Pregenerated sensors for RRP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061032Ensembl transcript IDs: ENSMUST00000062678.11, ENSMUST00000219374.2
Found 121 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACAGGGCCAGCGTTCTCCTCGTCATCCCACGCCTGTTCCTTGTCTaGCTCAGGGCCAGCCCTATGTGCGGTGCCTGCAGGCAGCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: DRASVLLVIPRLFLV*LRASPMCGACRQLL Trigger: AAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGATGACGAGGAGAACGCTGGCCCTGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | CGCCTGTTCCTTGTCTGCCTCAGGGCCAGCCCTATGTGCGGTGCCTaGAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTGCTCACC | + |
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Preference number: 1 (lower is better) Translates to: RLFLVCLRASPMCGA*RQLLGWCVLQILLT Trigger: GGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | GTCATCCCACGCCTGTTCCTTGTCTGCCTCAGGGCCAGCCCTATGTaGGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATC | + |
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Preference number: 1 (lower is better) Translates to: VIPRLFLVCLRASPM*GACRQLLGWCVLQI Trigger: GATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGATGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | CAGAACCTCGGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTaGCCCATTCCACCATGTGCCAGCCTGGGCTGTGCACCTCACTCT | + |
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Preference number: 1 (lower is better) Translates to: QNLGIQRLQEHAQVS*PIPPCASLGCAPHS Trigger: AGAGTGAGGTGCACAGCCCAGGCTGGCACATGGTGGAATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGAGGTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | TCCTCCCCTATAGGACGGACGCTCAGAACCTCGGCATTCAGAGGCTaGAGGAGCATGCCCAGGTATCCTGCCCCATTCCACCATGTGCCA | + |
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Preference number: 1 (lower is better) Translates to: SSPIGRTLRTSAFRG*RSMPRYPAPFHHVP Trigger: TGGCACATGGTGGAATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGAGGTTCTGAGCGTCCGTCCTATAGGGGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | GAATCCTTAGTGCGGGCTGCTATCTGGCAGAAGGGGTCGATGAACTaGAGATTCTGGTCTGCGGTGAGCTCTGCAGCGCCCACTTTGGCC | + |
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Preference number: 1 (lower is better) Translates to: ESLVRAAIWQKGSMN*RFWSAVSSAAPTLA Trigger: GGCCAAAGTGGGCGCTGCAGAGCTCACCGCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | AGGGGTGCTCTGTCTACTGGCGAGCTTGAACAGCCTGTTAGCAAGTaGCTCGTAGTCAAACTGGAGGACAGGGCCAGCGTTCTCCTCGTC | + |
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Preference number: 1 (lower is better) Translates to: RGALSTGELEQPVSK*LVVKLEDRASVLLV Trigger: GACGAGGAGAACGCTGGCCCTGTCCTCCAGTTTGACTACGAGGCACTTGCTAACAGGCTGTTCAAGCTCGCCAGTAGACAGAGCACCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | GCCCTATGTGCGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTaGAGATCCTGCTCACCCTCTGAGGACTTGTTACTGTCACCTTCA | + |
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Preference number: 1 (lower is better) Translates to: ALCAVPAGSFLGGVS*RSCSPSEDLLLSPS Trigger: TGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | GCGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTaGTCACCCTCTGAGGACTTGTTACTGTCACCTTCATCATTGTCA | + |
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Preference number: 1 (lower is better) Translates to: AVPAGSFLGGVSCRS*SPSEDLLLSPSSLS Trigger: TGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR TCA 90 bp | AGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTGCTCACCCTCTaGGGACTTGTTACTGTCACCTTCATCATTGTCACCACCGTCACC | + |
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Preference number: 1 (lower is better) Translates to: RQLLGWCVLQILLTL*GLVTVTFIIVTTVT Trigger: GGTGACGGTGGTGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR CCA 90 bp | GGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTaGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACAA | + |
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Preference number: 1 (lower is better) Translates to: GIYSATQAGLSLQIF*PLWLGSGTAIAYVQ Trigger: TTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR CCA 90 bp | ATGATCTTATGCAAAACCTGGGAATCCTTAGTGCGGGCTGCTATCTaGCAGAAGGGGTCGATGAACTGCAGATTCTGGTCTGCGGTGAGC | + |
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Preference number: 1 (lower is better) Translates to: MILCKTWESLVRAAI*QKGSMNCRFWSAVS Trigger: GCTCACCGCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTCCCAGGTTTTGCATAAGATCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 90 bp | GCTCTGAATGATCTTATGCAAAACCTGGGAATCCTTAGTGCGGGCTaGTATCTGGCAGAAGGGGTCGATGAACTGCAGATTCTGGTCTGC | + |
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Preference number: 1 (lower is better) Translates to: ALNDLMQNLGILSAG*YLAEGVDELQILVC Trigger: GCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTCCCAGGTTTTGCATAAGATCATTCAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR CCA 90 bp | TCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTaGCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGT | + |
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Preference number: 1 (lower is better) Translates to: SATQAGLSLQIFWPL*LGSGTAIAYVQVKC Trigger: ACATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR TCA 90 bp | CATCTGATGCTTCACCCTCTCCACTCTGTGTGTCCAGTTCATTCATaGTGTCTTCTATGGCCAAGGGAGCCTGCTCCACAATCGTCTGAA | + |
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Preference number: 1 (lower is better) Translates to: HLMLHPLHSVCPVHS*CLLWPREPAPQSSE Trigger: TTCAGACGATTGTGGAGCAGGCTCCCTTGGCCATAGAAGACATCATGAATGAACTGGACACACAGAGTGGAGAGGGTGAAGCATCAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR TCA 90 bp | ACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTaGGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: TQLLGFVFLTMVEGS*DRDLLCNPGWTQSP Trigger: TGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTCCGTCCTCCTCCTGCTCCTCCCCTATAGGACGGACGCTCAGAACCTCGGCGAGGCTGCAGGAGCATaGCCAGGTATCCTGCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: SSVLLLLLPYRTDAQNLGEAAGA*PGILPH Trigger: ATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTC...GCCGAGGTTCTGAGCGTCCGTCCTATAGGGGAGGAGCAGGAGGAGGACGGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | GCGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTGCTCACCCCTTCCGTCCTCCTCCTaGTCCTCCCCTATAGGACGG | + |
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Preference number: 2 (lower is better) Translates to: AVPAGSFLGGVSCRSCSPLPSSS*SSPIGR Trigger: CCGTCCTATAGGGGAGGAGCAGGAGGAGGACGGAAG...GGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAAGGCGCTTCCTGTTCTaGGAAGGGGTGCTCTGTCTA | + |
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Preference number: 2 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTRRFLF*EGVLCL Trigger: TAGACAGAGCACCCCTTCTCAGAACAGGAAGCGCCT...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTGGCTAGGACATGCCCAGGTATCCTaGCCCATTCCACCATGTGCC | + |
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Preference number: 2 (lower is better) Translates to: SATQAGLSLQIFWPLWLGHAQVS*PIPPCA Trigger: GGCACATGGTGGAATGGGGCAGGATACCTGGGCATG...TCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | GCACCTCACTCTGCACTCTGTGATGACTGTATCCTCTTCTTGGGTTGCTGGGCCGAGGCTGCAGGAGCATaGCCAGGTATCCTGCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: APHSALCDDCILFLGCWAEAAGA*PGILPH Trigger: ATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTC...GGCCCAGCAACCCAAGAAGAGGATACAGTCATCACAGAGTGCAGAGTGAGGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAATCTTCTGGCCTCTCTaGCTAGGATCAGGCACAGCC | + |
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Preference number: 2 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTIFWPL*LGSGTA Trigger: GGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGAT...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | CTCAGAACCTCGGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTGCCCCATGCAGGTCATGGCTCTaGGGCAGGATCATGCTTAAA | + |
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Preference number: 2 (lower is better) Translates to: LRTSAFRGCRSMPRYPAPCRSWL*GRIMLK Trigger: TTTAAGCATGATCCTGCCTCAGAGCCATGACCTGCA...TGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGAGGTTCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | CCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTATCTTCTGGCCTCTCTaGCTAGGATCAGGCACAGCC | + |
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Preference number: 2 (lower is better) Translates to: PAVYLWAAKGGGDSDHTVIFWPL*LGSGTA Trigger: GGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGAT...AACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACACTCTGCAACCCAGGCTaGACTCAGTCTCCAGATCTT | + |
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Preference number: 2 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTLCNPG*TQSPDL Trigger: AAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAG...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR CAA 90 bp | GACATCATCCTCTGGGAAAGTGCCTCCAGCCAGCTCCCGCAGCTTTaGGATCACTTTGTAGAGGCGCTTCCTGTTCTGAGAAGGGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: DIILWESASSQLPQL*DHFVEALPVLRRGA Trigger: AGCACCCCTTCTCAGAACAGGAAGCGCCTCTACAAAGTGATCCAAAAGCTGCGGGAGCTGGCTGGAGGCACTTTCCCAGAGGATGATGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACAGACAGGGATTTACTCTaGAACCCAGGCTGGACTCAG | + |
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Preference number: 2 (lower is better) Translates to: KDPQFICGQPRVEGTVTTDRDLL*NPGWTQ Trigger: CTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTC...TGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACAAGCAGCTCTAGCAGCTaGTCAATCTGTCTCTCGTCC | + |
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Preference number: 2 (lower is better) Translates to: KDPQFICGQPRVEGTVTTSSSSS*SICLSS Trigger: GGACGAGAGACAGATTGAGCAGCTGCTAGAGCTGCT...TGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGGACAGGGATTTACTCTaGAACCCAGGCTGGACTCAG | + |
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Preference number: 2 (lower is better) Translates to: REAETGIYSATQAGLSLQDRDLL*NPGWTQ Trigger: CTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTC...CTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGAGGTTCAGGATCTCGGTaGTTAGCAGCTCTAGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: GKLRQGFTLQPRLDSVSRGSGSR*LAALAA Trigger: AGCTGCTAGAGCTGCTAACCACCGAGATCCTGAACC...TCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | GACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTGGTTTTGTTTTCCTaGCTATGGTGGAGGGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: DPQFICGQPRVEGTVTTQLVLFS*LWWREA Trigger: AGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAA...CTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGCTCTGAGGCAGGATCATGCTTAAAGGCTGGGACTAAACCAAGAGTTTCTCTTCCGTCCTCCTCCTaGTCCTCCCCTATAGGACGG | + |
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Preference number: 2 (lower is better) Translates to: HGSEAGSCLKAGTKPRVSLPSSS*SSPIGR Trigger: CCGTCCTATAGGGGAGGAGCAGGAGGAGGACGGAAG...AGAAACTCTTGGTTTAGTCCCAGCCTTTAAGCATGATCCTGCCTCAGAGCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | CATGGCTCTGAGGCAGGATCATGCTTAAAGGCTGGGACTAAACCAAGAGTTTCTCACCATGTGCCAGCCTaGGCTGTGCACCTCACTCTG | + |
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Preference number: 2 (lower is better) Translates to: HGSEAGSCLKAGTKPRVSHHVPA*AVHLTL Trigger: CAGAGTGAGGTGCACAGCCCAGGCTGGCACATGGTG...AGAAACTCTTGGTTTAGTCCCAGCCTTTAAGCATGATCCTGCCTCAGAGCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR CAA 90 bp | TTCTTGGGTGGTGTGTCTTGCAGATCCTGCTCACCCTCTGAGGACTaGTTACTGTCACCTTCATCATTGTCACCACCGTCACCGTCTGAC | + |
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Preference number: 2 (lower is better) Translates to: FLGGVSCRSCSPSED*LLSPSSLSPPSPSD Trigger: GTCAGACGGTGACGGTGGTGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | TGCAGATCCTGCTCACCCTCTGAGGACTTGTTACTGTCACCTTCATCATTGTCACATGCCCAGGTATCCTaGCCCATTCCACCATGTGCC | + |
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Preference number: 2 (lower is better) Translates to: CRSCSPSEDLLLSPSSLSHAQVS*PIPPCA Trigger: GGCACATGGTGGAATGGGGCAGGATACCTGGGCATG...TGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTGAGACAGGGAGTGCGGGCTGCTATCTaGCAGAAGGGGTCGATGAAC | + |
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Preference number: 2 (lower is better) Translates to: TVTWFCFPDYGGGKLRQGVRAAI*QKGSMN Trigger: GTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCAC...TCCCTGTCTCAGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGTGCAGGTCATGGCTCTaGGGCAGGATCATGCTTAAA | + |
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Preference number: 2 (lower is better) Translates to: LASLARIRHSHSICTSEMCRSWL*GRIMLK Trigger: TTTAAGCATGATCCTGCCTCAGAGCCATGACCTGCA...CATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | AGCGCTTCTTTTTCTTCTTCCGTTCCCGCCTCCCTTCCAGCATCTTCTTGTAGGTTGGTTTTGTTTTCCTaGCTATGGTGGAGGGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: SASFSSSVPASLPASSCRLVLFS*LWWREA Trigger: AGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAA...CCTACAAGAAGATGCTGGAAGGGAGGCGGGAACGGAAGAAGAAAAAGAAGCGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTACTTGGTTTTGTTTTAGGACCATCCTCATaGGCATGTAGAACTTATCCA | + |
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Preference number: 2 (lower is better) Translates to: CGQPRVEGTVTTQLLGFVLGPSS*ACRTYP Trigger: TGGATAAGTTCTACATGCTCATGAGGATGGTCCTAA...AACAAAACCAAGTAACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR-3UTR GCA 90 bp | GCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGTTGAGTGTTTTTTCGGCATTCAGAGGCTaGAGGAGCATGCCCAGGTAT | + |
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Preference number: 2 (lower is better) Translates to: ARIRHSHSICTSEMLSVFSAFRG*RSMPRY Trigger: ATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGA...AAAAACACTCAACATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTTGCCCTAGCCCCGGGCTTCCTCCTCTTCCCAGGAGGACCCCCTTGGCCATCCCACGCCTGTTCCTaGTCTGCCTCAGGGCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: PFALAPGFLLFPGGPPWPSHACS*SASGPA Trigger: GGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGA...TGGCCAAGGGGGTCCTCCTGGGAAGAGGAGGAAGCCCGGGGCTAGGGCAAAGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 72 bp | CGCCTGTTCCTTGTCTGCCTCAGGGCCAGCCCTATGTaGGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: RLFLVCLRASPM*GACRQLLGWCV Trigger: GACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 72 bp | AGCGTTCTCCTCGTCATCCCACGCCTGTTCCTTGTCTaGCTCAGGGCCAGCCCTATGTGCGGTGCCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SVLLVIPRLFLV*LRASPMCGACR Trigger: CCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGATGACGAGGAGAACGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 72 bp | GTGCGGGCTGCTATCTGGCAGAAGGGGTCGATGAACTaGAGATTCTGGTCTGCGGTGAGCTCTGCAGCGCCC | + |
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Preference number: 3 (lower is better) Translates to: VRAAIWQKGSMN*RFWSAVSSAAP Trigger: GGGCGCTGCAGAGCTCACCGCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR CCA 72 bp | GGCCAGCCCTATGTGCGGTGCCTGCAGGCAGCTTCTTaGGTGGTGTGTCTTGCAGATCCTGCTCACCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: GQPYVRCLQAAS*VVCLADPAHPL Trigger: CAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| 3UTR GCA 72 bp | CTGGCAGAAGGGGTCGATGAACTGCAGATTCTGGTCTaGGGTGAGCTCTGCAGCGCCCACTTTGGCCAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: LAEGVDELQILV*GELCSAHFGQL Trigger: GAGCTGGCCAAAGTGGGCGCTGCAGAGCTCACCGCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | CTTGTCTGCCTCAGGGCCAGCCCTATGTGCGGTGCCTaGAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATC | + |
|
Preference number: 3 (lower is better) Translates to: LVCLRASPMCGA*RQLLGWCVLQI Trigger: GATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | GTTCCTTGTCTGCCTCAGGGCCAGCCCTATGTGCGGTaGCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTGCA | + |
|
Preference number: 3 (lower is better) Translates to: VPCLPQGQPYVR*LQAASWVVCLA Trigger: TGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR CCA 72 bp | CACTGGGGGCCTGGCTGTCGGGGTTCAGGATCTCGGTaGTTAGCAGCTCTAGCAGCTGCTCAATCTGTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: HWGPGCRGSGSR*LAALAAAQSVS Trigger: AGAGACAGATTGAGCAGCTGCTAGAGCTGCTAACCACCGAGATCCTGAACCCCGACAGCCAGGCCCCCAGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR CCA 72 bp | GCTATCTGGCAGAAGGGGTCGATGAACTGCAGATTCTaGTCTGCGGTGAGCTCTGCAGCGCCCACTTTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: AIWQKGSMNCRF*SAVSSAAPTLA Trigger: GGCCAAAGTGGGCGCTGCAGAGCTCACCGCAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | GGGTTCAGGATCTCGGTGGTTAGCAGCTCTAGCAGCTaGTCAATCTGTCTCTCGTCCCATCCCCGGGCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: GFRISVVSSSSS*SICLSSHPRAF Trigger: GAAAGCCCGGGGATGGGACGAGAGACAGATTGAGCAGCTGCTAGAGCTGCTAACCACCGAGATCCTGAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | GCGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTaGAGATCCTGCTCACCCTCTGAGGACTTGTTACTG | + |
|
Preference number: 3 (lower is better) Translates to: AVPAGSFLGGVS*RSCSPSEDLLL Trigger: CAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | CTGGGACTAAACCAAGAGTTTCTTCCGTCCTCCTCCTaGTCCTCCCCTATAGGACGGACGCTCAGAACCTCG | + |
|
Preference number: 3 (lower is better) Translates to: LGLNQEFLPSSS*SSPIGRTLRTS Trigger: CGAGGTTCTGAGCGTCCGTCCTATAGGGGAGGAGCAGGAGGAGGACGGAAGAAACTCTTGGTTTAGTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| 3UTR-3UTR CAA 90 bp | CAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTACTTTCTGCAGCGCCCACTTaGGCCAGCTCCTCCAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: QFICGQPRVEGTVTTQLLSAAPT*ASSSRK Trigger: CTTTCTGGAGGAGCTGGCCAAAGTGGGCGCTGCAGA...AAGTAACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | CTGTCTACTGGCGAGCTTGAACAGCCTGTTAGCAAGTaGCTCGTAGTCAAACTGGAGGACAGGGCCAGCGTT | + |
|
Preference number: 3 (lower is better) Translates to: LSTGELEQPVSK*LVVKLEDRASV Trigger: AACGCTGGCCCTGTCCTCCAGTTTGACTACGAGGCACTTGCTAACAGGCTGTTCAAGCTCGCCAGTAGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | GCAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTaGTCACCCTCTGAGGACTTGTTACTGTCACCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: AGSFLGGVSCRS*SPSEDLLLSPS Trigger: TGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | TGTAGGCTTTTTCAGGGACATCATCCTCTGGGAAAGTaGCTCCAGCCAGCTCCCGCAGCTTTTGGATCACTT | + |
|
Preference number: 3 (lower is better) Translates to: CRLFQGHHPLGK*LQPAPAAFGSL Trigger: AAGTGATCCAAAAGCTGCGGGAGCTGGCTGGAGGCACTTTCCCAGAGGATGATGTCCCTGAAAAAGCCTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR CCA 72 bp | CAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTaGCTAGGATCAGGCACAGCCATAGCATATGTACAA | + |
|
Preference number: 3 (lower is better) Translates to: QAGLSLQIFWPL*LGSGTAIAYVQ Trigger: TTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| 3UTR CCA 72 bp | TGCAAAACCTGGGAATCCTTAGTGCGGGCTGCTATCTaGCAGAAGGGGTCGATGAACTGCAGATTCTGGTCT | + |
|
Preference number: 3 (lower is better) Translates to: CKTWESLVRAAI*QKGSMNCRFWS Trigger: AGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTCCCAGGTTTTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR-3UTR CAA 90 bp | GCGGTGCCTGCAGGCAGCTTCTTGGGTGGTGTGTCTTGCAGATCCTGCTCACCCTGTACAAGTGAAATGTaGAGTGTTTTTCTGAGATGC | + |
|
Preference number: 3 (lower is better) Translates to: AVPAGSFLGGVSCRSCSPCTSEM*SVFLRC Trigger: GCATCTCAGAAAAACACTCAACATTTCACTTGTACA...GGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGGCACCGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR-3UTR CAA 90 bp | CTCCTCCTGCTCCTCCCCTATAGGACGGACGCTCAGAACCTCGGCATTCAGAGGTGTACAAGTGAAATGTaGAGTGTTTTTCTGAGATGC | + |
|
Preference number: 3 (lower is better) Translates to: LLLLLPYRTDAQNLGIQRCTSEM*SVFLRC Trigger: GCATCTCAGAAAAACACTCAACATTTCACTTGTACA...CCTCTGAATGCCGAGGTTCTGAGCGTCCGTCCTATAGGGGAGGAGCAGGAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| 3UTR TCA 72 bp | CTTCACCCTCTCCACTCTGTGTGTCCAGTTCATTCATaGTGTCTTCTATGGCCAAGGGAGCCTGCTCCACAA | + |
|
Preference number: 3 (lower is better) Translates to: LHPLHSVCPVHS*CLLWPREPAPQ Trigger: TTGTGGAGCAGGCTCCCTTGGCCATAGAAGACATCATGAATGAACTGGACACACAGAGTGGAGAGGGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR TCA 72 bp | CTTGGGTGGTGTGTCTTGCAGATCCTGCTCACCCTCTaGGGACTTGTTACTGTCACCTTCATCATTGTCACC | + |
|
Preference number: 3 (lower is better) Translates to: LGWCVLQILLTL*GLVTVTFIIVT Trigger: GGTGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| 3UTR GCA 72 bp | GATCTTATGCAAAACCTGGGAATCCTTAGTGCGGGCTaGTATCTGGCAGAAGGGGTCGATGAACTGCAGATT | + |
|
Preference number: 3 (lower is better) Translates to: DLMQNLGILSAG*YLAEGVDELQI Trigger: AATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTCCCAGGTTTTGCATAAGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| CDS-3UTR GCA 90 bp | TCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTGGCTAGGATTGCCCGCCAGGCGCTaGGCCAGCTGGATCTCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: SATQAGLSLQIFWPLWLGLPARR*ASWISG Trigger: GCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAA...TCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR GCA 90 bp | GGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTGCCCCATTCCACCATGTGCGTCACCTGTTCATTaGCCGCCAGGCGCTGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: GIQRLQEHAQVSCPIPPCASPVH*PPGAAP Trigger: TGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGC...ACATGGTGGAATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR CCA 90 bp | CTCAGAACCTCGGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTGCCCCACTCTTCTTGGGTTGCTaGGCCCCAGCCCCCTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: LRTSAFRGCRSMPRYPAPLFLGC*APAPFA Trigger: GGCAAAGGGGGCTGGGGCCCAGCAACCCAAGAAGAG...TGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGAGGTTCTGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | AAGGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACAGCGTCACCTGTTCATTaGCCGCCAGGCGCTGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: KDPQFICGQPRVEGTVTTASPVH*PPGAAP Trigger: TGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGC...TGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR GCA 90 bp | GACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGCAGCCCTATGTGCGGTaGCTGCAGGCAGCTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: DPQFICGQPRVEGTVTTQQPYVR*LQAASW Trigger: CCAAGAAGCTGCCTGCAGGCACCGCACATAGGGCTG...CTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| 3UTR CAA 72 bp | CCTCACTCTGCACTCTGTGATGACTGTATCCTCTTCTaGGGTTGCTGGGCCCCAGCCCCCTTTGCCCTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PHSALCDDCILF*GCWAPAPFALA Trigger: GGCTAGGGCAAAGGGGGCTGGGGCCCAGCAACCCAAGAAGAGGATACAGTCATCACAGAGTGCAGAGTGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| CDS-3UTR CCA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTGCGGGCTGCTATCTaGCAGAAGGGGTCGATGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTVRAAI*QKGSMN Trigger: GTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCAC...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR CCA 90 bp | AAGGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACCCACTCCCGGATCATaGTCTGCCAGAAGGCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KDPQFICGQPRVEGTVTTPTPGS*SARRPS Trigger: TGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGG...TGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR CCA 90 bp | CTCAGAACCTCGGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTGCCCCAGGTTCAGGATCTCGGTaGTTAGCAGCTCTAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LRTSAFRGCRSMPRYPAPGSGSR*LAALAA Trigger: AGCTGCTAGAGCTGCTAACCACCGAGATCCTGAACC...TGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCCGAGGTTCTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | CACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTGAGACAGTTGCCCGCCAGGCGCTaGGCCAGCTGGATCTCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: HTVTWFCFPDYGGGKLRQLPARR*ASWISG Trigger: GCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAA...CTGTCTCAGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR GCA 90 bp | GGCATTCAGAGGCTGCAGGAGCATGCCCAGGTATCCTGCCCCATTCCACCATGTAAGGGGTCGATGAACTaGAGATTCTGGTCTGCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GIQRLQEHAQVSCPIPPCKGSMN*RFWSAV Trigger: CACCGCAGACCAGAATCTGCAGTTCATCGACCCCTT...ACATGGTGGAATGGGGCAGGATACCTGGGCATGCTCCTGCAGCCTCTGAATGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | GATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTGGCAGTTCATCTGGAGTaGAACCACCTGTCGCCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: DLLCNPGWTQSPDLLASLAVHLE*NHLSPA Trigger: AGCGGGCGACAGGTGGTTTCACTCCAGATGAACTGC...CAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACACAGCCTGTTAGCAAGTaGCTCGTAGTCAAACTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTQPVSK*LVVKLE Trigger: CTCCAGTTTGACTACGAGGCACTTGCTAACAGGCTG...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR CCA 90 bp | CAGTCTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATACTGCAGCGCCCACTTTaGCCAGCTCCTCCAGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: QSPDLLASLARIRHSHSILQRPL*PAPPER Trigger: TCTTTCTGGAGGAGCTGGCCAAAGTGGGCGCTGCAG...TATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | GAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGATCAGGCGCTTCCTGTTCTaGGAAGGGGTGCTCTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: EAETGIYSATQAGLSLQIRRFLF*EGVLCL Trigger: TAGACAGAGCACCCCTTCTCAGAACAGGAAGCGCCT...GATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | CTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTAGGCAGAAGGGGTCGATaGACTGCAGATTCTGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LQIFWPLWLGSGTAIAYVGRRGR*TADSGL Trigger: CAGACCAGAATCTGCAGTTCATCGACCCCTTCTGCC...TACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | CTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTAACCACCGTCACCGTCTaGCACGTCACCATCATCATC | + |
|
Preference number: 4 (lower is better) Translates to: LQIFWPLWLGSGTAIAYVTTVTV*HVTIII Trigger: GATGATGATGGTGACGTGTCAGACGGTGACGGTGGT...TACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | GAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGATCATCCTGCTCACCCTCTaGGGACTTGTTACTGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: EAETGIYSATQAGLSLQIILLTL*GLVTVT Trigger: GGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGAT...GATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR TCA 90 bp | CCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACATCCTTATTCTGGGGCTaGGGTTTGGGCAAGCGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PDLLASLARIRHSHSICTSLFWG*GLGKRF Trigger: GAAGCGCTTGCCCAAACCTCAGCCCCAGAATAAGGA...TGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | TGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTACTTGGTTTTGTTTTGGGTGGTGTGTCTTaGAGATCCTGCTCACCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: CGQPRVEGTVTTQLLGFVLGGVS*RSCSPS Trigger: AGAGGGTGAGCAGGATCTGCAAGACACACCACCCAA...AACAAAACCAAGTAACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR CCA 90 bp | TTTACTCTGCAACCCAGGCTGGACTCAGTCTCCAGATCTTCTGGCCTCTCTGGCGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FTLQPRLDSVSRSSGLSGGQAGQ*SFLVLP Trigger: AGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCC...GCCAGAGAGGCCAGAAGATCTGGAGACTGAGTCCAGCCTGGGTTGCAGAGTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR GCA 90 bp | CCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACAAGCAGCTCTAGCAGCTaGTCAATCTGTCTCTCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: PDLLASLARIRHSHSICTSSSSS*SICLSS Trigger: GGACGAGAGACAGATTGAGCAGCTGCTAGAGCTGCT...TGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | ACAGTGACCACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCCATCCTCTGGGAAAGTaGCTCCAGCCAGCTCCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: TVTTQLLGFVFLTMVEGSHPLGK*LQPAPA Trigger: TGCGGGAGCTGGCTGGAGGCACTTTCCCAGAGGATG...GCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTGGTCACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR CCA 90 bp | CTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTAAAGATCTCTAGGAAGTaGCTCTTCACCCCACTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LQIFWPLWLGSGTAIAYVKISRK*LFTPLG Trigger: CCCCAGTGGGGTGAAGAGCCACTTCCTAGAGATCTT...TACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR CCA 90 bp | CTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTATCTGGGGCTGAGGTTTaGGCAAGCGCTTCTTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LQIFWPLWLGSGTAIAYVSGAEV*ASASFS Trigger: AGAAAAAGAAGCGCTTGCCCAAACCTCAGCCCCAGA...TACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| 3UTR CAA 72 bp | GGTGTGTCTTGCAGATCCTGCTCACCCTCTGAGGACTaGTTACTGTCACCTTCATCATTGTCACCACCGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GVSCRSCSPSED*LLSPSSLSPPS Trigger: TGACGGTGGTGACAATGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
||
| CDS-3UTR CCA 90 bp | GATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: DLLASLARIRHSHSICTSGQAGQ*SFLVLP Trigger: AGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCC...ACTTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
||
| CDS-3UTR TCA 90 bp | GTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTACTTGGTTAGGACCATCCTCATaGGCATGTAGAACTTATCCA | + |
|
Preference number: 4 (lower is better) Translates to: VYLWAAKGGGDSDHTVTWLGPSS*ACRTYP Trigger: TGGATAAGTTCTACATGCTCATGAGGATGGTCCTAA...CCAAGTAACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
||
| CDS-3UTR GCA 90 bp | GCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGTTGAGTGTTTTTCGCCTGTTCCTTGTCTaGCTCAGGGCCAGCCCTATG | + |
|
Preference number: 4 (lower is better) Translates to: ARIRHSHSICTSEMLSVFRLFLV*LRASPM Trigger: CATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCG...AAAAACACTCAACATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CCA 90 bp | GCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGTTGAGTGTTTTTCCCACTCCCGGATCATaGTCTGCCAGAAGGCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: ARIRHSHSICTSEMLSVFPTPGS*SARRPS Trigger: TGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGG...AAAAACACTCAACATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS-3UTR CCA 90 bp | GGGACAGTGACCACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAATCTTATGCAAAACCTaGGAATCCTTAGTGCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GTVTTQLLGFVFLTMVEGILCKT*ESLVRA Trigger: AGCCCGCACTAAGGATTCCCAGGTTTTGCATAAGAT...TCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTGGTCACTGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR TCA 90 bp | ACAGTGACCACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTGTCCAGTTCATTCATaGTGTCTTCTATGGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: TVTTQLLGFVFLTMVEGSCPVHS*CLLWPR Trigger: CCTTGGCCATAGAAGACATCATGAATGAACTGGACA...GCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTGGTCACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR GCA 90 bp | CACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTGAGACAGTGTCCTGCATCCACATaGAGTAAAACAGTCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: HTVTWFCFPDYGGGKLRQCPAST*SKTVLS Trigger: GGAAAGGACTGTTTTACTGCATGTGGATGCAGGACA...CTGTCTCAGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS GCA 90 bp | ACTTCCGCAGCTTCCGCAACGCGCGGTCCCGCGTCACCTGTTCATTaGCCGCCAGGCGCTGCGCCAGCTGGATCTCCGGCGGGAGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: TSAASATRGPASPVH*PPGAAPAGSPAGAA Trigger: TGCCGCTCCCGCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCGGGACCGCGCGTTGCGGAAGCTGCGGAAGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS-3UTR CAA 90 bp | TGGAGGGAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCCGCGTCACCTGTTCATaGCCCGCCAGGCGCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: WREAETGIYSATQAGLSLRVTCS*PARRCA Trigger: GGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCG...GAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTCCCTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS-3UTR CAA 90 bp | GCACCTCACTCTGCACTCTGTGATGACTGTATCCTCTTCTTGGGTTGCTGGGCCCGCGTCACCTGTTCATaGCCCGCCAGGCGCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: APHSALCDDCILFLGCWARVTCS*PARRCA Trigger: GGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCG...GGCCCAGCAACCCAAGAAGAGGATACAGTCATCACAGAGTGCAGAGTGAGGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| CDS-3UTR CAA 90 bp | GGACCCGCAGTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACATCCCACGCCTGTTCCTaGTCTGCCTCAGGGCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GPAVYLWAAKGGGDSDHTSHACS*SASGPA Trigger: GGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGA...TGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAACTGCGGGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS CCA 90 bp | GGTGCTGTGCCTCCGTCGTGTGAAAAGCATGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCTGTCGCCCGCTGCGACCTGGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: GAVPPSCEKHGQAGQ*SFLVLPVARCDLAS Trigger: CGAGGCCAGGTCGCAGCGGGCGACAGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGGCACAGCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| CDS-3UTR CAA 90 bp | TCTTCCGTCCTCCTCCTGCTCCTCCCCTATAGGACGGACGCTCAGAACCTCGGCCCTGCAGGCAGCTTCTaGGGTGGTGTGTCTTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: SSVLLLLLPYRTDAQNLGPAGSF*GGVSCR Trigger: TCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGG...GCCGAGGTTCTGAGCGTCCGTCCTATAGGGGAGGAGCAGGAGGAGGACGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS CCA 90 bp | ACTTATCCAGGCGCAGTCTGTCAATGCCCACCCACTCCCGGATCATaGTCTGCCAGAAGGCCTTCAGGAACTGGTGCTGTGCCTCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: TYPGAVCQCPPTPGS*SARRPSGTGAVPPS Trigger: CGACGGAGGCACAGCACCAGTTCCTGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGGTGGGCATTGACAGACTGCGCCTGGATAAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS CCA 90 bp | GGTGCTGTGCCTCCGTCGTGTGAAAAGCATGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCTGCTGGAGGGGCTTGTCCTGCATCC | + |
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Preference number: 5 (lower is better) Translates to: GAVPPSCEKHGQAGQ*SFLVLPAGGACPAS Trigger: GGATGCAGGACAAGCCCCTCCAGCAGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGGCACAGCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | TGGAGGGAAGCTGAGACAGGGATTTACTCTGCAACCCAGGCTGGACTCAGTCTCGGCCTGGGTCTGCACTaGAGGATTCTGCCTCACTCC | + |
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Preference number: 5 (lower is better) Translates to: WREAETGIYSATQAGLSLGLGLH*RILPHS Trigger: GGAGTGAGGCAGAATCCTCAAGTGCAGACCCAGGCC...GAGACTGAGTCCAGCCTGGGTTGCAGAGTAAATCCCTGTCTCAGCTTCCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | GTTTATTTGTGGGCAGCCAAGGGTGGAGGGGACAGTGACCACACAGTTACTTGGGACTGTATCCTCTTCTaGGGTTGCTGGGCCCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: VYLWAAKGGGDSDHTVTWDCILF*GCWAPA Trigger: GGCTGGGGCCCAGCAACCCAAGAAGAGGATACAGTC...CCAAGTAACTGTGTGGTCACTGTCCCCTCCACCCTTGGCTGCCCACAAATAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | CTCCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTATCTGCAGCGCCCACTTaGGCCAGCTCCTCCAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: LQIFWPLWLGSGTAIAYVSAAPT*ASSSRK Trigger: CTTTCTGGAGGAGCTGGCCAAAGTGGGCGCTGCAGA...TACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | CTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACAAGTGAAATGTATCCTCTTCTTGGGTaGCTGGGCCCCAGCCCCCTT | + |
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Preference number: 5 (lower is better) Translates to: LASLARIRHSHSICTSEMYPLLG*LGPSPL Trigger: AAGGGGGCTGGGGCCCAGCAACCCAAGAAGAGGATA...CATTTCACTTGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | CACACAGTTACTTGGTTTTGTTTTCCTGACTATGGTGGAGGGAAGCTGAGACAGTCCTGCTGGAGGGGCTaGTCCTGCATCCACATGCAG | + |
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Preference number: 5 (lower is better) Translates to: HTVTWFCFPDYGGGKLRQSCWRG*SCIHMQ Trigger: CTGCATGTGGATGCAGGACAAGCCCCTCCAGCAGGA...CTGTCTCAGCTTCCCTCCACCATAGTCAGGAAAACAAAACCAAGTAACTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS-3UTR CAA 90 bp | CCAGATCTTCTGGCCTCTCTGGCTAGGATCAGGCACAGCCATAGCATATGTACATCACCCTCTGAGGACTaGTTACTGTCACCTTCATCA | + |
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Preference number: 5 (lower is better) Translates to: PDLLASLARIRHSHSICTSPSED*LLSPSS Trigger: TGATGAAGGTGACAGTAACAAGTCCTCAGAGGGTGA...TGTACATATGCTATGGCTGTGCCTGATCCTAGCCAGAGAGGCCAGAAGATCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS GCA 72 bp | CGGTCCCGCGTCACCTGTTCATTGCCCGCCAGGCGCTaGGCCAGCTGGATCTCCGGCGGGAGCGGCACTCCG | + |
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Preference number: 6 (lower is better) Translates to: RSRVTCSLPARR*ASWISGGSGTP Trigger: CGGAGTGCCGCTCCCGCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCGGGACCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS GCA 72 bp | GCTTCCGCAACGCGCGGTCCCGCGTCACCTGTTCATTaGCCGCCAGGCGCTGCGCCAGCTGGATCTCCGGCG | + |
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Preference number: 6 (lower is better) Translates to: ASATRGPASPVH*PPGAAPAGSPA Trigger: CGCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCGGGACCGCGCGTTGCGGAAGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS CAA 90 bp | TACTTCCGCAGCTTCCGCAACGCGCGGTCCCGCGTCACCTGTTCATaGCCCGCCAGGCGCTGCGCCAGCTGGATCTCCGGCGGGAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: YFRSFRNARSRVTCS*PARRCASWISGGSG Trigger: GCCGCTCCCGCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCGGGACCGCGCGTTGCGGAAGCTGCGGAAGTA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS CAA 72 bp | AGCTTCCGCAACGCGCGGTCCCGCGTCACCTGTTCATaGCCCGCCAGGCGCTGCGCCAGCTGGATCTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: SFRNARSRVTCS*PARRCASWISG Trigger: GCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGACGCGGGACCGCGCGTTGCGGAAGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS CCA 72 bp | GGCGCAGTCTGTCAATGCCCACCCACTCCCGGATCATaGTCTGCCAGAAGGCCTTCAGGAACTGGTGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GAVCQCPPTPGS*SARRPSGTGAV Trigger: CACAGCACCAGTTCCTGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGGTGGGCATTGACAGACTGCGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS GCA 72 bp | AGTCTGTCAATGCCCACCCACTCCCGGATCATGGTCTaGCAGAAGGCCTTCAGGAACTGGTGCTGTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SLSMPTHSRIMV*QKAFRNWCCAS Trigger: GGAGGCACAGCACCAGTTCCTGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGGTGGGCATTGACAGACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS CCA 72 bp | CCTCCGTCGTGTGAAAAGCATGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCTGTCGCCCGCTGCGAC | + |
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Preference number: 6 (lower is better) Translates to: PPSCEKHGQAGQ*SFLVLPVARCD Trigger: GTCGCAGCGGGCGACAGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219374.2 |
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| CDS TCA 72 bp | AAGGCCTTCAGGAACTGGTGCTGTGCCTCCGTCGTGTaGAAAGCATGGACAAGCTGGGCAATGGTCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: KAFRNWCCASVV*KAWTSWAMVLP Trigger: AGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGGCACAGCACCAGTTCCTGAAGGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062678.11 ENSMUST00000219374.2 |
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| CDS CCA 72 bp | CCTCCGTCGTGTGAAAAGCATGGACAAGCTGGGCAATaGTCCTTCCTAGTTCTTCCTGCTGGAGGGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: PPSCEKHGQAGQ*SFLVLPAGGAC Trigger: ACAAGCCCCTCCAGCAGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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| CDS TCA 72 bp | TCACAGCCTTCAGTGACTCACTTAGGACCATCCTCATaGGCATGTAGAACTTATCCAGGCGCAGTCTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: SQPSVTHLGPSS*ACRTYPGAVCQ Trigger: TTGACAGACTGCGCCTGGATAAGTTCTACATGCTCATGAGGATGGTCCTAAGTGAGTCACTGAAGGCTGTGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062678.11 |
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