RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RRP9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041506

Ensembl transcript IDs: ENSMUST00000047721.10, ENSMUST00000185336.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCAACAGGGGACACAGGGAGCCTGCGGAGTGGGATGATGCAGACTaGGTTCCGGGCCTCTTTGATCCTCCACCACCGGCCAAGCCTGTG +
Preference number: 1 (lower is better)
Translates to: GNRGHREPAEWDDAD*VPGLFDPPPPAKPV
Trigger: CACAGGCTTGGCCGGTGGTGGAGGATCAAAGAGGCCCGGAACTCAGTCTGCATCATCCCACTCCGCAGGCTCCCTGTGTCCCCTGTTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR-3UTR GCA 90 bp AATAAGGGAGAGTGTCAGGAGCCGGCAACAGGGGACACAGGGAGCCTGCGGAGTCACCGGCCAAGCCTGTaGTCCTGTCCCACGCCTGCC +
Preference number: 2 (lower is better)
Translates to: NKGECQEPATGDTGSLRSHRPSL*SCPTPA
Trigger: GGCAGGCGTGGGACAGGAGCACAGGCTTGGCCGGTG...ACTCCGCAGGCTCCCTGTGTCCCCTGTTGCCGGCTCCTGACACTCTCCCTTATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR CAA 90 bp TCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACTGGAGAACTaGAGGCTGTTGATAAAACCAACCTGTGGCCACCAGGTCTGTATT +
Preference number: 2 (lower is better)
Translates to: SCPTPATKKSPALEN*RLLIKPTCGHQVCI
Trigger: AATACAGACCTGGTGGCCACAGGTTGGTTTTATCAACAGCCTCAAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR GCA 72 bp CGGGCCTCTTTGATCCTCCACCACCGGCCAAGCCTGTaGTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCA +
Preference number: 3 (lower is better)
Translates to: RASLILHHRPSL*SCPTPATKKSP
Trigger: TGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCACAGGCTTGGCCGGTGGTGGAGGATCAAAGAGGCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR TCA 72 bp GGACACAGGGAGCCTGCGGAGTGGGATGATGCAGACTaGGTTCCGGGCCTCTTTGATCCTCCACCACCGGCC +
Preference number: 3 (lower is better)
Translates to: GHREPAEWDDAD*VPGLFDPPPPA
Trigger: GGCCGGTGGTGGAGGATCAAAGAGGCCCGGAACTCAGTCTGCATCATCCCACTCCGCAGGCTCCCTGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR GCA 72 bp CCACCACCGGCCAAGCCTGTGCTCCTGTCCCACGCCTaGCACCAAGAAGTCCCCAGCACTGGAGAACTTGAG +
Preference number: 3 (lower is better)
Translates to: PPPAKPVLLSHA*HQEVPSTGELE
Trigger: CTCAAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCACAGGCTTGGCCGGTGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
3UTR-3UTR CAA 90 bp CCGGGCCTCTTTGATCCTCCACCACCGGCCAAGCCTGTGCTCCTGTCCCACGCCGAGAACTTGAGGCTGTaGATAAAACCAACCTGTGGC +
Preference number: 3 (lower is better)
Translates to: PGLFDPPPPAKPVLLSHAENLRL*IKPTCG
Trigger: GCCACAGGTTGGTTTTATCAACAGCCTCAAGTTCTC...GGCGTGGGACAGGAGCACAGGCTTGGCCGGTGGTGGAGGATCAAAGAGGCCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS-3UTR GCA 90 bp CTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACTGGAGAACTTGAGGCTGACACCCAGAAGGGTTaGTCCAGGCCTGGCTCCCCG +
Preference number: 4 (lower is better)
Translates to: LLSHACHQEVPSTGELEADTQKG*SRPGSP
Trigger: CGGGGAGCCAGGCCTGGAGCAACCCTTCTGGGTGTC...AGCCTCAAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS-3UTR CCA 90 bp TGCTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACTGGAGAACTTGAGGGCGCTGGAGGGCGAGTaGCCGTTTCTTGGAGAGGCC +
Preference number: 4 (lower is better)
Translates to: CSCPTPATKKSPALENLRALEGE*PFLGEA
Trigger: GGCCTCTCCAAGAAACGGCCACTCGCCCTCCAGCGC...CCTCAAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS-3UTR CCA 90 bp ATAAGGGAGAGTGTCAGGAGCCGGCAACAGGGGACACAGGGAGCCTGCGGAGTGCGAGTGGCCGTTTCTTaGAGAGGCCCCACAAGGCCA +
Preference number: 4 (lower is better)
Translates to: IRESVRSRQQGTQGACGVRVAVS*RGPTRP
Trigger: TGGCCTTGTGGGGCCTCTCCAAGAAACGGCCACTCG...CACTCCGCAGGCTCCCTGTGTCCCCTGTTGCCGGCTCCTGACACTCTCCCTTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS-3UTR CCA 90 bp CGGCCAAGCCTGTGCTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACTGGATGGATACAGTCAATaGAACCCTGGTGGCCATAGA +
Preference number: 4 (lower is better)
Translates to: RPSLCSCPTPATKKSPALDGYSQ*NPGGHR
Trigger: TCTATGGCCACCAGGGTTCCATTGACTGTATCCATC...CAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCACAGGCTTGGCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS-3UTR CCA 90 bp CCTGTGCTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACTGGAGAACTTTCCTCGTTGATGAGATaGATACAGTCAATGGAACCC +
Preference number: 4 (lower is better)
Translates to: PVLLSHACHQEVPSTGELSSLMR*IQSMEP
Trigger: GGGTTCCATTGACTGTATCCATCTCATCAACGAGGA...AAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS GCA 90 bp TGGACTTGCCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCCGCTTaGCGGCCACCGGAGCCGCCCCGGGCCCGGGAGCTGGCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: WTCPCPQQSLPFAAA*RPPEPPRARELALP
Trigger: GGGCAAAGCCAGCTCCCGGGCCCGGGGCGGCTCCGGTGGCCGGCAAGCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp TGCGGTCGCCAGAGGCGAGGTACTTGCCATCAGAGGAGATGGCCATaGAGAGGACGTGGCTGCTGTGGCCTGCGGGCTGGCCCTGAGCAC +
Preference number: 5 (lower is better)
Translates to: CGRQRRGTCHQRRWP*RGRGCCGLRAGPEH
Trigger: GTGCTCAGGGCCAGCCCGCAGGCCACAGCAGCCACGTCCTCTGCATGGCCATCTCCTCTGATGGCAAGTACCTCGCCTCTGGCGACCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp GCCTGGCTCCCCGTGAAGCCCATGAGCTTCGCGCTGGAGGGCGAGTaGCCGTTTCTTGGAGAGGCCCCACAAGGCCACAGAGCCATCATC +
Preference number: 5 (lower is better)
Translates to: AWLPVKPMSFALEGE*PFLGEAPQGHRAII
Trigger: GATGATGGCTCTGTGGCCTTGTGGGGCCTCTCCAAGAAACGGCCACTCGCCCTCCAGCGCGAAGCTCATGGGCTTCACGGGGAGCCAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047721.10
ENSMUST00000185336.2
CDS GCA 90 bp CCGGCCCCCAGCTGTCACACAGCACTCTCGGCTCAGGGCATCCAATaGAGCCACAGCATCCTGGTGCCCGAACAGCGTCTCCACGTAGGA +
Preference number: 5 (lower is better)
Translates to: PAPSCHTALSAQGIQ*SHSILVPEQRLHVG
Trigger: TCCTACGTGGAGACGCTGTTCGGGCACCAGGATGCTGTGGCTGCATTGGATGCCCTGAGCCGAGAGTGCTGTGTGACAGCTGGGGGCCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp CGTGAAGCCCATGAGCTTCGCGCTGGAGGGCGAGTGGCCGTTTCTTaGAGAGGCCCCACAAGGCCACAGAGCCATCATCTGCGCCCGACA +
Preference number: 5 (lower is better)
Translates to: REAHELRAGGRVAVS*RGPTRPQSHHLRPT
Trigger: TGTCGGGCGCAGATGATGGCTCTGTGGCCTTGTGGGGCCTCTCCAAGAAACGGCCACTCGCCCTCCAGCGCGAAGCTCATGGGCTTCACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047721.10
ENSMUST00000185336.2
CDS-3UTR CAA 90 bp CAGACTGAGTTCCGGGCCTCTTTGATCCTCCACCACCGGCCAAGCCTGTGCTCCGCGAGTGGCCGTTTCTaGGAGAGGCCCCACAAGGCC +
Preference number: 5 (lower is better)
Translates to: QTEFRASLILHHRPSLCSASGRF*ERPHKA
Trigger: GGCCTTGTGGGGCCTCTCCAAGAAACGGCCACTCGC...GGAGCACAGGCTTGGCCGGTGGTGGAGGATCAAAGAGGCCCGGAACTCAGTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS CCA 90 bp ACAGCGTCCCGGTGTCCCGTGAAGGTGTACAGGTGCTGGCAGCTCTaGGCCTCCCAAATGAGAATGAGCTTGCTGCGGTCGCCAGAGGCG +
Preference number: 5 (lower is better)
Translates to: TASRCPVKVYRCWQL*ASQMRMSLLRSPEA
Trigger: CGCCTCTGGCGACCGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCGGGACGCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 90 bp GTCGCACACGGGCATTATGGGAGCCTGTGGCCACCAGGTCTGTATTaGGCAGGGCGGCTACGGATGACACCCAGAAGGGTTGCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: VAHGHYGSLWPPGLY*AGRLRMTPRRVAPG
Trigger: GCCTGGAGCAACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGCTCCCATAATGCCCGTGTGCGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp GGGATGTCACAGAGAGGGTCAAGCTGCCGGAAGCCCTCTCCACACTaGCAAAGTCGCACACGGGCATTATGGGAGCCTGTGGCCACCAGG +
Preference number: 5 (lower is better)
Translates to: GMSQRGSSCRKPSPH*QSRTRALWEPVATR
Trigger: CCTGGTGGCCACAGGCTCCCATAATGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGGCAGCTTGACCCTCTCTGTGACATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp AGTCCCGACACAGCGTCCCGGTGTCCCGTGAAGGTGTACAGGTGCTaGCAGCTCTGGGCCTCCCAAATGAGAATGAGCTTGCTGCGGTCG +
Preference number: 5 (lower is better)
Translates to: SPDTASRCPVKVYRC*QLWASQMRMSLLRS
Trigger: CGACCGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCGGGACGCTGTGTCGGGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp CCCGCAAAACTCGAATGTCGGTGGGAGCTGGGGCCTGGATCTCCTTaGCCACCGACTTCTGCAACCTGCCTCTCTGCTCCAGCACATCCT +
Preference number: 5 (lower is better)
Translates to: PAKLECRWELGPGSP*PPTSATCLSAPAHP
Trigger: AGGATGTGCTGGAGCAGAGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGAGTTTTGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp AATGGAGAGCTGGTGGCCCCGCAAAACTCGAATGTCGGTGGGAGCTaGGGCCTGGATCTCCTTGGCCACCGACTTCTGCAACCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: NGELVAPQNSNVGGS*GLDLLGHRLLQPAS
Trigger: AGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGAGTTTTGCGGGGCCACCAGCTCTCCATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp CAGCACATCCTCCTTCAAGCGCCCGGCCACCTGATCCTCCTCGAATaGACGGGCTTCAGCCTTCTCCTCCTCTTGCTGCCTGAGTTGTTC +
Preference number: 5 (lower is better)
Translates to: QHILLQAPGHLILLE*TGFSLLLLLLPELF
Trigger: GAACAACTCAGGCAGCAAGAGGAGGAGAAGGCTGAAGCCCGTGCATTCGAGGAGGATCAGGTGGCCGGGCGCTTGAAGGAGGATGTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp AGCATCCTGGTGCCCGAACAGCGTCTCCACGTAGGAGTTCTCGGCTaGATTCCACACCTTCACAGAGCGGTCGTGGGAAGTGCTGTAGAG +
Preference number: 5 (lower is better)
Translates to: SILVPEQRLHVGVLG*IPHLHRAVVGSAVE
Trigger: CTCTACAGCACTTCCCACGACCGCTCTGTGAAGGTGTGGAATGCAGCCGAGAACTCCTACGTGGAGACGCTGTTCGGGCACCAGGATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS-3UTR CAA 90 bp ACCGGCCAAGCCTGTGCTCCTGTCCCACGCCTGCCACCAAGAAGTCCCCAGCACACCATGTGCTCCTCGTaGATGAGATGGATACAGTCA +
Preference number: 5 (lower is better)
Translates to: TGQACAPVPRLPPRSPQHTMCSS*MRWIQS
Trigger: TGACTGTATCCATCTCATCAACGAGGAGCACATGGT...GTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGCACAGGCTTGGCCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185336.2
CDS GCA 90 bp AATCGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTTGGACTTaGCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCCGCTTGCCGG +
Preference number: 5 (lower is better)
Translates to: NRWKSLHSFCRHPWT*PCPQQSLPFAAACR
Trigger: CCGGCAAGCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp AGTTCTCGGCTGCATTCCACACCTTCACAGAGCGGTCGTGGGAAGTaGTGTAGAGCTGGTGGGTACCTTTTCGGAAGGCTAGTCCCGACA +
Preference number: 5 (lower is better)
Translates to: SSRLHSTPSQSGRGK*CRAGGYLFGRLVPT
Trigger: TGTCGGGACTAGCCTTCCGAAAAGGTACCCACCAGCTCTACAGCACTTCCCACGACCGCTCTGTGAAGGTGTGGAATGCAGCCGAGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp CTGTTGATAAAACCAACCAGGGGGATGTCACAGAGAGGGTCAAGCTaGCGGAAGCCCTCTCCACACTGCCAAAGTCGCACACGGGCATTA +
Preference number: 5 (lower is better)
Translates to: LLIKPTRGMSQRGSS*RKPSPHCQSRTRAL
Trigger: TAATGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGGCAGCTTGACCCTCTCTGTGACATCCCCCTGGTTGGTTTTATCAACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp TCTCAGAATCGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTTaGACTTGCCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: SQNRWKSLHSFCRHP*TCPCPQQSLPFAAA
Trigger: AGCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 90 bp CCAAGCTCTCGCTCTCAGAATCGCTGGAAATCTCTTCATTCATTTTaGCGCCACCCTTGGACTTGCCCCTGTCCGCAGCAGAGTCTACCT +
Preference number: 5 (lower is better)
Translates to: PSSRSQNRWKSLHSF*RHPWTCPCPQQSLP
Trigger: AGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCGAGAGCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 90 bp CTTCCTCTGTTTTCCTTGGAGCCAAGCTCTCGCTCTCAGAATCGCTaGAAATCTCTTCATTCATTTTGCCGCCACCCTTGGACTTGCCCC +
Preference number: 5 (lower is better)
Translates to: LPLFSLEPSSRSQNR*KSLHSFCRHPWTCP
Trigger: GGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCGAGAGCTTGGCTCCAAGGAAAACAGAGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 72 bp CAGAGGACGTGGCTGCTGTGGCCTGCGGGCTGGCCCTaGGCACCCTTCTTGGCTCGAGGGATCACATGCAGC +
Preference number: 6 (lower is better)
Translates to: QRTWLLWPAGWP*APFLARGITCS
Trigger: GCTGCATGTGATCCCTCGAGCCAAGAAGGGTGCTCAGGGCCAGCCCGCAGGCCACAGCAGCCACGTCCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 72 bp GGAAGGCTAGTCCCGACACAGCGTCCCGGTGTCCCGTaGAGGTGTACAGGTGCTGGCAGCTCTGGGCCTCCC +
Preference number: 6 (lower is better)
Translates to: GRLVPTQRPGVP*RCTGAGSSGPP
Trigger: GGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCGGGACGCTGTGTCGGGACTAGCCTTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 72 bp GGCCACCAGGTCTGTATTGAGCAGGGCGGCTACGGATaGCACCCAGAAGGGTTGCTCCAGGCCTGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: GHQVCIEQGGYG*HPEGLLQAWLP
Trigger: GGGGAGCCAGGCCTGGAGCAACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 72 bp TGCTCCAGCACATCCTCCTTCAAGCGCCCGGCCACCTaGTCCTCCTCGAATGCACGGGCTTCAGCCTTCTCC +
Preference number: 6 (lower is better)
Translates to: CSSTSSFKRPAT*SSSNARASAFS
Trigger: GGAGAAGGCTGAAGCCCGTGCATTCGAGGAGGATCAGGTGGCCGGGCGCTTGAAGGAGGATGTGCTGGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp CTCCTTCAAGCGCCCGGCCACCTGATCCTCCTCGAATaGACGGGCTTCAGCCTTCTCCTCCTCTTGCTGCCT +
Preference number: 6 (lower is better)
Translates to: LLQAPGHLILLE*TGFSLLLLLLP
Trigger: AGGCAGCAAGAGGAGGAGAAGGCTGAAGCCCGTGCATTCGAGGAGGATCAGGTGGCCGGGCGCTTGAAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp GGGCCTGGATCTCCTTGGCCACCGACTTCTGCAACCTaGCTCTCTGCTCCAGCACATCCTCCTTCAAGCGCC +
Preference number: 6 (lower is better)
Translates to: GPGSPWPPTSAT*LSAPAHPPSSA
Trigger: GGCGCTTGAAGGAGGATGTGCTGGAGCAGAGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp CTCGAATGTCGGTGGGAGCTGGGGCCTGGATCTCCTTaGCCACCGACTTCTGCAACCTGCCTCTCTGCTCCA +
Preference number: 6 (lower is better)
Translates to: LECRWELGPGSP*PPTSATCLSAP
Trigger: TGGAGCAGAGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp CTGGTGGCCCCGCAAAACTCGAATGTCGGTGGGAGCTaGGGCCTGGATCTCCTTGGCCACCGACTTCTGCAA +
Preference number: 6 (lower is better)
Translates to: LVAPQNSNVGGS*GLDLLGHRLLQ
Trigger: TTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGAGTTTTGCGGGGCCACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp CATGAGCTTCGCGCTGGAGGGCGAGTGGCCGTTTCTTaGAGAGGCCCCACAAGGCCACAGAGCCATCATCTG +
Preference number: 6 (lower is better)
Translates to: HELRAGGRVAVS*RGPTRPQSHHL
Trigger: CAGATGATGGCTCTGTGGCCTTGTGGGGCCTCTCCAAGAAACGGCCACTCGCCCTCCAGCGCGAAGCTCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047721.10
ENSMUST00000185336.2
CDS CAA 72 bp ACTCGAATGTCGGTGGGAGCTGGGGCCTGGATCTCCTaGGCCACCGACTTCTGCAACCTGCCTCTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: TRMSVGAGAWIS*ATDFCNLPLCS
Trigger: GGAGCAGAGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 90 bp AGTCGCACACGGGCATTATGGGAGCCTGTGGCCACCAGGTCTGTATaGAGCAGGGCGGCTACGGATGACACCCAGAAGGGTTGCTCCAGG +
Preference number: 6 (lower is better)
Translates to: SRTRALWEPVATRSV*SRAATDDTQKGCSR
Trigger: CCTGGAGCAACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGCTCCCATAATGCCCGTGTGCGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp GACACAGCGTCCCGGTGTCCCGTGAAGGTGTACAGGTaGTGGCAGCTCTGGGCCTCCCAAATGAGAATGAGC +
Preference number: 6 (lower is better)
Translates to: DTASRCPVKVYR*WQLWASQMRMS
Trigger: GCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCGGGACGCTGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp CAGAGAGGGTCAAGCTGCCGGAAGCCCTCTCCACACTaGCAAAGTCGCACACGGGCATTATGGGAGCCTGTG +
Preference number: 6 (lower is better)
Translates to: QRGSSCRKPSPH*QSRTRALWEPV
Trigger: CACAGGCTCCCATAATGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGGCAGCTTGACCCTCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp CGGTGTCCCGTGAAGGTGTACAGGTGCTGGCAGCTCTaGGCCTCCCAAATGAGAATGAGCTTGCTGCGGTCG +
Preference number: 6 (lower is better)
Translates to: RCPVKVYRCWQL*ASQMRMSLLRS
Trigger: CGACCGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 72 bp CGGGCATTATGGGAGCCTGTGGCCACCAGGTCTGTATaGAGCAGGGCGGCTACGGATGACACCCAGAAGGGT +
Preference number: 6 (lower is better)
Translates to: RALWEPVATRSV*SRAATDDTQKG
Trigger: ACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGCTCCCATAATGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS TCA 72 bp GGGCATTATGGGAGCCTGTGGCCACCAGGTCTGTATTaGGCAGGGCGGCTACGGATGACACCCAGAAGGGTT +
Preference number: 6 (lower is better)
Translates to: GHYGSLWPPGLY*AGRLRMTPRRV
Trigger: AACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGCTCCCATAATGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp GTGCCCGAACAGCGTCTCCACGTAGGAGTTCTCGGCTaGATTCCACACCTTCACAGAGCGGTCGTGGGAAGT +
Preference number: 6 (lower is better)
Translates to: VPEQRLHVGVLG*IPHLHRAVVGS
Trigger: ACTTCCCACGACCGCTCTGTGAAGGTGTGGAATGCAGCCGAGAACTCCTACGTGGAGACGCTGTTCGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp ACAGCGTCCCGGTGTCCCGTGAAGGTGTACAGGTGCTaGCAGCTCTGGGCCTCCCAAATGAGAATGAGCTTG +
Preference number: 6 (lower is better)
Translates to: TASRCPVKVYRC*QLWASQMRMSL
Trigger: CAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACCTGTACACCTTCACGGGACACCGGGACGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 90 bp GAATCGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTTGGACTaGCCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCCGCTTGCCG +
Preference number: 6 (lower is better)
Translates to: ESLEISSFILPPPLD*PLSAAESTFRRRLP
Trigger: CGGCAAGCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp AAACCAACCAGGGGGATGTCACAGAGAGGGTCAAGCTaGCGGAAGCCCTCTCCACACTGCCAAAGTCGCACA +
Preference number: 6 (lower is better)
Translates to: KPTRGMSQRGSS*RKPSPHCQSRT
Trigger: TGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGGCAGCTTGACCCTCTCTGTGACATCCCCCTGGTTGGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 90 bp CTCTCAGAATCGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTaGGACTTGCCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: LSESLEISSFILPPP*DLPLSAAESTFRRR
Trigger: GCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 90 bp GCCAAGCTCTCGCTCTCAGAATCGCTGGAAATCTCTTCATTCATTTaGCCGCCACCCTTGGACTTGCCCCTGTCCGCAGCAGAGTCTACC +
Preference number: 6 (lower is better)
Translates to: AKLSLSESLEISSFI*PPPLDLPLSAAEST
Trigger: GGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCGAGAGCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp AAATCTCTTCATTCATTTTGCCGCCACCCTTGGACTTaGCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGCC +
Preference number: 6 (lower is better)
Translates to: KSLHSFCRHPWT*PCPQQSLPFAA
Trigger: GGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp CGCTCTCAGAATCGCTGGAAATCTCTTCATTCATTTTaGCGCCACCCTTGGACTTGCCCCTGTCCGCAGCAG +
Preference number: 6 (lower is better)
Translates to: RSQNRWKSLHSF*RHPWTCPCPQQ
Trigger: CTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS GCA 72 bp CTGCATTCCACACCTTCACAGAGCGGTCGTGGGAAGTaGTGTAGAGCTGGTGGGTACCTTTTCGGAAGGCTA +
Preference number: 6 (lower is better)
Translates to: LHSTPSQSGRGK*CRAGGYLFGRL
Trigger: TAGCCTTCCGAAAAGGTACCCACCAGCTCTACAGCACTTCCCACGACCGCTCTGTGAAGGTGTGGAATGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 72 bp GAAATCTCTTCATTCATTTTGCCGCCACCCTTGGACTaGCCCCTGTCCGCAGCAGAGTCTACCTTTCGCCGC +
Preference number: 6 (lower is better)
Translates to: EISSFILPPPLD*PLSAAESTFRR
Trigger: GCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 72 bp GAGCCATCATCTGCGCCCGACACCATGTGCTCCTCGTaGATGAGATGGATACAGTCAATGGAACCCTGGTGG +
Preference number: 6 (lower is better)
Translates to: EPSSAPDTMCSS*MRWIQSMEPWW
Trigger: CCACCAGGGTTCCATTGACTGTATCCATCTCATCAACGAGGAGCACATGGTGTCGGGCGCAGATGATGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047721.10
ENSMUST00000185336.2
CDS CCA 72 bp CGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTTaGACTTGCCCCTGTCCGCAGCAGAGTCTACCTTTC +
Preference number: 6 (lower is better)
Translates to: RWKSLHSFCRHP*TCPCPQQSLPF
Trigger: GAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 72 bp TCGCTCTCAGAATCGCTGGAAATCTCTTCATTCATTTaGCCGCCACCCTTGGACTTGCCCCTGTCCGCAGCA +
Preference number: 6 (lower is better)
Translates to: SLSESLEISSFI*PPPLDLPLSAA
Trigger: TGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CAA 72 bp TCGCTGGAAATCTCTTCATTCATTTTGCCGCCACCCTaGGACTTGCCCCTGTCCGCAGCAGAGTCTACCTTT +
Preference number: 6 (lower is better)
Translates to: SLEISSFILPPP*DLPLSAAESTF
Trigger: AAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10
CDS CCA 72 bp TTTTCCTTGGAGCCAAGCTCTCGCTCTCAGAATCGCTaGAAATCTCTTCATTCATTTTGCCGCCACCCTTGG +
Preference number: 6 (lower is better)
Translates to: FSLEPSSRSQNR*KSLHSFCRHPW
Trigger: CCAAGGGTGGCGGCAAAATGAATGAAGAGATTTCCAGCGATTCTGAGAGCGAGAGCTTGGCTCCAAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047721.10