Pregenerated sensors for RRN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022682Ensembl transcript IDs: ENSMUST00000023363.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCGTGTTGTGCAGGCTGTGGAATGCTCGACAGACCCCCAGGCCTaGTTCAGTCGGCCTGAGCTGCAGCTAGGTCTCTGGGGACTCCTG | + |
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Preference number: 1 (lower is better) Translates to: VRVVQAVECSTDPQA*FSRPELQLGLWGLL Trigger: CAGGAGTCCCCAGAGACCTAGCTGCAGCTCAGGCCGACTGAAGCAGGCCTGGGGGTCTGTCGAGCATTCCACAGCCTGCACAACACGGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 90 bp | GGCTGTGGAATGCTCGACAGACCCCCAGGCCTGCTTCAGTCGGCCTaGGCTGCAGCTAGGTCTCTGGGGACTCCTGCACAAGGACCTTGT | + |
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Preference number: 1 (lower is better) Translates to: GCGMLDRPPGLLQSA*AAARSLGTPAQGPC Trigger: ACAAGGTCCTTGTGCAGGAGTCCCCAGAGACCTAGCTGCAGCTCAGGCCGACTGAAGCAGGCCTGGGGGTCTGTCGAGCATTCCACAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 90 bp | CCTCTCTTCCCGCCTGACTCCTCTGCAGCCCTTGGTGTCCCTCAGTaGAGCCCAAATGTTCAGCTTTGCCTGCTTGGCTCTCCCCACGCA | + |
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Preference number: 1 (lower is better) Translates to: PLFPPDSSAALGVPQ*SPNVQLCLLGSPHA Trigger: TGCGTGGGGAGAGCCAAGCAGGCAAAGCTGAACATTTGGGCTTCACTGAGGGACACCAAGGGCTGCAGAGGAGTCAGGCGGGAAGAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 90 bp | CTGCACAAGGACCTTGTGTGCTTCTCCGACTCCTCTCTTCCCGCCTaGCTCCTCTGCAGCCCTTGGTGTCCCTCAGTGAAGCCCAAATGT | + |
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Preference number: 1 (lower is better) Translates to: LHKDLVCFSDSSLPA*LLCSPWCPSVKPKC Trigger: ACATTTGGGCTTCACTGAGGGACACCAAGGGCTGCAGAGGAGTCAGGCGGGAAGAGAGGAGTCGGAGAAGCACACAAGGTCCTTGTGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR GCA 90 bp | GAAACCTGTCAGAAGGCCACTTGCCAGGTTGTGGCTGATACAGCATaGAGCCAGCAGGCCACAGGCAAGACTGTGAAATACTGTGAAATG | + |
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Preference number: 1 (lower is better) Translates to: ETCQKATCQVVADTA*SQQATGKTVKYCEM Trigger: CATTTCACAGTATTTCACAGTCTTGCCTGTGGCCTGCTGGCTGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCTTCTGACAGGTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 90 bp | CTAATAAAAAGAAACCTGTCAGAAGGCCACTTGCCAGGTTGTGGCTaGTACAGCATGCAGCCAGCAGGCCACAGGCAAGACTGTGAAATA | + |
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Preference number: 1 (lower is better) Translates to: LIKRNLSEGHLPGCG*YSMQPAGHRQDCEI Trigger: TATTTCACAGTCTTGCCTGTGGCCTGCTGGCTGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCTTCTGACAGGTTTCTTTTTATTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 90 bp | AAGACTGTGAAATACTGTGAAATGTCCACTGTGAAATACTGCCTATaGCACTCAGTTTTTCCCTATGTCAACAGGGAGCAAACTGCAAGC | + |
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Preference number: 1 (lower is better) Translates to: KTVKYCEMSTVKYCL*HSVFPYVNREQTAS Trigger: GCTTGCAGTTTGCTCCCTGTTGACATAGGGAAAAACTGAGTGTCATAGGCAGTATTTCACAGTGGACATTTCACAGTATTTCACAGTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 90 bp | CTTATTTGTCAACATACCTTCTACATTCTAGCTACTTTCCAAGCCTaGCATCCCATCAGTATCTATGGATGCAATTTCATTCCATTTTCA | + |
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Preference number: 1 (lower is better) Translates to: LICQHTFYILATFQA*HPISIYGCNFIPFS Trigger: TGAAAATGGAATGAAATTGCATCCATAGATACTGATGGGATGCCAGGCTTGGAAAGTAGCTAGAATGTAGAAGGTATGTTGACAAATAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CCA 90 bp | TGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTTTCAGTGTGGGGTCGGGGTaGAACACAGGGTCACAGGGC | + |
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Preference number: 2 (lower is better) Translates to: CIGVSREAPGELGCTFIFSVGSG*NTGSQG Trigger: GCCCTGTGACCCTGTGTTCCACCCCGACCCCACACT...GAAAATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CCA 90 bp | TGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTTTCTCAGCTTTGCCTGCTTaGCTCTCCCCACGCACCCCA | + |
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Preference number: 2 (lower is better) Translates to: CIGVSREAPGELGCTFIFSALPA*LSPRTP Trigger: TGGGGTGCGTGGGGAGAGCCAAGCAGGCAAAGCTGA...GAAAATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTAGTTTCCTAGTGACTTaGCACCAAGGCTGGCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: TCIGVSREAPGELGCTFISFLVT*HQGWPG Trigger: TCCAGGCCAGCCTTGGTGGCAAGTCACTAGGAAACT...AATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CAA 90 bp | TTTAATCCCAGTGCTCGGGAGGCAGAGACAGGCGGATTTCTGAGTTaGAGGCCAGCTGGTCTACAGCCAGAGCTAAACAGAGAAACCCTG | + |
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Preference number: 2 (lower is better) Translates to: FNPSAREAETGGFLS*RPAGLQPELNRETL Trigger: CAGGGTTTCTCTGTTTAGCTCTGGCTGTAGACCAGCTGGCCTCAAACTCAGAAATCCGCCTGTCTCTGCCTCCCGAGCACTGGGATTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCCCCACGCACCCCACAACACAAATAGACTTCTAGTCAAAGGAAACCATTACGTGGCTGATACAGCATaGAGCCAGCAGGCCACAGGC | + |
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Preference number: 2 (lower is better) Translates to: SPHAPHNTNRLLVKGNHYVADTA*SQQATG Trigger: GCCTGTGGCCTGCTGGCTGCATGCTGTATCAGCCAC...GTAATGGTTTCCTTTGACTAGAAGTCTATTTGTGTTGTGGGGTGCGTGGGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CCA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCCTGCAGCTAGGTCTCTaGGGACTCCTGCACAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: QLAVKRTLNREVVVQTLCLQLGL*GLLHKD Trigger: GTCCTTGTGCAGGAGTCCCCAGAGACCTAGCTGCAG...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCGTCTCTGGGGACTCCTaGACAAGGACCTTGTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: QLAVKRTLNREVVVQTLCVSGDS*TRTLCA Trigger: AGCACACAAGGTCCTTGTGCAGGAGTCCCCAGAGAC...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCCTCCTCTGCAGCCCTTaGTGTCCCTCAGTGAAGCCC | + |
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Preference number: 2 (lower is better) Translates to: FQLAVKRTLNREVVVQTLLLCSP*CPSVKP Trigger: GGGCTTCACTGAGGGACACCAAGGGCTGCAGAGGAG...GAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTGCTACAGAGCAAGGCTaGCTGTTCAGTGTAAAAACA | + |
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Preference number: 2 (lower is better) Translates to: TCIGVSREAPGELGCTFIATEQG*LFSVKT Trigger: TGTTTTTACACTGAACAGCCAGCCTTGCTCTGTAGC...AATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCCAACAGGGAGCAAACTaGAAGCACACACAACCTGGT | + |
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Preference number: 2 (lower is better) Translates to: QLAVKRTLNREVVVQTLCQQGAN*KHTQPG Trigger: ACCAGGTTGTGTGTGCTTGCAGTTTGCTCCCTGTTG...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCGCTGAGTCCGTGTTGTaGAGGCTGTGGAATGCTCGA | + |
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Preference number: 2 (lower is better) Translates to: FQLAVKRTLNREVVVQTLAESVL*RLWNAR Trigger: TCGAGCATTCCACAGCCTGCACAACACGGACTCAGC...GAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGAGTGAAATGTCCACTGTaGAATACTGCCTATGACACT | + |
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Preference number: 2 (lower is better) Translates to: PVSRRQFKVFTGSADPGGVKCPL*NTAYDT Trigger: AGTGTCATAGGCAGTATTTCACAGTGGACATTTCAC...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR TCA 90 bp | TGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTTTCGACTGTGAAATACTGTaGAATGTCCACTGTGAAATA | + |
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Preference number: 2 (lower is better) Translates to: CIGVSREAPGELGCTFIFDCEIL*NVHCEI Trigger: TATTTCACAGTGGACATTTCACAGTATTTCACAGTC...GAAAATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR TCA 90 bp | TTCAGTGTAAAAACAGCTTTCCTGAGCCAGACAGTGGTGGTGCACACCTTTAATCCACAGGCAAGACTGTaGAATACTGTGAAATGTCCA | + |
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Preference number: 2 (lower is better) Translates to: FSVKTAFLSQTVVVHTFNPQARL*NTVKCP Trigger: TGGACATTTCACAGTATTTCACAGTCTTGCCTGTGG...ATTAAAGGTGTGCACCACCACTGTCTGGCTCAGGAAAGCTGTTTTTACACTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CAA 90 bp | ATGGATGCAATTTCATTCCATTTTCAGTTAGCAGTTAAAAGAACCTaGAACCGGGAAGTGGTGGTGCAAACTCTCTGCTCTCAAATGTTG | + |
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Preference number: 2 (lower is better) Translates to: MDAISFHFQLAVKRT*NREVVVQTLCSQML Trigger: CAACATTTGAGAGCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAAATGGAATGAAATTGCATCCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR TCA 90 bp | ATATACTTAAAGGGCCATTTTCACAAACACGCAAGTTTACATGTAAGGATCCAACTTGGTGTCCCTCAGTaGAGCCCAAATGTTCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: IYLKGHFHKHASLHVRIQLGVPQ*SPNVQL Trigger: AAGCTGAACATTTGGGCTTCACTGAGGGACACCAAG...TTGGATCCTTACATGTAAACTTGCGTGTTTGTGAAAATGGCCCTTTAAGTATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR GCA 90 bp | ATATACTTAAAGGGCCATTTTCACAAACACGCAAGTTTACATGTAAGGATCCAATGTCAGAAGGCCACTTaGCAGGTTGTGGCTGATACA | + |
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Preference number: 2 (lower is better) Translates to: IYLKGHFHKHASLHVRIQCQKAT*QVVADT Trigger: TGTATCAGCCACAACCTGGCAAGTGGCCTTCTGACA...TTGGATCCTTACATGTAAACTTGCGTGTTTGTGAAAATGGCCCTTTAAGTATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | GCCTGCTTCAGTCGGCCTGAGCTGCAGCTAGGTCTCTaGGGACTCCTGCACAAGGACCTTGTGTGCTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: ACFSRPELQLGL*GLLHKDLVCFS Trigger: GGAGAAGCACACAAGGTCCTTGTGCAGGAGTCCCCAGAGACCTAGCTGCAGCTCAGGCCGACTGAAGCAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | ACAGCTCTCCTGGCTGAGTCCGTGTTGTGCAGGCTGTaGAATGCTCGACAGACCCCCAGGCCTGCTTCAGTC | + |
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Preference number: 3 (lower is better) Translates to: TALLAESVLCRL*NARQTPRPASV Trigger: GACTGAAGCAGGCCTGGGGGTCTGTCGAGCATTCCACAGCCTGCACAACACGGACTCAGCCAGGAGAGCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR TCA 72 bp | CCGCCTGACTCCTCTGCAGCCCTTGGTGTCCCTCAGTaGAGCCCAAATGTTCAGCTTTGCCTGCTTGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: PPDSSAALGVPQ*SPNVQLCLLGS Trigger: AGAGCCAAGCAGGCAAAGCTGAACATTTGGGCTTCACTGAGGGACACCAAGGGCTGCAGAGGAGTCAGGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR GCA 72 bp | CAGAAGGCCACTTGCCAGGTTGTGGCTGATACAGCATaGAGCCAGCAGGCCACAGGCAAGACTGTGAAATAC | + |
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Preference number: 3 (lower is better) Translates to: QKATCQVVADTA*SQQATGKTVKY Trigger: GTATTTCACAGTCTTGCCTGTGGCCTGCTGGCTGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | AAAAAGAAACCTGTCAGAAGGCCACTTGCCAGGTTGTaGCTGATACAGCATGCAGCCAGCAGGCCACAGGCA | + |
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Preference number: 3 (lower is better) Translates to: KKKPVRRPLARL*LIQHAASRPQA Trigger: TGCCTGTGGCCTGCTGGCTGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCTTCTGACAGGTTTCTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | CCACAGTCCTCGAGCACACCTGCTACAGAGCAAGGCTaGCTGTTCAGTGTAAAAACAGCTTTCCTGAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: PQSSSTPATEQG*LFSVKTAFLSQ Trigger: CTGGCTCAGGAAAGCTGTTTTTACACTGAACAGCCAGCCTTGCTCTGTAGCAGGTGTGCTCGAGGACTGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | TCCTCGAGCACACCTGCTACAGAGCAAGGCTGGCTGTTCAGTGTAAAAACAGCTCCCAAATGTTCAGCTTaGCCTGCTTGGCTCTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: SSSTPATEQGWLFSVKTAPKCSA*PAWLSP Trigger: TGGGGAGAGCCAAGCAGGCAAAGCTGAACATTTGGG...AGCTGTTTTTACACTGAACAGCCAGCCTTGCTCTGTAGCAGGTGTGCTCGAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCACTCCTCTGCAGCCCTaGGTGTCCCTCAGTGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: QLAVKRTLNREVVVQTLCTPLQP*VSLSEA Trigger: GGCTTCACTGAGGGACACCAAGGGCTGCAGAGGAGT...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | ACTGCAAGCACACACAACCTGGTTCCCTTCAGATGCTaGTCGAAGTCCAACATGGAAGCTGGACACATGAGG | + |
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Preference number: 3 (lower is better) Translates to: TASTHNLVPFRC*SKSNMEAGHMR Trigger: CCTCATGTGTCCAGCTTCCATGTTGGACTTCGACCAGCATCTGAAGGGAACCAGGTTGTGTGTGCTTGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGAAGGCCACTTGCCAGGTaGTGGCTGATACAGCATGCA | + |
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Preference number: 3 (lower is better) Translates to: PVSRRQFKVFTGSADPGGRPLAR*WLIQHA Trigger: TGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCT...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTTCAGCTTTGCCTGCTaGGCTCTCCCCACGCACCCC | + |
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Preference number: 3 (lower is better) Translates to: FQLAVKRTLNREVVVQTLFSFAC*ALPTHP Trigger: GGGGTGCGTGGGGAGAGCCAAGCAGGCAAAGCTGAA...GAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CCA 72 bp | GGGAAGTGGTGGTGCAAACTCTCTGCTCTCAAATGTTaGAGGCAAGCAGATAGATCTCTGAGTCCGAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: GKWWCKLSALKC*RQADRSLSPKP Trigger: TGGCTTCGGACTCAGAGATCTATCTGCTTGCCTCCAACATTTGAGAGCAGAGAGTTTGCACCACCACTTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | TTCAGTGTAAAAACAGCTTTCCTGAGCCAGACAGTGGTGGTGCACACCTTTAATCTGGCTGAGTCCGTGTaGTGCAGGCTGTGGAATGCT | + |
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Preference number: 3 (lower is better) Translates to: FSVKTAFLSQTVVVHTFNLAESV*CRLWNA Trigger: AGCATTCCACAGCCTGCACAACACGGACTCAGCCAG...ATTAAAGGTGTGCACCACCACTGTCTGGCTCAGGAAAGCTGTTTTTACACTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR GCA 72 bp | ACACTCAGTTTTTCCCTATGTCAACAGGGAGCAAACTaGAAGCACACACAACCTGGTTCCCTTCAGATGCTG | + |
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Preference number: 3 (lower is better) Translates to: TLSFSLCQQGAN*KHTQPGSLQML Trigger: CAGCATCTGAAGGGAACCAGGTTGTGTGTGCTTGCAGTTTGCTCCCTGTTGACATAGGGAAAAACTGAGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR-3UTR CAA 90 bp | ATATACTTAAAGGGCCATTTTCACAAACACGCAAGTTTACATGTAAGGATCCAAGGCGGATTTCTGAGTTaGAGGCCAGCTGGTCTACAG | + |
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Preference number: 3 (lower is better) Translates to: IYLKGHFHKHASLHVRIQGGFLS*RPAGLQ Trigger: CTGTAGACCAGCTGGCCTCAAACTCAGAAATCCGCC...TTGGATCCTTACATGTAAACTTGCGTGTTTGTGAAAATGGCCCTTTAAGTATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR GCA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGAGGGTTGGTGCAGGTCTaGACGGAGTCTCCACCAGCG | + |
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Preference number: 4 (lower is better) Translates to: PVSRRQFKVFTGSADPGGGLVQV*TESPPA Trigger: CGCTGGTGGAGACTCCGTGCAGACCTGCACCAACCC...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | TCTCCCCACGCACCCCACAACACAAATAGACTTCTAGTCAAAGGAAACCATTACCGCTCTGCGGTGGGATaGGCCATCTGGTTAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPHAPHNTNRLLVKGNHYRSAVG*AIWLGC Trigger: GCAGCCTAACCAGATGGCTCATCCCACCGCAGAGCG...GTAATGGTTTCCTTTGACTAGAAGTCTATTTGTGTTGTGGGGTGCGTGGGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | ACCTGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTATGAAGAACTGTACATaGCAGGAGGCATGTGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: TCIGVSREAPGELGCTFIMKNCT*QEACVG Trigger: GCCCACACATGCCTCCTGCCATGTACAGTTCTTCAT...AATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR GCA 90 bp | TTCAGTGTAAAAACAGCTTTCCTGAGCCAGACAGTGGTGGTGCACACCTTTAATGACGTCCAGGCGCTCTaGGGTGGGATGAGCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: FSVKTAFLSQTVVVHTFNDVQAL*GGMSHL Trigger: CAGATGGCTCATCCCACCGCAGAGCGCCTGGACGTC...ATTAAAGGTGTGCACCACCACTGTCTGGCTCAGGAAAGCTGTTTTTACACTGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | ACCTGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTGAAGGACTTTGGAAGTaGGTATCAAAGGAGCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: TCIGVSREAPGELGCTFIEGLWK*VSKELG Trigger: TCCGAGCTCCTTTGATACCCACTTCCAAAGTCCTTC...AATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | TCCTCGAGCACACCTGCTACAGAGCAAGGCTGGCTGTTCAGTGTAAAAACAGCTAATCATAGATCCTTGTaGGGAGTGGAGACTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SSSTPATEQGWLFSVKTANHRSL*GVETGL Trigger: CAGGCCAGTCTCCACTCCTCACAAGGATCTATGATT...AGCTGTTTTTACACTGAACAGCCAGCCTTGCTCTGTAGCAGGTGTGCTCGAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGAGTCACTGTGTCACTCTaGGGCACCTCGCCTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: PVSRRQFKVFTGSADPGGVTVSL*GTSPFK Trigger: TTTGAAAGGCGAGGTGCCCCAGAGTGACACAGTGAC...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CAA 72 bp | AATAAAAAGAAACCTGTCAGAAGGCCACTTGCCAGGTaGTGGCTGATACAGCATGCAGCCAGCAGGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: NKKKPVRRPLAR*WLIQHAASRPQ Trigger: CTGTGGCCTGCTGGCTGCATGCTGTATCAGCCACAACCTGGCAAGTGGCCTTCTGACAGGTTTCTTTTTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGAGGCAGGAGGCATGTGTaGGCAACAGAAGTTTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: PVSRRQFKVFTGSADPGGGRRHV*ATEVCQ Trigger: TTGACAAACTTCTGTTGCCCACACATGCCTCCTGCC...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | TCTCCCCACGCACCCCACAACACAAATAGACTTCTAGTCAAAGGAAACCATTACTCCTCCACCACTCTCTaGCTTCTATTCAACCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SPHAPHNTNRLLVKGNHYSSTTL*LLFNQG Trigger: GCCCTGGTTGAATAGAAGTCAGAGAGTGGTGGAGGA...GTAATGGTTTCCTTTGACTAGAAGTCTATTTGTGTTGTGGGGTGCGTGGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CAA 72 bp | ATAAAGATGAGACAGACCTTGAAGTTTCCTAGTGACTaGCCACCAAGGCTGGCCTGGAACTCAGGGACTTGT | + |
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Preference number: 4 (lower is better) Translates to: IKMRQTLKFPSD*PPRLAWNSGTC Trigger: ACAAGTCCCTGAGTTCCAGGCCAGCCTTGGTGGCAAGTCACTAGGAAACTTCAAGGTCTGTCTCATCTTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | CCTGTAAGCAGGAGACAGTTCAAAGTATTCACAGGCAGTGCTGATCCTGGAGGACTGCAAATCCCAACTTaGAGCTGCAGAGGAAAAACA | + |
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Preference number: 4 (lower is better) Translates to: PVSRRQFKVFTGSADPGGLQIPT*SCRGKT Trigger: TGTTTTTCCTCTGCAGCTTCAAGTTGGGATTTGCAG...TCCTCCAGGATCAGCACTGCCTGTGAATACTTTGAACTGTCTCCTGCTTACAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | TGCATTGGTGTGAGCAGGGAGGCCCCAGGTGAGCTAGGCTGTACTTTCATTTTCAGCCAGTTAATGATCTaGTCATCCTTTATATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: CIGVSREAPGELGCTFIFSQLMI*SSFISG Trigger: TCCTGATATAAAGGATGACCAGATCATTAACTGGCT...GAAAATGAAAGTACAGCCTAGCTCACCTGGGGCCTCCCTGCTCACACCAATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCTTTTCGGAGGAGAATTaGAGAAATCGCTCTCTAACG | + |
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Preference number: 4 (lower is better) Translates to: QLAVKRTLNREVVVQTLCFSEEN*RNRSLT Trigger: CGTTAGAGAGCGATTTCTTCAATTCTCCTCCGAAAA...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR GCA 90 bp | ATTTCTGAGTTTGAGGCCAGCTGGTCTACAGCCAGAGCTAAACAGAGAAACCCTAAGAAATTAACCACTTaGGGCAGGCAGATCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: ISEFEASWSTARAKQRNPKKLTT*GRQIFS Trigger: ACTGAAGATCTGCCTGCCGCAAGTGGTTAATTTCTT...AGGGTTTCTCTGTTTAGCTCTGGCTGTAGACCAGCTGGCCTCAAACTCAGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | CAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCTGCTCAAAATTTAGACTCTaGAGATACTGTAGACCTTGC | + |
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Preference number: 4 (lower is better) Translates to: QLAVKRTLNREVVVQTLCSKFRL*RYCRPC Trigger: GCAAGGTCTACAGTATCTTCAGAGTCTAAATTTTGA...GCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR GCA 90 bp | TCTCCCCACGCACCCCACAACACAAATAGACTTCTAGTCAAAGGAAACCATTACGGGTTATTTGGATCCTaGAACTTTTTCCAGAGATGT | + |
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Preference number: 4 (lower is better) Translates to: SPHAPHNTNRLLVKGNHYGLFGS*NFFQRC Trigger: ACATCTCTGGAAAAAGTTGCAGGATCCAAATAACCC...GTAATGGTTTCCTTTGACTAGAAGTCTATTTGTGTTGTGGGGTGCGTGGGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | ATTTCTGAGTTTGAGGCCAGCTGGTCTACAGCCAGAGCTAAACAGAGAAACCCTAAACCATGGTGTCGATaGGACATATCTTGTTATTAT | + |
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Preference number: 4 (lower is better) Translates to: ISEFEASWSTARAKQRNPKPWCR*DISCYY Trigger: ATAATAACAAGATATGTCCCATCGACACCATGGTTT...AGGGTTTCTCTGTTTAGCTCTGGCTGTAGACCAGCTGGCCTCAAACTCAGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | ATATACTTAAAGGGCCATTTTCACAAACACGCAAGTTTACATGTAAGGATCCAATGGTTAGGCTGCTCCTaGTCAGCTTTCTTCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: IYLKGHFHKHASLHVRIQWLGCS*SAFFSG Trigger: CCCTGAGAAGAAAGCTGACCAGGAGCAGCCTAACCA...TTGGATCCTTACATGTAAACTTGCGTGTTTGTGAAAATGGCCCTTTAAGTATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| 3UTR CAA 72 bp | ATTTCATTCCATTTTCAGTTAGCAGTTAAAAGAACCTaGAACCGGGAAGTGGTGGTGCAAACTCTCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: ISFHFQLAVKRT*NREVVVQTLCS Trigger: AGAGCAGAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAAATGGAATGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR GCA 90 bp | TTCAGTGTAAAAACAGCTTTCCTGAGCCAGACAGTGGTGGTGCACACCTTTAATAGATACTGTAGACCTTaGTTCAAGTTTCCACTCAAA | + |
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Preference number: 4 (lower is better) Translates to: FSVKTAFLSQTVVVHTFNRYCRP*FKFPLK Trigger: TTTGAGTGGAAACTTGAAGCAAGGTCTACAGTATCT...ATTAAAGGTGTGCACCACCACTGTCTGGCTCAGGAAAGCTGTTTTTACACTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | AAGGTATTCATAGACAGAATGAAATTCAGGGCTCTGCATCAGTCTTATTACACACTACTGGAAGGACTTTaGAAGTGGGTATCAAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KVFIDRMKFRALHQSYYTLLEGL*KWVSKE Trigger: CTCCTTTGATACCCACTTCCAAAGTCCTTCCAGTAG...TGTGTAATAAGACTGATGCAGAGCCCTGAATTTCATTCTGTCTATGAATACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR TCA 90 bp | TGGCATCCCATCAGTATCTATGGATGCAATTTCATTCCATTTTCAGTTAGCAGTATCAATGAACTTCTTTaGCCTCTTAAGCACACAAGG | + |
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Preference number: 4 (lower is better) Translates to: WHPISIYGCNFIPFSVSSINELL*PLKHTR Trigger: CCTTGTGTGCTTAAGAGGTCAAAGAAGTTCATTGAT...ACTGCTAACTGAAAATGGAATGAAATTGCATCCATAGATACTGATGGGATGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CCA 90 bp | AAGGTATTCATAGACAGAATGAAATTCAGGGCTCTGCATCAGTCTTATTACACAGAAGTTTGTCAAAGATaGATATCAGATCACGGTATA | + |
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Preference number: 4 (lower is better) Translates to: KVFIDRMKFRALHQSYYTEVCQR*ISDHGI Trigger: TATACCGTGATCTGATATCCATCTTTGACAAACTTC...TGTGTAATAAGACTGATGCAGAGCCCTGAATTTCATTCTGTCTATGAATACCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS TCA 90 bp | GACAGCAGCAAGCACAGCAGGACGTCCAGGCGCTCTGCGGTGGGATaGGCCATCTGGTTAGGCTGCTCCTGGTCAGCTTTCTTCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: DSSKHSRTSRRSAVG*AIWLGCSWSAFFSG Trigger: CCCTGAGAAGAAAGCTGACCAGGAGCAGCCTAACCAGATGGCTCATCCCACCGCAGAGCGCCTGGACGTCCTGCTGTGCTTGCTGCTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS GCA 90 bp | CTCAATGTAGGACAGCAGCAAGCACAGCAGGACGTCCAGGCGCTCTaGGGTGGGATGAGCCATCTGGTTAGGCTGCTCCTGGTCAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: LNVGQQQAQQDVQAL*GGMSHLVRLLLVSF Trigger: AAAGCTGACCAGGAGCAGCCTAACCAGATGGCTCATCCCACCGCAGAGCGCCTGGACGTCCTGCTGTGCTTGCTGCTGTCCTACATTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TCTCCGACTCCTCTCTTCCCGCCTGACTCCTCTGCAGCCCTTGGTGTCCCTCAGACTACTGGAAGGACTTaGGAAGTGGGTATCAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: SPTPLFPPDSSAALGVPQTTGRT*EVGIKG Trigger: TCCTTTGATACCCACTTCCAAAGTCCTTCCAGTAGT...CTGAGGGACACCAAGGGCTGCAGAGGAGTCAGGCGGGAAGAGAGGAGTCGGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TCTCCGACTCCTCTCTTCCCGCCTGACTCCTCTGCAGCCCTTGGTGTCCCTCAGTTTCACGCCTCAAAGTaGGGAAATATAAACTTATCC | + |
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Preference number: 5 (lower is better) Translates to: SPTPLFPPDSSAALGVPQFHASK*GNINLS Trigger: GGATAAGTTTATATTTCCCAACTTTGAGGCGTGAAA...CTGAGGGACACCAAGGGCTGCAGAGGAGTCAGGCGGGAAGAGAGGAGTCGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS CCA 90 bp | TGGGTATCAAAGGAGCTCGGAGTAAGGCCAGTCACTGTGTCACTCTaGGGCACCTCGCCTTTCAAAAAGTCATCATCTTCATCCTCCACT | + |
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Preference number: 5 (lower is better) Translates to: WVSKELGVRPVTVSL*GTSPFKKSSSSSST Trigger: AGTGGAGGATGAAGATGATGACTTTTTGAAAGGCGAGGTGCCCCAGAGTGACACAGTGACTGGCCTTACTCCGAGCTCCTTTGATACCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TCCTCGAGCACACCTGCTACAGAGCAAGGCTGGCTGTTCAGTGTAAAAACAGCTTCTGCAAATCCCAACTaGAAGCTGCAGAGGAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: SSSTPATEQGWLFSVKTASANPN*KLQRKN Trigger: GTTTTTCCTCTGCAGCTTCAAGTTGGGATTTGCAGA...AGCTGTTTTTACACTGAACAGCCAGCCTTGCTCTGTAGCAGGTGTGCTCGAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS CCA 90 bp | AATCCCAACTTGAAGCTGCAGAGGAAAAACATGAAGAACTGTACATaGCAGGAGGCATGTGTGGGCAACAGAAGTTTGTCAAAGATGGAT | + |
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Preference number: 5 (lower is better) Translates to: NPNLKLQRKNMKNCT*QEACVGNRSLSKMD Trigger: ATCCATCTTTGACAAACTTCTGTTGCCCACACATGCCTCCTGCCATGTACAGTTCTTCATGTTTTTCCTCTGCAGCTTCAAGTTGGGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TTTCAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCAAAGAAATTAACCACTaGCGGCAGGCAGATCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: FQLAVKRTLNREVVVQTLKEINH*RQADLQ Trigger: CTGAAGATCTGCCTGCCGCAAGTGGTTAATTTCTTT...GAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TTTCAGTTAGCAGTTAAAAGAACCTTGAACCGGGAAGTGGTGGTGCAAACTCTCAAAATTGCAGGAAGATaGTCATCTTCGTCATCAGAA | + |
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Preference number: 5 (lower is better) Translates to: FQLAVKRTLNREVVVQTLKIAGR*SSSSSE Trigger: TTCTGATGACGAAGATGACAATCTTCCTGCAATTTT...GAGAGTTTGCACCACCACTTCCCGGTTCAAGGTTCTTTTAACTGCTAACTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS-3UTR CAA 90 bp | TGGCATCCCATCAGTATCTATGGATGCAATTTCATTCCATTTTCAGTTAGCAGTTTTTTCGGAGGAGAATaGAAGAAATCGCTCTCTAAC | + |
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Preference number: 5 (lower is better) Translates to: WHPISIYGCNFIPFSVSSFFGGE*KKSLSN Trigger: GTTAGAGAGCGATTTCTTCAATTCTCCTCCGAAAAA...ACTGCTAACTGAAAATGGAATGAAATTGCATCCATAGATACTGATGGGATGCCA 39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS GCA 72 bp | GGACAGCAGCAAGCACAGCAGGACGTCCAGGCGCTCTaGGGTGGGATGAGCCATCTGGTTAGGCTGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: GQQQAQQDVQAL*GGMSHLVRLLL Trigger: CAGGAGCAGCCTAACCAGATGGCTCATCCCACCGCAGAGCGCCTGGACGTCCTGCTGTGCTTGCTGCTGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS CCA 72 bp | AAGGAGCTCGGAGTAAGGCCAGTCACTGTGTCACTCTaGGGCACCTCGCCTTTCAAAAAGTCATCATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: KELGVRPVTVSL*GTSPFKKSSSS Trigger: TGAAGATGATGACTTTTTGAAAGGCGAGGTGCCCCAGAGTGACACAGTGACTGGCCTTACTCCGAGCTCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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| CDS CCA 72 bp | ACAGAGGAACGAAATTCTAGTAGCCAGTTAATGATCTaGTCATCCTTTATATCAGGATCAGACAGCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: TEERNSSSQLMI*SSFISGSDSWF Trigger: GAACCAGCTGTCTGATCCTGATATAAAGGATGACCAGATCATTAACTGGCTACTAGAATTTCGTTCCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023363.8 |
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