Pregenerated sensors for RS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031293Ensembl transcript IDs: ENSMUST00000033650.14, ENSMUST00000112368.3
Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTACTGATTGGCAGACAAGCTCTAGGCATCATCCTGTCTCTGCCTaGCTCCTAGTCCTGGATTTGCAGGTGTGCCCCTCCATGCCTGGT | + |
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Preference number: 1 (lower is better) Translates to: CTDWQTSSRHHPVSA*LLVLDLQVCPSMPG Trigger: ACCAGGCATGGAGGGGCACACCTGCAAATCCAGGACTAGGAGGCAGGCAGAGACAGGATGATGCCTAGAGCTTGTCTGCCAATCAGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 90 bp | TCTTTCGGGCAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATaGTGTACTTCTTCCAACAAGGCCACACCTACTCCAACAAAGCCA | + |
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Preference number: 1 (lower is better) Translates to: SFGQRGGGCQSPLPQ*CTSSNKATPTPTKP Trigger: TGGCTTTGTTGGAGTAGGTGTGGCCTTGTTGGAAGAAGTACATCATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTGCCCGAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | AGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAATCTCAGAACCTaGGAGGCAGAGACAGAAGGATCTTTGCAAGTTCCAGGCCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: RERPGVVANTQNLRT*EAETEGSLQVPGQP Trigger: AGGCTGGCCTGGAACTTGCAAAGATCCTTCTGTCTCTGCCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 90 bp | GCAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTaGTCCAAAGGTAGCCAGAATACTGTCTTTCGGGCAGCGAGGAGG | + |
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Preference number: 1 (lower is better) Translates to: AGRHGAGEGAKSSIS*SKGSQNTVFRAARR Trigger: CCTCCTCGCTGCCCGAAAGACAGTATTCTGGCTACCTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR GCA 90 bp | GCCTGCCCCTTGCATTCATCTCCAGGCAATCACAGAAGGACACATTaGCAAAAGGGCTGTAGAATGGAGTTTCTGCACAAGGAGCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: ACPLHSSPGNHRRTH*QKGCRMEFLHKELH Trigger: GTGGAGCTCCTTGTGCAGAAACTCCATTCTACAGCCCTTTTGGCAATGTGTCCTTCTGTGATTGCCTGGAGATGAATGCAAGGGGCAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | GACTACCGAAAGAAGTTTCAAATGTCATGTCTGAGTAAGCATGTTTaGGTGGGCAGGACGGGAGGAAGCCGCTCGGAGAGAAGGCTTTTG | + |
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Preference number: 1 (lower is better) Translates to: DYRKKFQMSCLSKHV*VGRTGGSRSERRLL Trigger: CAAAAGCCTTCTCTCCGAGCGGCTTCCTCCCGTCCTGCCCACCCAAACATGCTTACTCAGACATGACATTTGAAACTTCTTTCGGTAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 90 bp | GCTGGGAGAACCTTAACTAGGCACCTCTGCCATTTGCCCCAGGTTTaGAACCTACCAGTGTATGTGTATGTGTGCATGTTGGACAGAGGT | + |
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Preference number: 1 (lower is better) Translates to: AGRTLTRHLCHLPQV*NLPVYVYVCMLDRG Trigger: ACCTCTGTCCAACATGCACACATACACATACACTGGTAGGTTTCAAACCTGGGGCAAATGGCAGAGGTGCCTAGTTAAGGTTCTCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 90 bp | ACTCCAGTTAACAGCCTCTCCCAGAGAAGAGCCTCAAACCCAGCTTaGGCTACAGATGGAAATGAGCTAGAGACCAGTAGTCATTCTCTC | + |
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Preference number: 1 (lower is better) Translates to: TPVNSLSQRRASNPA*ATDGNELETSSHSL Trigger: GAGAGAATGACTACTGGTCTCTAGCTCATTTCCATCTGTAGCTCAAGCTGGGTTTGAGGCTCTTCTCTGGGAGAGGCTGTTAACTGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 90 bp | AATAGCTCAGAGAAAAGTACTAACCAAGGCTGTATTGTGTGTGTGTaGGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCT | + |
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Preference number: 1 (lower is better) Translates to: NSSEKSTNQGCIVCV*GQDLVSGQFSFSAS Trigger: AGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTCACACACACACAATACAGCCTTGGTTAGTACTTTTCTCTGAGCTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | TTAAAATTTGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTaGCAAATACCCAGAATCTCAGAACCTGGGAGGCAGAGACAGAAG | + |
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Preference number: 1 (lower is better) Translates to: LKFGICCASEKGQVW*QIPRISEPGRQRQK Trigger: CTTCTGTCTCTGCCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | TCATTAAAATTTGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTaGTGGCAAATACCCAGAATCTCAGAACCTGGGAGGCAGAGACAG | + |
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Preference number: 1 (lower is better) Translates to: SLKFGICCASEKGQV*WQIPRISEPGRQRQ Trigger: CTGTCTCTGCCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR GCA 90 bp | AAGGAAACCGGAAGGTTGGACTTCATTAAAATTTGGTATTTGTTGTaGTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAATCTC | + |
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Preference number: 1 (lower is better) Translates to: KETGRLDFIKIWYLL*FRERPGVVANTQNL Trigger: GAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGAAGTCCAACCTTCCGGTTTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | AGAGATATGGTTTATCTCAGCTGTTTTCTAAGCCTGTTCAATTTCTaGGAAACTGTAGCCATGGATAAAGAAGGTGTGATGTATTCTAGT | + |
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Preference number: 1 (lower is better) Translates to: RDMVYLSCFLSLFNF*ETVAMDKEGVMYSS Trigger: ACTAGAATACATCACACCTTCTTTATCCATGGCTACAGTTTCCCAGAAATTGAACAGGCTTAGAAAACAGCTGAGATAAACCATATCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 90 bp | TACCAGGAATATTGTTGTACATTGCCACACATACACACACACCTGTaGAACTCCAAAATACTAGGTAGGAAATTTGATGCTATTAAAATG | + |
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Preference number: 1 (lower is better) Translates to: YQEYCCTLPHIHTHL*NSKILGRKFDAIKM Trigger: CATTTTAATAGCATCAAATTTCCTACCTAGTATTTTGGAGTTCCACAGGTGTGTGTGTATGTGTGGCAATGTACAACAATATTCCTGGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCAGAAGCCCAACCCCCTaGGCTGAAGAGTTTCGGGGT | + |
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Preference number: 2 (lower is better) Translates to: RPRPCLWAVLILSFSPHARSPTP*AEEFRG Trigger: ACCCCGAAACTCTTCAGCCCAGGGGGTTGGGCTTCT...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCGCATCATCCTGTCTCTaGCTGCCTCCTAGTCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: RPRPCLWAVLILSFSPHAASSCL*LPPSPG Trigger: TCCAGGACTAGGAGGCAGGCAGAGACAGGATGATGC...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCCTGAGTAAGCATGTTTaGGTGGGCAGGACGGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: RPRPCLWAVLILSFSPHALSKHV*VGRTGG Trigger: TCCTCCCGTCCTGCCCACCCAAACATGCTTACTCAG...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | GAGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCAACAGAGGAACCAGATaGAGCAACCAGGAGGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: EAKTLSLGSSHSQLLPACNRGTR*SNQEAQ Trigger: TTGGGCCTCCTGGTTGCTGCATCTGGTTCCTCTGTT...GCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | AGGGTGACCAAAATAGTTGGATTATATAGGGAAGAAGCCCAACCCCCTGGGCTGGTAGGGGGCGGGGTATaGCAACTAGGAGGACCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RVTKIVGLYREEAQPPGLVGGGV*QLGGPG Trigger: ACCAGGTCCTCCTAGTTGGCATACCCCGCCCCCTAC...CAGCCCAGGGGGTTGGGCTTCTTCCCTATATAATCCAACTATTTTGGTCACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGGGACCTGGTAGGGGCTaGGAGATGCTGGGAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: QADMVLEKEPRVLYLDPKGPGRG*EMLGEP Trigger: AGGTTCTCCCAGCATCTCTCAGCCCCTACCAGGTCC...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 90 bp | CTACATAGCCTTGGCTGGTCTGGAGCTTGCTATGCAAACCTGGCCTaGAACTCACAGAGATCCACCTGTCTGTGTTTTCCCAGTGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: LHSLGWSGACYANLA*NSQRSTCLCFPSAR Trigger: CCTAGCACTGGGAAAACACAGACAGGTGGATCTCTGTGAGTTCAAGGCCAGGTTTGCATAGCAAGCTCCAGACCAGCCAAGGCTATGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | TCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTTGACCCTCACCAGCAAGCCCTTTACTaGCAGATCATCTGTGTACAG | + |
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Preference number: 2 (lower is better) Translates to: SLGSSHSQLLPACLFDPHQQALY*QIICVQ Trigger: CTGTACACAGATGATCTGTCAGTAAAGGGCTTGCTG...GTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCATTCCTGCCAGAGAATaGCTACCGAAAGAAGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: RPRPCLWAVLILSFSPHAIPARE*LPKEVS Trigger: TGAAACTTCTTTCGGTAGTCATTCTCTGGCAGGAAT...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | TCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTTGACCCTCACCACACACATATAGCCTaGCCCTTGCATTCATCTCCA | + |
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Preference number: 2 (lower is better) Translates to: SLGSSHSQLLPACLFDPHHTHIA*PLHSSP Trigger: TGGAGATGAATGCAAGGGGCAGGCTATATGTGTGTG...GTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGTGCTTTGTGTTCCCCTaGGCCTGCACCTTTGACGGT | + |
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Preference number: 2 (lower is better) Translates to: QADMVLEKEPRVLYLDPKCFVFP*ACTFDG Trigger: ACCGTCAAAGGTGCAGGCCCAGGGGAACACAAAGCA...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 90 bp | AAAGTACTAACCAAGGCTGTATTGTGTGTGTGTGAGGCCAAGACCTaGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTT | + |
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Preference number: 2 (lower is better) Translates to: KVLTKAVLCVCEAKT*SLGSSHSQLLPACL Trigger: AAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTCACACACACACAATACAGCCTTGGTTAGTACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | TGGCTAGCTTGGAACTGCTATGTAGACCAGGCTGGCCCTGAACTCAGATCTGCTATGCAAGTGTTCATGTaGGGCTTTGCCAAAGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: WLAWNCYVDQAGPELRSAMQVFM*GFAKEY Trigger: GTACTCTTTGGCAAAGCCTCACATGAACACTTGCAT...AGCAGATCTGAGTTCAGGGCCAGCCTGGTCTACATAGCAGTTCCAAGCTAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | GAGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCAAAAGGAAAGGAACATaGCTTGTCCTAGGTATGGTA | + |
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Preference number: 2 (lower is better) Translates to: EAKTLSLGSSHSQLLPACKRKGT*LVLGMV Trigger: TACCATACCTAGGACAAGTCATGTTCCTTTCCTTTT...GCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 90 bp | GGGCCATACGCCAGGCTTCCTTCTGCTTTCTTCACACCTATGTACTaGTCACCAGGCCTCTATAGTGAGGATTTCATGCAAGTGTTCATG | + |
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Preference number: 2 (lower is better) Translates to: GPYARLPSAFFTPMY*SPGLYSEDFMQVFM Trigger: CATGAACACTTGCATGAAATCCTCACTATAGAGGCCTGGTGACAAGTACATAGGTGTGAAGAAAGCAGAAGGAAGCCTGGCGTATGGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | AGGGTGACCAAAATAGTTGGATTATATAGGGAAGAAGCCCAACCCCCTGGGCTGAGTTGGTTAGTTGGTTaGTTGGTTACTGGCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: RVTKIVGLYREEAQPPGLSWLVG*LVTGSR Trigger: TCTGGAGCCAGTAACCAACCAACCAACTAACCAACT...CAGCCCAGGGGGTTGGGCTTCTTCCCTATATAATCCAACTATTTTGGTCACCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | TGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAATTCAAATTATCAGAGCTaGTTTGTGTTCCCCTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: WYLLCFRERPGVVANTQNSNYQS*FVFPWA Trigger: GGCCCAGGGGAACACAAAGCAGCTCTGATAATTTGA...ATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGGAACTCAGATCTGCTTaGCTCTGTCTTCCAAATACT | + |
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Preference number: 2 (lower is better) Translates to: QADMVLEKEPRVLYLDPKELRSA*LCLPNT Trigger: AGTATTTGGAAGACAGAGGCAAGCAGATCTGAGTTC...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | GAGACCCAACAATTCTCTATTCTCAGTGTGAGTATGCCCAAGATAAAACATGTCGCCTCAAACCCAGCTTaGGCTACAGATGGAAATGAG | + |
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Preference number: 2 (lower is better) Translates to: ETQQFSILSVSMPKIKHVASNPA*ATDGNE Trigger: CTCATTTCCATCTGTAGCTCAAGCTGGGTTTGAGGC...GACATGTTTTATCTTGGGCATACTCACACTGAGAATAGAGAATTGTTGGGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | ACTGTAGCCATGGATAAAGAAGGTGTGATGTATTCTAGTTATTTGGGCTTCCTCGTAGAATGGAGTTTCTaGACAAGGAGCTCCACCCCT | + |
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Preference number: 2 (lower is better) Translates to: TVAMDKEGVMYSSYLGFLVEWSF*TRSSTP Trigger: AGGGGTGGAGCTCCTTGTGCAGAAACTCCATTCTAC...GAGGAAGCCCAAATAACTAGAATACATCACACCTTCTTTATCCATGGCTACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | AGAGTACGCTCCTCTTCTGAATGTGCTAAGAGCCAAAAAGAATTTTCAAATTATCCCCATTCATCCCAGTaGTATTTCAGGGTGCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: RVRSSSECAKSQKEFSNYPHSSQ*YFRVPS Trigger: GGAGGGCACCCTGAAATACCACTGGGATGAATGGGG...ATAATTTGAAAATTCTTTTTGGCTCTTAGCACATTCAGAAGAGGAGCGTACTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR TCA 90 bp | TGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAATTCACTGAGAAGAATGTaGCATCCAAGATCATTTGAT | + |
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Preference number: 2 (lower is better) Translates to: WYLLCFRERPGVVANTQNSLRRM*HPRSFD Trigger: ATCAAATGATCTTGGATGTCACATTCTTCTCAGTGA...ATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | GCCTCTGTCTTCCAAATACTAAGACTAATGGCATGTTCCACCATACCTGTCCATATAGTGAGGATTTCATaGAAGTGTTCATGTGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: ASVFQILRLMACSTIPVHIVRIS*KCSCEA Trigger: AGCCTCACATGAACACTTGCATGAAATCCTCACTAT...ATGGACAGGTATGGTGGAACATGCCATTAGTCTTAGTATTTGGAAGACAGAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCAAAAAGGGCTGTAGAATaGAGTTTCTGCACAAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: LAYSFRCLVNYHPSQQHAKRAVE*SFCTRS Trigger: GCTCCTTGTGCAGAAACTCCATTCTACAGCCCTTTT...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 90 bp | AAAAAGGAAACCGGAAGGTTGGACTTCATTAAAATTTGGTATTTGTaGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: KKETGRLDFIKIWYL*CFRERPGVVANTQN Trigger: ATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGAAGTCCAACCTTCCGGTTTCCTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CCA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCAAAGATTCCATTTGTGTaGAGAAATGCCCAGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: LAYSFRCLVNYHPSQQHAKIPFV*RNAQNG Trigger: TCCATTCTGGGCATTTCTCCACACAAATGGAATCTT...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR GCA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCACACAACTCACTACAATaGTACAGTAATGAAGACTAT | + |
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Preference number: 2 (lower is better) Translates to: LAYSFRCLVNYHPSQQHAHNSLQ*YSNEDY Trigger: ATAGTCTTCATTACTGTAGCATTGTAGTGAGTTGTG...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CAA 90 bp | GAATACTGTCTTTCGGGCAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATCTCCTAGTCCTGGATTaGCAGGTGTGCCCCTCCATG | + |
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Preference number: 3 (lower is better) Translates to: EYCLSGSEEEGVKAHSHNLLVLD*QVCPSM Trigger: CATGGAGGGGCACACCTGCAAATCCAGGACTAGGAG...ATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTGCCCGAAAGACAGTATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CAA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCGTAGCCTTGGCTAGCTaGGAACTGCTATGTAGACCA | + |
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Preference number: 3 (lower is better) Translates to: RPRPCLWAVLILSFSPHAVALAS*ELLCRP Trigger: TGGTCTACATAGCAGTTCCAAGCTAGCCAAGGCTAC...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR TCA 72 bp | CAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATaGTGTACTTCTTCCAACAAGGCCACACCTACTCCA | + |
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Preference number: 3 (lower is better) Translates to: QRGGGCQSPLPQ*CTSSNKATPTP Trigger: TGGAGTAGGTGTGGCCTTGTTGGAAGAAGTACATCATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 72 bp | CTGTATTGTGTGTGTGTGAGGCCAAGACCTTGTCTCTaGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCC | + |
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Preference number: 3 (lower is better) Translates to: LYCVCVRPRPCL*AVLILSFSPHA Trigger: GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTCACACACACACAATACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR-3UTR CAA 90 bp | GAATACTGTCTTTCGGGCAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATTATGCAAACCTGGCCTaGAACTCACAGAGATCCACC | + |
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Preference number: 3 (lower is better) Translates to: EYCLSGSEEEGVKAHSHNYANLA*NSQRST Trigger: GGTGGATCTCTGTGAGTTCAAGGCCAGGTTTGCATA...ATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTGCCCGAAAGACAGTATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CCA 72 bp | AGACAGGGTCTGACCATGAACCTGGAGTGTACTGATTaGCAGACAAGCTCTAGGCATCATCCTGTCTCTGCC | + |
|
Preference number: 3 (lower is better) Translates to: RQGLTMNLECTD*QTSSRHHPVSA Trigger: GGCAGAGACAGGATGATGCCTAGAGCTTGTCTGCCAATCAGTACACTCCAGGTTCATGGTCAGACCCTGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGCCTGGGCCTGCACCTTaGACGGTGTCACTGAGACAA | + |
|
Preference number: 3 (lower is better) Translates to: QADMVLEKEPRVLYLDPKPGPAP*TVSLRQ Trigger: TTGTCTCAGTGACACCGTCAAAGGTGCAGGCCCAGG...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR TCA 72 bp | GCTAGCTTGGAACTGCTATGTAGACCAGGCTGGCCCTaGACTCAGATCTGCTTGCCTCTGTCTTCCAAATAC | + |
|
Preference number: 3 (lower is better) Translates to: ASLELLCRPGWP*TQICLPLSSKY Trigger: GTATTTGGAAGACAGAGGCAAGCAGATCTGAGTTCAGGGCCAGCCTGGTCTACATAGCAGTTCCAAGCTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | ATCACAGAAGGACACATTGCCAAAAGGGCTGTAGAATaGAGTTTCTGCACAAGGAGCTCCACCCCTTCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: ITEGHIAKRAVE*SFCTRSSTPSR Trigger: CCTGGAAGGGGTGGAGCTCCTTGTGCAGAAACTCCATTCTACAGCCCTTTTGGCAATGTGTCCTTCTGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | AAGAAGTTTCAAATGTCATGTCTGAGTAAGCATGTTTaGGTGGGCAGGACGGGAGGAAGCCGCTCGGAGAGA | + |
|
Preference number: 3 (lower is better) Translates to: KKFQMSCLSKHV*VGRTGGSRSER Trigger: TCTCTCCGAGCGGCTTCCTCCCGTCCTGCCCACCCAAACATGCTTACTCAGACATGACATTTGAAACTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | CCAGGTGTGGTGGCAAATACCCAGAATCTCAGAACCTaGGAGGCAGAGACAGAAGGATCTTTGCAAGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: PGVVANTQNLRT*EAETEGSLQVP Trigger: TGGAACTTGCAAAGATCCTTCTGTCTCTGCCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | GGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTaGCAAATACCCAGAATCTCAGAACCTGGGAGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: GICCASEKGQVW*QIPRISEPGRQ Trigger: CTGCCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR TCA 72 bp | AACAGCCTCTCCCAGAGAAGAGCCTCAAACCCAGCTTaGGCTACAGATGGAAATGAGCTAGAGACCAGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: NSLSQRRASNPA*ATDGNELETSS Trigger: ACTACTGGTCTCTAGCTCATTTCCATCTGTAGCTCAAGCTGGGTTTGAGGCTCTTCTCTGGGAGAGGCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | GAATACTGTCTTTCGGGCAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATTTCTTTGGCCCTGAGTaGAAGAAAAGCTTAAAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: EYCLSGSEEEGVKAHSHNFFGPE*KKSLKA Trigger: AGCTTTTAAGCTTTTCTTCAACTCAGGGCCAAAGAA...ATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTGCCCGAAAGACAGTATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGTGGTTAGTTGGTTGGTaGGTTACTGGCTCCAGACTC | + |
|
Preference number: 3 (lower is better) Translates to: QADMVLEKEPRVLYLDPKWLVGW*VTGSRL Trigger: GAGTCTGGAGCCAGTAACCAACCAACCAACTAACCA...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | TTTGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTaGTGGCAAATACCCAGAATCTCAGAACCTGGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: FGICCASEKGQV*WQIPRISEPGR Trigger: CCTCCCAGGTTCTGAGATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | GTAGTCATACCAGGAATATTGTTGTACATTGCCACACATACACACACACCTGTGAGGGAGGGGGAAGCCTaGACTGGTTGGTTAGTTGGT | + |
|
Preference number: 3 (lower is better) Translates to: VVIPGILLYIATHTHTPVREGEA*TGWLVG Trigger: ACCAACTAACCAACCAGTCAAGGCTTCCCCCTCCCT...CACAGGTGTGTGTGTATGTGTGGCAATGTACAACAATATTCCTGGTATGACTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | GTAGTCATACCAGGAATATTGTTGTACATTGCCACACATACACACACACCTGTGTGGCTGGTCTGGAGCTaGCTATGCAAACCTGGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: VVIPGILLYIATHTHTPVWLVWS*LCKPGL Trigger: AAGGCCAGGTTTGCATAGCAAGCTCCAGACCAGCCA...CACAGGTGTGTGTGTATGTGTGGCAATGTACAACAATATTCCTGGTATGACTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR TCA 72 bp | ACCTTAACTAGGCACCTCTGCCATTTGCCCCAGGTTTaGAACCTACCAGTGTATGTGTATGTGTGCATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: TLTRHLCHLPQV*NLPVYVYVCML Trigger: CAACATGCACACATACACATACACTGGTAGGTTTCAAACCTGGGGCAAATGGCAGAGGTGCCTAGTTAAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR TCA 72 bp | GAGAAAAGTACTAACCAAGGCTGTATTGTGTGTGTGTaGGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTC | + |
|
Preference number: 3 (lower is better) Translates to: EKSTNQGCIVCV*GQDLVSGQFSF Trigger: GAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTCACACACACACAATACAGCCTTGGTTAGTACTTTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | TCAAATTATCAGAGCTGCTTTGTGTTCCCCTGGGCCTaGACCTTTGACGGTGTCACTGAGACAAAGAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: SNYQSCFVFPWA*TFDGVTETKRK Trigger: TTTTCTCTTTGTCTCAGTGACACCGTCAAAGGTGCAGGCCCAGGGGAACACAAAGCAGCTCTGATAATTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | TATGTAGACCAGGCTGGCCCTGAACTCAGATCTGCTTaGCTCTGTCTTCCAAATACTAAGACTAATGGCATG | + |
|
Preference number: 3 (lower is better) Translates to: YVDQAGPELRSA*LCLPNTKTNGM Trigger: CATGCCATTAGTCTTAGTATTTGGAAGACAGAGGCAAGCAGATCTGAGTTCAGGGCCAGCCTGGTCTACATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | GAATTTTCAAATTATCAGAGCTGCTTTGTGTTCCCCTaGGCCTGCACCTTTGACGGTGTCACTGAGACAAAG | + |
|
Preference number: 3 (lower is better) Translates to: EFSNYQSCFVFP*ACTFDGVTETK Trigger: CTTTGTCTCAGTGACACCGTCAAAGGTGCAGGCCCAGGGGAACACAAAGCAGCTCTGATAATTTGAAAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | ACATTGCTGGTGGGAACAGAAGATGGTACAGCCACCTaGAGAAATAGTTCCCAAGAGACCCAACAATTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: TLLVGTEDGTAT*RNSSQETQQFS Trigger: AGAGAATTGTTGGGTCTCTTGGGAACTATTTCTCCAGGTGGCTGTACCATCTTCTGTTCCCACCAGCAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | AATGGCATGTTCCACCATACCTGTCCATACCTAGCTTTTTACATGCATTCTAGAATTATCAGAGCTGCTTaGTGTTCCCCTGGGCCTGCA | + |
|
Preference number: 3 (lower is better) Translates to: NGMFHHTCPYLAFYMHSRIIRAA*CSPGPA Trigger: TGCAGGCCCAGGGGAACACAAAGCAGCTCTGATAAT...TCTAGAATGCATGTAAAAAGCTAGGTATGGACAGGTATGGTGGAACATGCCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | TGTACTTGTCACCAGGCCTCTATAGTGAGGATTTCATaGAAGTGTTCATGTGAGGCTTTGCCAAAGAGTACG | + |
|
Preference number: 3 (lower is better) Translates to: CTCHQASIVRIS*KCSCEALPKST Trigger: CGTACTCTTTGGCAAAGCCTCACATGAACACTTGCATGAAATCCTCACTATAGAGGCCTGGTGACAAGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | TTGCATTCATCTCCAGGCAATCACAGAAGGACACATTaGCAAAAGGGCTGTAGAATGGAGTTTCTGCACAAG | + |
|
Preference number: 3 (lower is better) Translates to: LHSSPGNHRRTH*QKGCRMEFLHK Trigger: CTTGTGCAGAAACTCCATTCTACAGCCCTTTTGGCAATGTGTCCTTCTGTGATTGCCTGGAGATGAATGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | CTGCAGGCTGCAGAGAGAACTCAATTGAAGAGTATTTaGCTACCATGTATGAAAAACCTGGGTTATGTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: LQAAERTQLKSI*LPCMKNLGYVL Trigger: GAGGACATAACCCAGGTTTTTCATACATGGTAGGCAAATACTCTTCAATTGAGTTCTCTCTGCAGCCTGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR TCA 72 bp | ATCTCAAGTTCCTATGCTGTACAGCAAGCCCTTTACTaGCAGATCATCTGTGTACAGTCCTCTATGATAGGA | + |
|
Preference number: 3 (lower is better) Translates to: ISSSYAVQQALY*QIICVQSSMIG Trigger: TCCTATCATAGAGGACTGTACACAGATGATCTGTCAGTAAAGGGCTTGCTGTACAGCATAGGAACTTGAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR GCA 72 bp | GGAAGGTTGGACTTCATTAAAATTTGGTATTTGTTGTaGTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACC | + |
|
Preference number: 3 (lower is better) Translates to: GRLDFIKIWYLL*FRERPGVVANT Trigger: GGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGAAGTCCAACCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR-3UTR CAA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCACCCTGCTATTTGGGTTaGTGTAAGAAAATTGGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: LAYSFRCLVNYHPSQQHAPCYLG*CKKIGL Trigger: CAAACCAATTTTCTTACACAAACCCAAATAGCAGGG...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CCA 72 bp | TATTGTTGTACATTGCCACACATACACACACACCTGTaGAACTCCAAAATACTAGGTAGGAAATTTGATGCT | + |
|
Preference number: 3 (lower is better) Translates to: YCCTLPHIHTHL*NSKILGRKFDA Trigger: AGCATCAAATTTCCTACCTAGTATTTTGGAGTTCCACAGGTGTGTGTGTATGTGTGGCAATGTACAACAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | AGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTGGCGTGACCTCCCCTaGCTCGAAACCCAGGGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: RPRPCLWAVLILSFSPHAWRDLP*LETQGL Trigger: AAGCCCCTGGGTTTCGAGTCAGGGGAGGTCACGCCA...GGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | GAGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCAGACCACAGAGCATTaGCTCCTACCTGGCAATCAC | + |
|
Preference number: 4 (lower is better) Translates to: EAKTLSLGSSHSQLLPACQTTEH*LLPGNH Trigger: GTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTG...GCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | TCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTTGACCCTCACGCAGCTCCATCCGGATaGCAATTCGGACATGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLGSSHSQLLPACLFDPHAAPSG*QFGHAS Trigger: GCTGGCATGTCCGAATTGCCATCCGGATGGAGCTGC...GTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | TGGCTAGCTTGGAACTGCTATGTAGACCAGGCTGGCCCTGAACTCAGATCTGCTTTGGAGCAAGTGATCTaGTCTGGCGTGACCTCCCCT | + |
|
Preference number: 4 (lower is better) Translates to: WLAWNCYVDQAGPELRSALEQVI*SGVTSP Trigger: AGGGGAGGTCACGCCAGATCAGATCACTTGCTCCAA...AGCAGATCTGAGTTCAGGGCCAGCCTGGTCTACATAGCAGTTCCAAGCTAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | GAGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCGCATTGGCTCCTACCTaGCAATCACACTTGCATGCT | + |
|
Preference number: 4 (lower is better) Translates to: EAKTLSLGSSHSQLLPACALAPT*QSHLHA Trigger: AGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGC...GCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR GCA 90 bp | GAATACTGTCTTTCGGGCAGCGAGGAGGAGGGTGTCAAAGCCCACTCCCACAATGCAATCACACTTGCATaGTTTCTGGTACCAGGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: EYCLSGSEEEGVKAHSHNAITLA*FLVPGV Trigger: GACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGC...ATTGTGGGAGTGGGCTTTGACACCCTCCTCCTCGCTGCCCGAAAGACAGTATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | GGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTTGACCCTCACTCCAGTGCCCACATACTGCTCTaGGTTGGAGCAAGTGATCTG | + |
|
Preference number: 4 (lower is better) Translates to: GSSHSQLLPACLFDPHSSAHILL*VGASDL Trigger: CAGATCACTTGCTCCAACCCAGAGCAGTATGTGGGC...ACTGGAGTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | GGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTTGACCCTCACTCCAGTATGTCACAGCGTCCTTaGGTCAGGATCCCCGAAATC | + |
|
Preference number: 4 (lower is better) Translates to: GSSHSQLLPACLFDPHSSMSQRP*VRIPEI Trigger: GATTTCGGGGATCCTGACCCAAGGACGCTGTGACAT...ACTGGAGTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | GCAGTTCTCATTCTCAGCTTCTCCCCGCATGCCTTTTaGACCCTCACTCCAGTTAACAGCCTCTCCCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: AVLILSFSPHAF*TLTPVNSLSQR Trigger: TCTCTGGGAGAGGCTGTTAACTGGAGTGAGGGTCAAAAAGGCATGCGGGGAGAAGCTGAGAATGAGAACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | ACCAAGGCTGTATTGTGTGTGTGTGAGGCCAAGACCTaGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: TKAVLCVCEAKT*SLGSSHSQLLP Trigger: GGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTCACACACACACAATACAGCCTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR GCA 90 bp | GAGGCCAAGACCTTGTCTCTGGGCAGTTCTCATTCTCAGCTTCTCCCCGCATGCTCTGTAACCACTGGCTaGTGTCCTGATACTTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: EAKTLSLGSSHSQLLPACSVTTG*CPDTWK Trigger: TTTCCAAGTATCAGGACAGCAGCCAGTGGTTACAGA...GCATGCGGGGAGAAGCTGAGAATGAGAACTGCCCAGAGACAAGGTCTTGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | CAGGCAGACATGGTGCTGGAGAAGGAGCCAAGAGTTCTATATCTTGATCCAAAGCACTTGCATGCTTTCTaGTACCAGGGGTCCTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: QADMVLEKEPRVLYLDPKHLHAF*YQGSSP Trigger: GGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTG...CTTTGGATCAAGATATAGAACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | CCATACGCCAGGCTTCCTTCTGCTTTCTTCACACCTATGTACTTGTCACCAGGCAAACCCAGGGGCTTGTaGTATGGGCATTCTGGAATA | + |
|
Preference number: 4 (lower is better) Translates to: PYARLPSAFFTPMYLSPGKPRGL*YGHSGI Trigger: TATTCCAGAATGCCCATATCACAAGCCCCTGGGTTT...GCCTGGTGACAAGTACATAGGTGTGAAGAAAGCAGAAGGAAGCCTGGCGTATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | TGGTATTTGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCAAATACCCAGAATCAAAACCTTGACTGTTaGGTCGGGCCTTGTTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: WYLLCFRERPGVVANTQNQNLDC*VGPCLL Trigger: CAGCAAACAAGGCCCGACTCAACAGTCAAGGTTTTG...ATTCTGGGTATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | GCCAGGCTTCCTTCTGCTTTCTTCACACCTATGTACTaGTCACCAGGCCTCTATAGTGAGGATTTCATGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ARLPSAFFTPMY*SPGLYSEDFMQ Trigger: TTGCATGAAATCCTCACTATAGAGGCCTGGTGACAAGTACATAGGTGTGAAGAAAGCAGAAGGAAGCCTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | AAACCTCACTATCCACACACACATATAGCCTGCCCCTaGCATTCATCTCCAGGCAATCACAGAAGGACACAT | + |
|
Preference number: 4 (lower is better) Translates to: KPHYPHTHIACP*HSSPGNHRRTH Trigger: ATGTGTCCTTCTGTGATTGCCTGGAGATGAATGCAAGGGGCAGGCTATATGTGTGTGTGGATAGTGAGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR GCA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCATACCAGCCCACATACTaGTCTGGGTTGGAGCAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: LAYSFRCLVNYHPSQQHAYQPTY*SGLEQV Trigger: CACTTGCTCCAACCCAGAGCAGTATGTGGGCTGGTA...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | GGCAGGACGGGAGGAAGCCGCTCGGAGAGAAGGCTTTaGTGGTTTTATTTTTGTTTGTTGTTGTTGTATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GRTGGSRSERRL*WFYFCLLLLYF Trigger: AAAATACAACAACAACAAACAAAAATAAAACCACAAAAGCCTTCTCTCCGAGCGGCTTCCTCCCGTCCTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| 3UTR CAA 72 bp | GAAACCGGAAGGTTGGACTTCATTAAAATTTGGTATTaGTTGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: ETGRLDFIKIWY*LCFRERPGVVA Trigger: TGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGAAGTCCAACCTTCCGGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | CTGGCTTACAGTTTCAGATGTTTAGTCAATTATCATCCTAGCCAACAGCATGCACTTGTTTGCTGTCCATaGGGAATACCAGCCCACATA | + |
|
Preference number: 4 (lower is better) Translates to: LAYSFRCLVNYHPSQQHALVCCP*GIPAHI Trigger: TATGTGGGCTGGTATTCCTCATGGACAGCAAACAAG...TGCATGCTGTTGGCTAGGATGATAATTGACTAAACATCTGAAACTGTAAGCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR TCA 90 bp | TCTGCTTTCTTCACACCTATGTACTTGTCACCAGGCCTCTATAGTGAGGATTTCTCCCCGAAATCACCTTaGTCTCCTTCAAATCTATCT | + |
|
Preference number: 4 (lower is better) Translates to: SAFFTPMYLSPGLYSEDFSPKSP*SPSNLS Trigger: AGATAGATTTGAAGGAGATCAAGGTGATTTCGGGGA...GAAATCCTCACTATAGAGGCCTGGTGACAAGTACATAGGTGTGAAGAAAGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
||
| CDS-3UTR CCA 90 bp | ACTGTAGCCATGGATAAAGAAGGTGTGATGTATTCTAGTTATTTGGGCTTCCTCTGCTGTCCTGATACTTaGAAAGCCAAGCACACCCAA | + |
|
Preference number: 4 (lower is better) Translates to: TVAMDKEGVMYSSYLGFLCCPDT*KAKHTQ Trigger: TTGGGTGTGCTTGGCTTTCCAAGTATCAGGACAGCA...GAGGAAGCCCAAATAACTAGAATACATCACACCTTCTTTATCCATGGCTACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS-3UTR CCA 90 bp | TGTCTTCCAAATACTAAGACTAATGGCATGTTCCACCATACCTGTCCATACCTAACTGCACACTGTACTTaGTCACCCACTCGTCTATGT | + |
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Preference number: 4 (lower is better) Translates to: CLPNTKTNGMFHHTCPYLTAHCT*SPTRLC Trigger: ACATAGACGAGTGGGTGACCAAGTACAGTGTGCAGT...TAGGTATGGACAGGTATGGTGGAACATGCCATTAGTCTTAGTATTTGGAAGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 72 bp | ACCGGAAGGTTGGACTTCATTAAAATTTGGTATTTGTaGTGCTTCAGAGAAAGGCCAGGTGTGGTGGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: TGRLDFIKIWYL*CFRERPGVVAN Trigger: ATTTGCCACCACACCTGGCCTTTCTCTGAAGCACAACAAATACCAAATTTTAATGAAGTCCAACCTTCCGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 72 bp | GGAGCCAGAGCAGCAAATTACCCCTGCTATTTGGGTTaGTGTAAGAAAATTGGTTTGAGAGATACTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: GARAANYPCYLG*CKKIGLRDTFF Trigger: AAAGAAAGTATCTCTCAAACCAATTTTCTTACACAAACCCAAATAGCAGGGGTAATTTGCTGCTCTGGCTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| 3UTR CAA 72 bp | GAAGAATGTGACATCCAAGATCATTTGATTGATGGATaGATTTTTGAGACAGTCTCACTACATAGCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: EECDIQDHLIDG*IFETVSLHSLG Trigger: GCCAAGGCTATGTAGTGAGACTGTCTCAAAAATCAATCCATCAATCAAATGATCTTGGATGTCACATTCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS GCA 90 bp | CTCCAGCAGACCACAGAGCATTGGCTCCTACCTGGCAATCACACTTaGATGCTTTCTGGTACCAGGGGTCCTCACCCTCATCCTCTGTCG | + |
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Preference number: 5 (lower is better) Translates to: LQQTTEHWLLPGNHT*MLSGTRGPHPHPLS Trigger: CGACAGAGGATGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTGCTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS GCA 90 bp | TTGCTGGCACACTCAAGCAGCTCCATCCGGATGGCAATTCGGACATaGCAGCCTAGAGGGATCAGTCGGATGAAGCGGGAAATGATGGGG | + |
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Preference number: 5 (lower is better) Translates to: LLAHSSSSIRMAIRT*QPRGISRMKREMMG Trigger: CCCCATCATTTCCCGCTTCATCCGACTGATCCCTCTAGGCTGGCATGTCCGAATTGCCATCCGGATGGAGCTGCTTGAGTGTGCCAGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CCA 90 bp | TCTAAGGAGGTAGCTCCAGCAGACCACAGAGCATTGGCTCCTACCTaGCAATCACACTTGCATGCTTTCTGGTACCAGGGGTCCTCACCC | + |
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Preference number: 5 (lower is better) Translates to: SKEVAPADHRALAPT*QSHLHAFWYQGSSP Trigger: GGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTGCTGGAGCTACCTCCTTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS TCA 90 bp | CTGCTCTGGGTTGGAGCAAGTGATCTGATCTGGCGTGACCTCCCCTaGCTCGAAACCCAGGGGCTTGTGATATGGGCATTCTGGAATACA | + |
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Preference number: 5 (lower is better) Translates to: LLWVGASDLIWRDLP*LETQGLVIWAFWNT Trigger: TGTATTCCAGAATGCCCATATCACAAGCCCCTGGGTTTCGAGTCAGGGGAGGTCACGCCAGATCAGATCACTTGCTCCAACCCAGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS CCA 90 bp | CACAGAGCATTGGCTCCTACCTGGCAATCACACTTGCATGCTTTCTaGTACCAGGGGTCCTCACCCTCATCCTCTGTCGATGACAATCCC | + |
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Preference number: 5 (lower is better) Translates to: HRALAPTWQSHLHAF*YQGSSPSSSVDDNP Trigger: GGGATTGTCATCGACAGAGGATGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS CCA 90 bp | AGATCCAGTTCAGGCGCTCATCAGTCCTATACTGCACACTGTACTTaGTCACCCACTCGTCTATGTCACAGCGTCCTTGGGTCAGGATCC | + |
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Preference number: 5 (lower is better) Translates to: RSSSGAHQSYTAHCT*SPTRLCHSVLGSGS Trigger: GGATCCTGACCCAAGGACGCTGTGACATAGACGAGTGGGTGACCAAGTACAGTGTGCAGTATAGGACTGATGAGCGCCTGAACTGGATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 90 bp | ACACCCAAAACCTTGACTGTTGAGTCGGGCCTTGTTTGCTGTCCATaGGGAATACCAGCCCACATACTGCTCTGGGTTGGAGCAAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: TPKTLTVESGLVCCP*GIPAHILLWVGASD Trigger: ATCACTTGCTCCAACCCAGAGCAGTATGTGGGCTGGTATTCCTCATGGACAGCAAACAAGGCCCGACTCAACAGTCAAGGTTTTGGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 90 bp | TGTCCTGATACTTGGAAAGCCAAGCACACCCAAAACCTTGACTGTTaGGTCGGGCCTTGTTTGCTGTCCATGAGGAATACCAGCCCACAT | + |
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Preference number: 5 (lower is better) Translates to: CPDTWKAKHTQNLDC*VGPCLLSMRNTSPH Trigger: ATGTGGGCTGGTATTCCTCATGGACAGCAAACAAGGCCCGACTCAACAGTCAAGGTTTTGGGTGTGCTTGGCTTTCCAAGTATCAGGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 90 bp | CGTCTATGTCACAGCGTCCTTGGGTCAGGATCCCCGAAATCACCTTaGTCTCCTTCAAATCTATCTGTAACCACTGGCTGCTGTCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: RLCHSVLGSGSPKSP*SPSNLSVTTGCCPD Trigger: ATCAGGACAGCAGCCAGTGGTTACAGATAGATTTGAAGGAGATCAAGGTGATTTCGGGGATCCTGACCCAAGGACGCTGTGACATAGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS-3UTR CAA 90 bp | AATGGCATGTTCCACCATACCTGTCCATACCTAGCTTTTTACATGCATTCTAGAGCAGACCACAGAGCATaGGCTCCTACCTGGCAATCA | + |
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Preference number: 5 (lower is better) Translates to: NGMFHHTCPYLAFYMHSRADHRA*APTWQS Trigger: TGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTGC...TCTAGAATGCATGTAAAAAGCTAGGTATGGACAGGTATGGTGGAACATGCCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS-3UTR CAA 90 bp | TGTCTTCCAAATACTAAGACTAATGGCATGTTCCACCATACCTGTCCATACCTATATGTCACAGCGTCCTaGGGTCAGGATCCCCGAAAT | + |
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Preference number: 5 (lower is better) Translates to: CLPNTKTNGMFHHTCPYLYVTAS*GQDPRN Trigger: ATTTCGGGGATCCTGACCCAAGGACGCTGTGACATA...TAGGTATGGACAGGTATGGTGGAACATGCCATTAGTCTTAGTATTTGGAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS-3UTR CAA 90 bp | ACTGTAGCCATGGATAAAGAAGGTGTGATGTATTCTAGTTATTTGGGCTTCCTCACCTGGCAATCACACTaGCATGCTTTCTGGTACCAG | + |
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Preference number: 5 (lower is better) Translates to: TVAMDKEGVMYSSYLGFLTWQSH*HAFWYQ Trigger: CTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGT...GAGGAAGCCCAAATAACTAGAATACATCACACCTTCTTTATCCATGGCTACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS-3UTR CAA 90 bp | ACTGTAGCCATGGATAAAGAAGGTGTGATGTATTCTAGTTATTTGGGCTTCCTCATCCCCGAAATCACCTaGATCTCCTTCAAATCTATC | + |
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Preference number: 5 (lower is better) Translates to: TVAMDKEGVMYSSYLGFLIPEIT*ISFKSI Trigger: GATAGATTTGAAGGAGATCAAGGTGATTTCGGGGAT...GAGGAAGCCCAAATAACTAGAATACATCACACCTTCTTTATCCATGGCTACAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS TCA 72 bp | CAGCCCACATACTGCTCTGGGTTGGAGCAAGTGATCTaGTCTGGCGTGACCTCCCCTGACTCGAAACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: QPTYCSGLEQVI*SGVTSPDSKPR Trigger: CCTGGGTTTCGAGTCAGGGGAGGTCACGCCAGATCAGATCACTTGCTCCAACCCAGAGCAGTATGTGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CAA 90 bp | GCTCCAGCAGACCACAGAGCATTGGCTCCTACCTGGCAATCACACTaGCATGCTTTCTGGTACCAGGGGTCCTCACCCTCATCCTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: APADHRALAPTWQSH*HAFWYQGSSPSSSV Trigger: GACAGAGGATGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTGCTGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS GCA 72 bp | CACTCAAGCAGCTCCATCCGGATGGCAATTCGGACATaGCAGCCTAGAGGGATCAGTCGGATGAAGCGGGAA | + |
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Preference number: 6 (lower is better) Translates to: HSSSSIRMAIRT*QPRGISRMKRE Trigger: TTCCCGCTTCATCCGACTGATCCCTCTAGGCTGGCATGTCCGAATTGCCATCCGGATGGAGCTGCTTGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CCA 72 bp | CACACTTGCTGGCACACTCAAGCAGCTCCATCCGGATaGCAATTCGGACATGCCAGCCTAGAGGGATCAGTC | + |
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Preference number: 6 (lower is better) Translates to: HTCWHTQAAPSG*QFGHASLEGSV Trigger: GACTGATCCCTCTAGGCTGGCATGTCCGAATTGCCATCCGGATGGAGCTGCTTGAGTGTGCCAGCAAGTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 72 bp | GTTGGAGCAAGTGATCTGATCTGGCGTGACCTCCCCTaGCTCGAAACCCAGGGGCTTGTGATATGGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: VGASDLIWRDLP*LETQGLVIWAF Trigger: GAATGCCCATATCACAAGCCCCTGGGTTTCGAGTCAGGGGAGGTCACGCCAGATCAGATCACTTGCTCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS GCA 72 bp | CAGAGCATTGGCTCCTACCTGGCAATCACACTTGCATaGTTTCTGGTACCAGGGGTCCTCACCCTCATCCTC | + |
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Preference number: 6 (lower is better) Translates to: QSIGSYLAITLA*FLVPGVLTLIL Trigger: GAGGATGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS CAA 72 bp | GACCACAGAGCATTGGCTCCTACCTGGCAATCACACTaGCATGCTTTCTGGTACCAGGGGTCCTCACCCTCA | + |
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Preference number: 6 (lower is better) Translates to: DHRALAPTWQSH*HAFWYQGSSPS Trigger: TGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS TCA 72 bp | GGCGTGACCTCCCCTGACTCGAAACCCAGGGGCTTGTaGTATGGGCATTCTGGAATACAGTCTAAGGAGGTA | + |
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Preference number: 6 (lower is better) Translates to: GVTSPDSKPRGL*YGHSGIQSKEV Trigger: TACCTCCTTAGACTGTATTCCAGAATGCCCATATCACAAGCCCCTGGGTTTCGAGTCAGGGGAGGTCACGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS GCA 72 bp | ACCACAGAGCATTGGCTCCTACCTGGCAATCACACTTaGATGCTTTCTGGTACCAGGGGTCCTCACCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: TTEHWLLPGNHT*MLSGTRGPHPH Trigger: ATGAGGGTGAGGACCCCTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS CCA 72 bp | TCAGGCGCTCATCAGTCCTATACTGCACACTGTACTTaGTCACCCACTCGTCTATGTCACAGCGTCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: SGAHQSYTAHCT*SPTRLCHSVLG Trigger: CCCAAGGACGCTGTGACATAGACGAGTGGGTGACCAAGTACAGTGTGCAGTATAGGACTGATGAGCGCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 72 bp | CTGGTACCAGGGGTCCTCACCCTCATCCTCTGTCGATaGCAATCCCAATGTGGCTTCATAGCCAAAGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LVPGVLTLILCR*QSQCGFIAKEK Trigger: CTTCTCTTTGGCTATGAAGCCACATTGGGATTGTCATCGACAGAGGATGAGGGTGAGGACCCCTGGTACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS TCA 72 bp | ACCTTGACTGTTGAGTCGGGCCTTGTTTGCTGTCCATaGGGAATACCAGCCCACATACTGCTCTGGGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: TLTVESGLVCCP*GIPAHILLWVG Trigger: TCCAACCCAGAGCAGTATGTGGGCTGGTATTCCTCATGGACAGCAAACAAGGCCCGACTCAACAGTCAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CAA 72 bp | GTACTTGGTCACCCACTCGTCTATGTCACAGCGTCCTaGGGTCAGGATCCCCGAAATCACCTTGATCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: VLGHPLVYVTAS*GQDPRNHLDLL Trigger: AAGGAGATCAAGGTGATTTCGGGGATCCTGACCCAAGGACGCTGTGACATAGACGAGTGGGTGACCAAGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CAA 72 bp | TTCAGGCGCTCATCAGTCCTATACTGCACACTGTACTaGGTCACCCACTCGTCTATGTCACAGCGTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: FRRSSVLYCTLY*VTHSSMSQRPW Trigger: CCAAGGACGCTGTGACATAGACGAGTGGGTGACCAAGTACAGTGTGCAGTATAGGACTGATGAGCGCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CAA 90 bp | TCTGGAATACAGTCTAAGGAGGTAGCTCCAGCAGACCACAGAGCATaGGCTCCTACCTGGCAATCACACTTGCATGCTTTCTGGTACCAG | + |
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Preference number: 6 (lower is better) Translates to: SGIQSKEVAPADHRA*APTWQSHLHAFWYQ Trigger: CTGGTACCAGAAAGCATGCAAGTGTGATTGCCAGGTAGGAGCCAATGCTCTGTGGTCTGCTGGAGCTACCTCCTTAGACTGTATTCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033650.14 |
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| CDS TCA 72 bp | CACAGCGTCCTTGGGTCAGGATCCCCGAAATCACCTTaGTCTCCTTCAAATCTATCTGTAACCACTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: HSVLGSGSPKSP*SPSNLSVTTGC Trigger: GCAGCCAGTGGTTACAGATAGATTTGAAGGAGATCAAGGTGATTTCGGGGATCCTGACCCAAGGACGCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS TCA 72 bp | ACTTGGAAAGCCAAGCACACCCAAAACCTTGACTGTTaGGTCGGGCCTTGTTTGCTGTCCATGAGGAATACC | + |
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Preference number: 6 (lower is better) Translates to: TWKAKHTQNLDC*VGPCLLSMRNT Trigger: GGTATTCCTCATGGACAGCAAACAAGGCCCGACTCAACAGTCAAGGTTTTGGGTGTGCTTGGCTTTCCAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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| CDS CAA 72 bp | TCACAGCGTCCTTGGGTCAGGATCCCCGAAATCACCTaGATCTCCTTCAAATCTATCTGTAACCACTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SQRPWVRIPEIT*ISFKSICNHWL Trigger: CAGCCAGTGGTTACAGATAGATTTGAAGGAGATCAAGGTGATTTCGGGGATCCTGACCCAAGGACGCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033650.14 ENSMUST00000112368.3 |
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