RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RRP15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001305

Ensembl transcript IDs: ENSMUST00000001339.6

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCAGGGAAGCAGAGATTTCATATCAAATTCACTTTAATTATAAATaGGACCGCACTTTAGAAACCCTGATGGATGATGGGCATGTGTCC +
Preference number: 1 (lower is better)
Translates to: SREAEISYQIHFNYK*DRTLETLMDDGHVS
Trigger: GGACACATGCCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAATTTGATATGAAATCTCTGCTTCCCTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR-3UTR TCA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGAATACAGTCTGCACCTaGGGAACCCTAGAGCACAGG +
Preference number: 2 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQNTVCT*GTLEHR
Trigger: CCTGTGCTCTAGGGTTCCTCAGGTGCAGACTGTATT...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR-3UTR CCA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACCTAGCATTTGGCAGATaGCCATGCGCAGGCTCCCAA +
Preference number: 2 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHLAFGR*PCAGSQ
Trigger: TTGGGAGCCTGCGCATGGCCATCTGCCAAATGCTAG...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR-3UTR CCA 90 bp ATTCACTTTAATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGGGAAGTCCTAGCATTTaGCAGATGGCCATGCGCAGG +
Preference number: 2 (lower is better)
Translates to: IHFNYKWDRTLETLMDDGGSPSI*QMAMRR
Trigger: CCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCC...CCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR-3UTR GCA 90 bp ATTCACTTTAATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGAGGATCCTAGAAAATTaGAGTTTACTGCTCAAGAAA +
Preference number: 2 (lower is better)
Translates to: IHFNYKWDRTLETLMDDGRILEN*SLLLKK
Trigger: TTTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCT...CCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR GCA 72 bp GGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATaGGCAGGCTCCCAACCGTCGGGTCATTTGCAGCGG +
Preference number: 3 (lower is better)
Translates to: GSQEVLAFGRWP*AGSQPSGHLQR
Trigger: CCGCTGCAAATGACCCGACGGTTGGGAGCCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR CCA 72 bp AGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATaGCCATGCGCAGGCTCCCAACCGTCGGGTCATTTG +
Preference number: 3 (lower is better)
Translates to: STGSQEVLAFGR*PCAGSQPSGHL
Trigger: CAAATGACCCGACGGTTGGGAGCCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
3UTR-3UTR CAA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACAAGGATCCTAGAAAATaGCAGTTTACTGCTCAAGAA +
Preference number: 3 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHKDPRK*QFTAQE
Trigger: TTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCTT...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR TCA 90 bp GAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCAGGCTCGGCATCTGCCCAGCCTaGATTGGTCCCAGCACTCGA +
Preference number: 4 (lower is better)
Translates to: EHRFSGSPSIWQMAMRRLGICPA*IGPSTR
Trigger: TCGAGTGCTGGGACCAATTCAGGCTGGGCAGATGCC...GAGCCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR GCA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGGCTGGCTGCGGCCTCTaGCCTGCCACCAGCAGGCTC +
Preference number: 4 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQAGCGL*PATSRL
Trigger: GAGCCTGCTGGTGGCAGGGCAGAGGCCGCAGCCAGC...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CCA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGCAGTTGACATCAGCTTaGCTCGCTTGCGGACGGAGC +
Preference number: 4 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQQLTSA*LACGRS
Trigger: GCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTG...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR GCA 90 bp ACCCTAGAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCTTTGTTAAGGATTTTTaGCATGGCATCTGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: TLEHRFSGSPSIWQMAMRFVKDF*HGICPA
Trigger: GGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAA...GCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTCTAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CCA 90 bp ACCCTAGAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCGTCTTTGACAACATCTaGCTTCACTCTGCACAGCAT +
Preference number: 4 (lower is better)
Translates to: TLEHRFSGSPSIWQMAMRVFDNI*LHSAQH
Trigger: ATGCTGTGCAGAGTGAAGCCAGATGTTGTCAAAGAC...GCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTCTAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CCA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTCACTTCAGTCTGTCTaGCTTTGGGGCTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQSLQSV*LWGSSQ
Trigger: CTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGA...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR GCA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACTCAGCTTGGCTCGCTTaGGGACGGAGCCTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHSAWLA*GRSLLL
Trigger: AAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGA...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR TCA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGGCTCTTTGTTTTTGGTaGGGATGGTGGCTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQALCFW*GWWLCF
Trigger: AAAGCAAAGCCACCATCCTCACCAAAAACAAAGAGC...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR TCA 90 bp GATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTTTACTGCTCCCTGGGCTCTCTTCTaGTTTCACTTCAGTCTGTCT +
Preference number: 4 (lower is better)
Translates to: DDGHVSTAKDPRKLQFTAPWALF*FHFSLS
Trigger: AGACAGACTGAAGTGAAATCAGAAGAGAGCCCAGGG...AGCAGTAAACTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CCA 90 bp ATTCACTTTAATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGCTGCCCAGCCTGAATTaGTCCCAGCACTCGACTCTG +
Preference number: 4 (lower is better)
Translates to: IHFNYKWDRTLETLMDDGLPSLN*SQHSTL
Trigger: CAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAG...CCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR TCA 90 bp GGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTTTACTGCTCAAGAACATCAGAAGAGTCTTTaGCCTCATCTTCTAGCTTCG +
Preference number: 4 (lower is better)
Translates to: GHVSTAKDPRKLQFTAQEHQKSL*PHLLAS
Trigger: CGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATG...TTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR GCA 90 bp GGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTTTACTGCTCAAGAACTGAAGGTTCCTCTCTaGCTCTTTGTCTTTGACAAC +
Preference number: 4 (lower is better)
Translates to: GHVSTAKDPRKLQFTAQELKVPL*LFVFDN
Trigger: GTTGTCAAAGACAAAGAGGCAGAGAGGAACCTTCAG...TTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR TCA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACCTTCTTGGAAACAGTTaGCATCAGCTTGGCTCGCTT +
Preference number: 4 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHLLGNS*HQLGSL
Trigger: AAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAG...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR GCA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACCGCTTCTTATCAAGCTaGTTCCTTTTCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHRFLSS*FLFSSL
Trigger: GAGGCTGGAGAAAAGGAAGCAGCTTGATAAGAAGCG...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp ACCCTAGAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCTCGCCCTCGCTCTCCTaGTCCCAGTCCTTCATGCTG +
Preference number: 5 (lower is better)
Translates to: TLEHRFSGSPSIWQMAMRSPSLS*SQSFML
Trigger: CAGCATGAAGGACTGGGACAAGGAGAGCGAGGGCGA...GCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTCTAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 90 bp CGCCCTCGCTCTCCTTGTCCCAGTCCTTCATGCTGGCTCCCATCATaGAATCATCTCGCAGAATCTTCCACCCTGGGCTCTCTTCTGATT +
Preference number: 5 (lower is better)
Translates to: RPRSPCPSPSCWLPS*NHLAESSTLGSLLI
Trigger: AATCAGAAGAGAGCCCAGGGTGGAAGATTCTGCGAGATGATTTCATGATGGGAGCCAGCATGAAGGACTGGGACAAGGAGAGCGAGGGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS GCA 90 bp GAGCTGCACCACACCCCTTGTCGCAATCCTCTGAAGGTTCCTCTCTaGCTCTTTGTCTTTGACAACATCTGGCTTCACTCTGCACAGCAT +
Preference number: 5 (lower is better)
Translates to: ELHHTPCRNPLKVPL*LFVFDNIWLHSAQH
Trigger: ATGCTGTGCAGAGTGAAGCCAGATGTTGTCAAAGACAAAGAGGCAGAGAGGAACCTTCAGAGGATTGCGACAAGGGGTGTGGTGCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CCA 90 bp TCCACCCTGGGCTCTCTTCTGATTTCACTTCAGTCTGTCTGGCTTTaGGGCTCTTCCCAGCAGGACTGTTCCTACTTGTACCATCCATTC +
Preference number: 5 (lower is better)
Translates to: STLGSLLISLQSVWL*GSSQQDCSYLYHPF
Trigger: GAATGGATGGTACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGAAATCAGAAGAGAGCCCAGGGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp GAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCAGGCTCTCTGCCTCTTTGTCTTaGACAACATCTGGCTTCACT +
Preference number: 5 (lower is better)
Translates to: EHRFSGSPSIWQMAMRRLSASLS*TTSGFT
Trigger: AGTGAAGCCAGATGTTGTCAAAGACAAAGAGGCAGA...GAGCCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp ACCCTAGAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCTTCCTCTCTGCCTCTTaGTCTTTGACAACATCTGGC +
Preference number: 5 (lower is better)
Translates to: TLEHRFSGSPSIWQMAMRFLSAS*SLTTSG
Trigger: GCCAGATGTTGTCAAAGACAAAGAGGCAGAGAGGAA...GCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTCTAGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp ACCCTGATGGATGATGGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTCAGTCTGTCTGGCTTaGGGGCTCTTCCCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: TLMDDGHVSTAKDPRKLQSVCLA*GLFPAG
Trigger: TCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGA...CTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCCATCATCCATCAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CCA 90 bp GAATCTTCCACCCTGGGCTCTCTTCTGATTTCACTTCAGTCTGTCTaGCTTTGGGGCTCTTCCCAGCAGGACTGTTCCTACTTGTACCAT +
Preference number: 5 (lower is better)
Translates to: ESSTLGSLLISLQSV*LWGSSQQDCSYLYH
Trigger: ATGGTACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGAAATCAGAAGAGAGCCCAGGGTGGAAGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp GAGCACAGGTTCTCAGGAAGTCCTAGCATTTGGCAGATGGCCATGCGCAGGCTCCTGATGAAATCCTTCTaGGAAACAGTTGACATCAGC +
Preference number: 5 (lower is better)
Translates to: EHRFSGSPSIWQMAMRRLLMKSF*ETVDIS
Trigger: GCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAG...GAGCCTGCGCATGGCCATCTGCCAAATGCTAGGACTTCCTGAGAACCTGTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 90 bp AGGAGTCTTTTTGTTAAGGATTTTTGCCATGGCATCTGCCCAGCCTaGATTGGTCCCAGCACTCGACTCTGCGGCGTCTTCATTGTCTTC +
Preference number: 5 (lower is better)
Translates to: RSLFVKDFCHGICPA*IGPSTRLCGVFIVF
Trigger: GAAGACAATGAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAAAAGACTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 90 bp CCTCCTGCTTCCTTAACCTTTTCGCCAACATTCCTTTGGTGTTTCTaGACAGCATTGAAGAGCTGCACCACACCCCTTGTCGCAATCCTC +
Preference number: 5 (lower is better)
Translates to: PPASLTFSPTFLWCF*TALKSCTTPLVAIL
Trigger: GAGGATTGCGACAAGGGGTGTGGTGCAGCTCTTCAATGCTGTTCAGAAACACCAAAGGAATGTTGGCGAAAAGGTTAAGGAAGCAGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 90 bp ATCCATTCCTCGAAGAACACTGATGAAATCCTTCTTGGAAACAGTTaGCATCAGCTTGGCTCGCTTGCGGACGGAGCCTCCTGCTTCCTT +
Preference number: 5 (lower is better)
Translates to: IHSSKNTDEILLGNS*HQLGSLADGASCFL
Trigger: AAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGTGTTCTTCGAGGAATGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CCA 90 bp AATCCTCTGAAGGTTCCTCTCTGCCTCTTTGTCTTTGACAACATCTaGCTTCACTCTGCACAGCATTTCCCACTCCCGCTTCTTATCAAG +
Preference number: 5 (lower is better)
Translates to: NPLKVPLCLFVFDNI*LHSAQHFPLPLLIK
Trigger: CTTGATAAGAAGCGGGAGTGGGAAATGCTGTGCAGAGTGAAGCCAGATGTTGTCAAAGACAAAGAGGCAGAGAGGAACCTTCAGAGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp GGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTTTACTGCTCAAGAACCTTCTTGGAAACAGTaGACATCAGCTTGGCTCGCT +
Preference number: 5 (lower is better)
Translates to: GHVSTAKDPRKLQFTAQEPSWKQ*TSAWLA
Trigger: AGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGG...TTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp AATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGCATGTGTCCCCATCAGAAGAGTCTTaGACCTCATCTTCTAGCTTC +
Preference number: 5 (lower is better)
Translates to: NYKWDRTLETLMDDGHVSPSEES*TSSSSF
Trigger: GAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATGG...GGACACATGCCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp ATTCACTTTAATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGTTCGACGCTGCAGCCTaGGCTACCATCTTCATCTTT +
Preference number: 5 (lower is better)
Translates to: IHFNYKWDRTLETLMDDGFDAAA*ATIFIF
Trigger: AAAGATGAAGATGGTAGCCAAGGCTGCAGCGTCGAA...CCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACTCCAGCTCTTTGTTTTaGGTGAGGATGGTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHSSSLF*VRMVAL
Trigger: CAAAGCCACCATCCTCACCAAAAACAAAGAGCTGGA...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp GGGCATGTGTCCACAGCAAAGGATCCTAGAAAATTGCAGTTTACTGCTCAAGAATTCGCCAACATTCCTTaGGTGTTTCTGAACAGCATT +
Preference number: 5 (lower is better)
Translates to: GHVSTAKDPRKLQFTAQEFANIP*VFLNSI
Trigger: AATGCTGTTCAGAAACACCAAAGGAATGTTGGCGAA...TTCTTGAGCAGTAAACTGCAATTTTCTAGGATCCTTTGCTGTGGACACATGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp TTTATGTACCTTTTTCTTAAAGGCTTAGCCACACAAACCAACGGCACCAATCACTCACAGGATTCAACATaGTCCTCACTGTCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: FMYLFLKGLATQTNGTNHSQDST*SSLSAS
Trigger: AGAAGCAGACAGTGAGGACAATGTTGAATCCTGTGA...GTGATTGGTGCCGTTGGTTTGTGTGGCTAAGCCTTTAAGAAAAAGGTACATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS-3UTR CAA 90 bp ATTCACTTTAATTATAAATGGGACCGCACTTTAGAAACCCTGATGGATGATGGGTCCTTCTCCAGCTCTTaGTTTTTGGTGAGGATGGTG +
Preference number: 5 (lower is better)
Translates to: IHFNYKWDRTLETLMDDGSFSSS*FLVRMV
Trigger: CACCATCCTCACCAAAAACAAAGAGCTGGAGAAGGA...CCCATCATCCATCAGGGTTTCTAAAGTGCGGTCCCATTTATAATTAAAGTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 72 bp TTTGTTAAGGATTTTTGCCATGGCATCTGCCCAGCCTaGATTGGTCCCAGCACTCGACTCTGCGGCGTCTTC +
Preference number: 6 (lower is better)
Translates to: FVKDFCHGICPA*IGPSTRLCGVF
Trigger: GAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp TTAAGGATTTTTGCCATGGCATCTGCCCAGCCTGAATaGGTCCCAGCACTCGACTCTGCGGCGTCTTCATTG +
Preference number: 6 (lower is better)
Translates to: LRIFAMASAQPE*VPALDSAASSL
Trigger: CAATGAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAGATGCCATGGCAAAAATCCTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp TCCTTCTTGGAAACAGTTGACATCAGCTTGGCTCGCTaGCGGACGGAGCCTCCTGCTTCCTTAACCTTTTCG +
Preference number: 6 (lower is better)
Translates to: SFLETVDISLAR*RTEPPASLTFS
Trigger: CGAAAAGGTTAAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp CTCGACTCTGCGGCGTCTTCATTGTCTTCCTCACAGGATTCAACATaGTCCTCACTGTCTGCTTCTGCAGCTCCATCATCTGAGTGGTCC +
Preference number: 6 (lower is better)
Translates to: LDSAASSLSSSQDST*SSLSASAAPSSEWS
Trigger: GGACCACTCAGATGATGGAGCTGCAGAAGCAGACAGTGAGGACAATGTTGAATCCTGTGAGGAAGACAATGAAGACGCCGCAGAGTCGAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp TGGTCCATCTCTGAGTCACAGCTTCCTTCTCCATCAGAAGAGTCTTaGACCTCATCTTCTAGCTTCGACGCTGCAGCCTTGGCTACCATC +
Preference number: 6 (lower is better)
Translates to: WSISESQLPSPSEES*TSSSSFDAAALATI
Trigger: GATGGTAGCCAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATGGAGAAGGAAGCTGTGACTCAGAGATGGACCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp TTCCACCCTGGGCTCTCTTCTGATTTCACTTCAGTCTGTCTGGCTTaGGGGCTCTTCCCAGCAGGACTGTTCCTACTTGTACCATCCATT +
Preference number: 6 (lower is better)
Translates to: FHPGLSSDFTSVCLA*GLFPAGLFLLVPSI
Trigger: AATGGATGGTACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGAAATCAGAAGAGAGCCCAGGGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 72 bp CTGAGTCACAGCTTCCTTCTCCATCAGAAGAGTCTTTaGCCTCATCTTCTAGCTTCGACGCTGCAGCCTTGG +
Preference number: 6 (lower is better)
Translates to: LSHSFLLHQKSL*PHLLASTLQPW
Trigger: CCAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATGGAGAAGGAAGCTGTGACTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 72 bp TCGAAGAACACTGATGAAATCCTTCTTGGAAACAGTTaGCATCAGCTTGGCTCGCTTGCGGACGGAGCCTCC +
Preference number: 6 (lower is better)
Translates to: SKNTDEILLGNS*HQLGSLADGAS
Trigger: GGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGTGTTCTTCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CCA 72 bp GGCTCTCTTCTGATTTCACTTCAGTCTGTCTGGCTTTaGGGCTCTTCCCAGCAGGACTGTTCCTACTTGTAC +
Preference number: 6 (lower is better)
Translates to: GSLLISLQSVWL*GSSQQDCSYLY
Trigger: GTACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGAAATCAGAAGAGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp GAATTGGTCCCAGCACTCGACTCTGCGGCGTCTTCATaGTCTTCCTCACAGGATTCAACATTGTCCTCACTG +
Preference number: 6 (lower is better)
Translates to: ELVPALDSAASS*SSSQDSTLSSL
Trigger: CAGTGAGGACAATGTTGAATCCTGTGAGGAAGACAATGAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp CTGATGAAATCCTTCTTGGAAACAGTTGACATCAGCTaGGCTCGCTTGCGGACGGAGCCTCCTGCTTCCTTA +
Preference number: 6 (lower is better)
Translates to: LMKSFLETVDIS*ARLRTEPPASL
Trigger: TAAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp GGGCTCTCTTCTGATTTCACTTCAGTCTGTCTGGCTTaGGGGCTCTTCCCAGCAGGACTGTTCCTACTTGTA +
Preference number: 6 (lower is better)
Translates to: GLSSDFTSVCLA*GLFPAGLFLLV
Trigger: TACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGACAGACTGAAGTGAAATCAGAAGAGAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp GTCTTTTTGTTAAGGATTTTTGCCATGGCATCTGCCCAGCCTGAATaGGTCCCAGCACTCGACTCTGCGGCGTCTTCATTGTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: VFLLRIFAMASAQPE*VPALDSAASSLSSS
Trigger: TGAGGAAGACAATGAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAAAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp CTGATGAAATCCTTCTTGGAAACAGTTGACATCAGCTTGGCTCGCTaGCGGACGGAGCCTCCTGCTTCCTTAACCTTTTCGCCAACATTC +
Preference number: 6 (lower is better)
Translates to: LMKSFLETVDISLAR*RTEPPASLTFSPTF
Trigger: GAATGTTGGCGAAAAGGTTAAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp CGAAGAACACTGATGAAATCCTTCTTGGAAACAGTTGACATCAGCTaGGCTCGCTTGCGGACGGAGCCTCCTGCTTCCTTAACCTTTTCG +
Preference number: 6 (lower is better)
Translates to: RRTLMKSFLETVDIS*ARLRTEPPASLTFS
Trigger: CGAAAAGGTTAAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGTGTTCTTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 72 bp TTGAAGAGCTGCACCACACCCCTTGTCGCAATCCTCTaGAGGTTCCTCTCTGCCTCTTTGTCTTTGACAACA +
Preference number: 6 (lower is better)
Translates to: LKSCTTPLVAIL*RFLSASLSLTT
Trigger: TGTTGTCAAAGACAAAGAGGCAGAGAGGAACCTTCAGAGGATTGCGACAAGGGGTGTGGTGCAGCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp TCTGAGTCACAGCTTCCTTCTCCATCAGAAGAGTCTTaGACCTCATCTTCTAGCTTCGACGCTGCAGCCTTG +
Preference number: 6 (lower is better)
Translates to: SESQLPSPSEES*TSSSSFDAAAL
Trigger: CAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATGGAGAAGGAAGCTGTGACTCAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp GCGGCGTCTTCATTGTCTTCCTCACAGGATTCAACATaGTCCTCACTGTCTGCTTCTGCAGCTCCATCATCT +
Preference number: 6 (lower is better)
Translates to: AASSLSSSQDST*SSLSASAAPSS
Trigger: AGATGATGGAGCTGCAGAAGCAGACAGTGAGGACAATGTTGAATCCTGTGAGGAAGACAATGAAGACGCCGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp CTACTTGTACCATCCATTCCTCGAAGAACACTGATGAAATCCTTCTaGGAAACAGTTGACATCAGCTTGGCTCGCTTGCGGACGGAGCCT +
Preference number: 6 (lower is better)
Translates to: LLVPSIPRRTLMKSF*ETVDISLARLRTEP
Trigger: AGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGTGTTCTTCGAGGAATGGATGGTACAAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp CCATCCATTCCTCGAAGAACACTGATGAAATCCTTCTaGGAAACAGTTGACATCAGCTTGGCTCGCTTGCGG +
Preference number: 6 (lower is better)
Translates to: PSIPRRTLMKSF*ETVDISLARLR
Trigger: CCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGTGTTCTTCGAGGAATGGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 90 bp TCAGAAGAGTCTTTGACCTCATCTTCTAGCTTCGACGCTGCAGCCTaGGCTACCATCTTCATCTTTTTCTTCTTCTTCGGAGAACGCTTC +
Preference number: 6 (lower is better)
Translates to: SEESLTSSSSFDAAA*ATIFIFFFFFGERF
Trigger: GAAGCGTTCTCCGAAGAAGAAGAAAAAGATGAAGATGGTAGCCAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS TCA 72 bp TCCTTAACCTTTTCGCCAACATTCCTTTGGTGTTTCTaGACAGCATTGAAGAGCTGCACCACACCCCTTGTC +
Preference number: 6 (lower is better)
Translates to: SLTFSPTFLWCF*TALKSCTTPLV
Trigger: GACAAGGGGTGTGGTGCAGCTCTTCAATGCTGTTCAGAAACACCAAAGGAATGTTGGCGAAAAGGTTAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6
CDS CAA 72 bp TCTTTGACCTCATCTTCTAGCTTCGACGCTGCAGCCTaGGCTACCATCTTCATCTTTTTCTTCTTCTTCGGA +
Preference number: 6 (lower is better)
Translates to: SLTSSSSFDAAA*ATIFIFFFFFG
Trigger: TCCGAAGAAGAAGAAAAAGATGAAGATGGTAGCCAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001339.6