVP*GTNLPWAPGPMPRY Trigger: GTACCTTGGCATTGGGCCTGGAGCCCATGGAAGATTTGTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 90 bp | ATCCAATTGTCTGGCTCCAGTGTCTGGATCCGTGCTTCCCGGGTATaGCCTCCAGTTCCCTGGGGCACAAATCTTCCATGGGCTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: IQLSGSSVWIRASRV*PPVPWGTNLPWAPG Trigger: GCCTGGAGCCCATGGAAGATTTGTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 90 bp | CTCCAGTTCCCTGGGGCACAAATCTTCCATGGGCTCCAGGCCCAATaGCAAGGTACTGACCGCACTGCCAGTACGTCCAGTTATGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: LQFPGAQIFHGLQAQ*QGTDRTASTSSYGY Trigger: GTACCCATAACTGGACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCCATGGAAGATTTGTGCCCCAGGGAACTGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 90 bp | CCAAAGAGCGTCACCTCTTTCATCCAATTGTCTGGCTCCAGTGTCTaGATCCGTGCTTCCCGGGTATGGCCTCCAGTTCCCTGGGGCACA | + |
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Preference number: 5 (lower is better) Translates to: PKSVTSFIQLSGSSV*IRASRVWPPVPWGT Trigger: TGTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAAGAGGTGACGCTCTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 90 bp | CCGGGTGCCATGACCAAAGAGCGTCACCTCTTTCATCCAATTGTCTaGCTCCAGTGTCTGGATCCGTGCTTCCCGGGTATGGCCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: PGAMTKERHLFHPIV*LQCLDPCFPGMASS Trigger: ACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAAGAGGTGACGCTCTTTGGTCATGGCACCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 90 bp | AATTCCGCACGGTCCCCTCCTCCACGCCGCGGGGGATGTACTTATTaGAGTTGCAGTAGCTGCAGCGTTTCTCGCAATAAGGCCAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: NSARSPPPRRGGCTY*SCSSCSVSRNKASA Trigger: TGCACTGGCCTTATTGCGAGAAACGCTGCAGCTACTGCAACTTCAATAAGTACATCCCCCGCGGCGTGGAGGAGGGGACCGTGCGGAATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 90 bp | CGTCACCTCTTTCATCCAATTGTCTGGCTCCAGTGTCTGGATCCGTaGTTCCCGGGTATGGCCTCCAGTTCCCTGGGGCACAAATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RHLFHPIVWLQCLDP*FPGMASSSLGHKSS Trigger: GGAAGATTTGTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAAGAGGTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 90 bp | TGGGTACTGAGCGCCCCGTTCCGTGCAAAATTGGAGACCTCATATTaGCGAAAGCCAGCATCTCGAAGGACTGTCCTGCCCTCCTGGTAC | + |
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Preference number: 5 (lower is better) Translates to: WVLSAPFRAKLETSY*RKPASRRTVLPSWY Trigger: GTACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAACGGGGCGCTCAGTACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | TGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGTGCGCCGCAGCAGCGTCCTaGCCTCAGTCACCAGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: CLPQRMKSRTTEKWVWWCAAAAS*PQSPGN Trigger: ATTGCCTGGTGACTGAGGCAAGGACGCTGCTGCGGC...GCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | GGTGGTGAGGACATCCTAGGCAGGGAACACTTGCTGACCTGTGACTCCTGGGATCAGTTTCTGAAGCTGTaGAAGCCACGGCTCCACCTT | + |
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Preference number: 5 (lower is better) Translates to: GGEDILGREHLLTCDSWDQFLKL*KPRLHL Trigger: AAGGTGGAGCCGTGGCTTCAACAGCTTCAGAAACTG...ATCCCAGGAGTCACAGGTCAGCAAGTGTTCCCTGCCTAGGATGTCCTCACCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 90 bp | TCTAGCAGTTCCAGCTTTCCCAGGCGAACGCACTTCCGGGTGCCATaGCCAAAGAGCGTCACCTCTTTCATCCAATTGTCTGGCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SSSSSFPRRTHFRVP*PKSVTSFIQLSGSS Trigger: ACTGGAGCCAGACAATTGGATGAAAGAGGTGACGCTCTTTGGTCATGGCACCCGGAAGTGCGTTCGCCTGGGAAAGCTGGAACTGCTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | TGTTTGCCTCAGCGCATGAAGTCCAGAACCACAGAAAAATGGGTGTGGTGGTGCAGCTCCTCCACCTCCTaGCTTGCTCCAAACACGTCC | + |
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Preference number: 5 (lower is better) Translates to: CLPQRMKSRTTEKWVWWCSSSTS*LAPNTS Trigger: GGACGTGTTTGGAGCAAGCAAGGAGGTGGAGGAGCT...GCACCACCACACCCATTTTTCTGTGGTTCTGGACTTCATGCGCTGAGGCAAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | GGCAGAAGCAGGGGGTCCGATGCTAAACACTGTCCTCAGCCACACAGTGAGTTTATTGGAGACCTCATATaGGCGAAAGCCAGCATCTCG | + |
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Preference number: 5 (lower is better) Translates to: GRSRGSDAKHCPQPHSEFIGDLI*AKASIS Trigger: CGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAAT...AAACTCACTGTGTGGCTGAGGACAGTGTTTAGCATCGGACCCCCTGCTTCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | CAGTGTACAGTAGCGGGAACATTCAAGCCCCAGTGTCATAGACACACAGACAACCCGTTCCGTGCAAAATaGGAGACCTCATATTGGCGA | + |
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Preference number: 5 (lower is better) Translates to: QCTVAGTFKPQCHRHTDNPFRAK*ETSYWR Trigger: TCGCCAATATGAGGTCTCCAATTTTGCACGGAACGG...GTTGTCTGTGTGTCTATGACACTGGGGCTTGAATGTTCCCGCTACTGTACACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS-3UTR CAA 90 bp | GCCTTTAATCCCTACATTCGGAAGGCAAAGAAAGGCAAGCAGATCTCTGAGTTCACCTCTTTCATCCAATaGTCTGGCTCCAGTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: AFNPYIRKAKKGKQISEFTSFIQ*SGSSVW Trigger: CCAGACACTGGAGCCAGACAATTGGATGAAAGAGGT...GAACTCAGAGATCTGCTTGCCTTTCTTTGCCTTCCGAATGTAGGGATTAAAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | GCAGCCAGGTCCGGGTCAGGGGCCGGGAGGGTACCCTaGTGCACCTGGGCAAAGAGTGAGGTGCCCCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AARSGSGAGRVP*CTWAKSEVPRS Trigger: GGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCCCCTGACCCGGACCTGGCTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 72 bp | TCCGGGTCAGGGGCCGGGAGGGTACCCTGCTGCACCTaGGCAAAGAGTGAGGTGCCCCGTTCCAGGGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SGSGAGRVPCCT*AKSEVPRSRVS Trigger: GCTGACCCTGGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCCCCTGACCCGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | GCTTCCGCCAGAGTCCGTAAAGCGTCGCTGGCTGAGTaGGTCCGGCCCAGCAGCTGCAGCTCCGCGTCATCC | + |
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Preference number: 6 (lower is better) Translates to: ASARVRKASLAE*VRPSSCSSASS Trigger: GGATGACGCGGAGCTGCAGCTGCTGGGCCGGACTCACTCAGCCAGCGACGCTTTACGGACTCTGGCGGAAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | GGCCGGGAGGGTACCCTGCTGCACCTGGGCAAAGAGTaGGGTGCCCCGTTCCAGGGTCAGCTGGTAGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: GREGTLLHLGKE*GAPFQGQLVEG Trigger: TCCCTCTACCAGCTGACCCTGGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | CGCAATAAGGCCAGTGCACGTAAAGCGCCGCACGCGTaGTCGCGGACTCAGGACTCGGAGGCTGTCCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: RNKASARKAPHA*SRTQDSEAVPS Trigger: GCTTGGGACAGCCTCCGAGTCCTGAGTCCGCGAGCACGCGTGCGGCGCTTTACGTGCACTGGCCTTATTGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | TACTCTCTGCACCCCGCTGAGCCGCAGCAGCGTCCTTaGCTCAGTCACCAGGCAATTCCGCACGGTCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: YSLHPAEPQQRP*LSHQAIPHGPL Trigger: GAGGGGACCGTGCGGAATTGCCTGGTGACTGAGGCAAGGACGCTGCTGCGGCTCAGCGGGGTGCAGAGAGTA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | GGAGGGTACCCTGCTGCACCTGGGCAAAGAGTGAGGTaGCCCGTTCCAGGGTCAGCTGGTAGAGGGAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: GGYPAAPGQRVR*PVPGSAGRGRG Trigger: ACCTCTCCCTCTACCAGCTGACCCTGGAACGGGGCACCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 72 bp | CGAAAGCCAGCATCTCGAAGGACTGTCCTGCCCTCCTaGTACATCTCAGCAGCCAGGTCCGGGTCAGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RKPASRRTVLPS*YISAARSGSGA Trigger: GGCCCCTGACCCGGACCTGGCTGCTGAGATGTACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | GTGCCGGTAACCCCAGCATCAAATCCACCGACACTCTaGCAGGGAAAAGGAGCCGGGCTTCCGCCAGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: VPVTPASNPPTL*QGKGAGLPPES Trigger: GGACTCTGGCGGAAGCCCGGCTCCTTTTCCCTGGCAGAGTGTCGGTGGATTTGATGCTGGGGTTACCGGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | AGGGTCAGCTGGGGCTCAAACTGCTGCCAGTGCTGGTaGGTGACTCCAACATCAGTACGCAGCCCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: RVSWGSNCCQCW*VTPTSVRSPIA Trigger: GGCTATGGGGCTGCGTACTGATGTTGGAGTCACTCACCAGCACTGGCAGCAGTTTGAGCCCCAGCTGACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | CCTGGGGCACAAATCTTCCATGGGCTCCAGGCCCAATaGCAAGGTACTGACCGCACTGCCAGTACGTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: PGAQIFHGLQAQ*QGTDRTASTSS Trigger: ACTGGACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCCATGGAAGATTTGTGCCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | GGTGAGGAAGGCCTGTGCTGCCAGGCCTCTTGGAGTTaGGGTAGGAGGGTCAATAACAGGGAGTCCAGCACA | + |
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Preference number: 6 (lower is better) Translates to: GEEGLCCQASWS*GRRVNNRESST Trigger: TGTGCTGGACTCCCTGTTATTGACCCTCCTACCTCAACTCCAAGAGGCCTGGCAGCACAGGCCTTCCTCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | CATATTGGCGAAAGCCAGCATCTCGAAGGACTGTCCTaGCCTCCTGGTACATCTCAGCAGCCAGGTCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: HIGESQHLEGLS*PPGTSQQPGPG Trigger: ACCCGGACCTGGCTGCTGAGATGTACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS GCA 72 bp | TTTCATCCAATTGTCTGGCTCCAGTGTCTGGATCCGTaGTTCCCGGGTATGGCCTCCAGTTCCCTGGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: FHPIVWLQCLDP*FPGMASSSLGH Trigger: GTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | CGGTCCCCTCCTCCACGCCGCGGGGGATGTACTTATTaGAGTTGCAGTAGCTGCAGCGTTTCTCGCAATAAG | + |
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Preference number: 6 (lower is better) Translates to: RSPPPRRGGCTY*SCSSCSVSRNK Trigger: CTTATTGCGAGAAACGCTGCAGCTACTGCAACTTCAATAAGTACATCCCCCGCGGCGTGGAGGAGGGGACCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 72 bp | AGCGCCCCGTTCCGTGCAAAATTGGAGACCTCATATTaGCGAAAGCCAGCATCTCGAAGGACTGTCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: SAPFRAKLETSY*RKPASRRTVLP Trigger: GGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAACGGGGCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 72 bp | GTCACCTCTTTCATCCAATTGTCTGGCTCCAGTGTCTaGATCCGTGCTTCCCGGGTATGGCCTCCAGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: VTSFIQLSGSSV*IRASRVWPPVP Trigger: GGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAAGAGGTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CAA 72 bp | GAGCGCCCCGTTCCGTGCAAAATTGGAGACCTCATATaGGCGAAAGCCAGCATCTCGAAGGACTGTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ERPVPCKIGDLI*AKASISKDCPA Trigger: GGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAACGGGGCGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CAA 90 bp | ATGGGTACTGAGCGCCCCGTTCCGTGCAAAATTGGAGACCTCATATaGGCGAAAGCCAGCATCTCGAAGGACTGTCCTGCCCTCCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: MGTERPVPCKIGDLI*AKASISKDCPALLV Trigger: TACCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAACGGGGCGCTCAGTACCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | ACTGACCGCACTGCCAGTACGTCCAGTTATGGGTACTaGGCGCCCCGTTCCGTGCAAAATTGGAGACCTCAT | + |
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Preference number: 6 (lower is better) Translates to: TDRTASTSSYGY*APRSVQNWRPH Trigger: ATGAGGTCTCCAATTTTGCACGGAACGGGGCGCTCAGTACCCATAACTGGACGTACTGGCAGTGCGGTCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | AATCTTCCATGGGCTCCAGGCCCAATGCCAAGGTACTaGCCGCACTGCCAGTACGTCCAGTTATGGGTACTG | + |
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Preference number: 6 (lower is better) Translates to: NLPWAPGPMPRY*PHCQYVQLWVL Trigger: CAGTACCCATAACTGGACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCCATGGAAGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS TCA 72 bp | TCCAGCTTTCCCAGGCGAACGCACTTCCGGGTGCCATaGCCAAAGAGCGTCACCTCTTTCATCCAATTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SSFPRRTHFRVP*PKSVTSFIQLS Trigger: AGACAATTGGATGAAAGAGGTGACGCTCTTTGGTCATGGCACCCGGAAGTGCGTTCGCCTGGGAAAGCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CCA 72 bp | ATGACCAAAGAGCGTCACCTCTTTCATCCAATTGTCTaGCTCCAGTGTCTGGATCCGTGCTTCCCGGGTATG | + |
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Preference number: 6 (lower is better) Translates to: MTKERHLFHPIV*LQCLDPCFPGM Trigger: CATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGACAATTGGATGAAAGAGGTGACGCTCTTTGGTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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| CDS CAA 72 bp | CAGTTATGGGTACTGAGCGCCCCGTTCCGTGCAAAATaGGAGACCTCATATTGGCGAAAGCCAGCATCTCGA | + |
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Preference number: 6 (lower is better) Translates to: QLWVLSAPFRAK*ETSYWRKPASR Trigger: TCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAACGGGGCGCTCAGTACCCATAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040487.4 |
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