Pregenerated sensors for RRM2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022292Ensembl transcript IDs: ENSMUST00000022901.16, ENSMUST00000137636.8, ENSMUST00000144498.8, ENSMUST00000145155.2, ENSMUST00000145175.3, ENSMUST00000146821.8, ENSMUST00000153481.2
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTaGATTCTAGGCAGGGATGGAATGCTCAGCCTTCCCCAAGCCCAC | + |
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Preference number: 1 (lower is better) Translates to: LTALCCVHVGSCFAD*ILGRDGMLSLPQAH Trigger: GTGGGCTTGGGGAAGGCTGAGCATTCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | GGAGGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTaGAGACTGCATTCTAGGCAGGGATGGAATGCTCAGCCTTCCCCA | + |
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Preference number: 1 (lower is better) Translates to: GGADSLVLCTCGQLL*RLHSRQGWNAQPSP Trigger: TGGGGAAGGCTGAGCATTCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | CTGTGGGAGGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTaGTTTGCAGACTGCATTCTAGGCAGGGATGGAATGCTCAGCCTT | + |
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Preference number: 1 (lower is better) Translates to: LWEVLTALCCVHVGS*FADCILGRDGMLSL Trigger: AAGGCTGAGCATTCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACCTCCCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | TGTGTGTGTGCATATGTGTGCATGTACAGGTGGTGTGTGCGTGTGTaGATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGAT | + |
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Preference number: 1 (lower is better) Translates to: CVCAYVCMYRWCVRV*MCTCVRVCYARDLD Trigger: ATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACGCACACACCACCTGTACATGCACACATATGCACACACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 90 bp | TTCCTGAAAATGAGGAAGGGCACATTGCCCAGGTGTCCTGGCTCCTaGCCTCTCTGCATCTTTCTTAGAAAGACTTCCATCTCCCTTATA | + |
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Preference number: 1 (lower is better) Translates to: FLKMRKGTLPRCPGS*PLCIFLRKTSISLI Trigger: TATAAGGGAGATGGAAGTCTTTCTAAGAAAGATGCAGAGAGGCCAGGAGCCAGGACACCTGGGCAATGTGCCCTTCCTCATTTTCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | GTAATAGCTACTCTGTCGTGCTTAGAGGGCTACTGGGTGATAACATaGCAAATGGGAAGCACAGAGCCATGTTTCATTTCTGGTGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: VIATLSCLEGYWVIT*QMGSTEPCFISGAP Trigger: GGGAGCACCAGAAATGAAACATGGCTCTGTGCTTCCCATTTGTCATGTTATCACCCAGTAGCCCTCTAAGCACGACAGAGTAGCTATTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | TTTCGCTGTTCTGTTGCTTTTGAGATAGATCTCAGTATGTATCCCTaGTCATCCTCAAACCCAGAGATCCACGTGCCCTCAGCTTCCTCT | + |
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Preference number: 1 (lower is better) Translates to: FRCSVAFEIDLSMYP*SSSNPEIHVPSASS Trigger: AGAGGAAGCTGAGGGCACGTGGATCTCTGGGTTTGAGGATGATCAGGGATACATACTGAGATCTATCTCAAAAGCAACAGAACAGCGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | TCAGCTGCCATCATTTTATTTGTACTCTGTGTGTGTGCATATGTGTaGATGTACAGGTGGTGTGTGCGTGTGTGCATGTGTACGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: SAAIILFVLCVCAYV*MYRWCVRVCMCTCV Trigger: CACACACGTACACATGCACACACGCACACACCACCTGTACATGCACACATATGCACACACACAGAGTACAAATAAAATGATGGCAGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | CATCACAAGAACTCTGAAGATCTACCAGGTTTGAGAAGACAACTTTaGGAAATGCCCATCAATCCAGGTTCTAAACACCCCTGGGCTGTC | + |
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Preference number: 1 (lower is better) Translates to: HHKNSEDLPGLRRQL*EMPINPGSKHPWAV Trigger: GACAGCCCAGGGGTGTTTAGAACCTGGATTGATGGGCATTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTTCTTGTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | CCTCTGAATTTCAGCTGCCATCATTTTATTTGTACTCTGTGTGTGTaGATATGTGTGCATGTACAGGTGGTGTGTGCGTGTGTGCATGTG | + |
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Preference number: 1 (lower is better) Translates to: PLNFSCHHFICTLCV*ICVHVQVVCACVHV Trigger: CACATGCACACACGCACACACCACCTGTACATGCACACATATGCACACACACAGAGTACAAATAAAATGATGGCAGCTGAAATTCAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | TCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAAGAACTCTaGAGATCTACCAGGTTTGAGAAGACAACTTTGAGAAATGCCCAT | + |
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Preference number: 1 (lower is better) Translates to: SPSPLTASLFPSQEL*RSTRFEKTTLRNAH Trigger: ATGGGCATTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTTCTTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 90 bp | GACGTCAACCTTAAATCACTTTCTCAGATTGGCACAAATCCAAAATaGTTCACTAGTCCCTCCCACCTCCCTTCTTTTCTCCATTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: DVNLKSLSQIGTNPK*FTSPSHLPSFLHFQ Trigger: CTGGAAATGGAGAAAAGAAGGGAGGTGGGAGGGACTAGTGAACCATTTTGGATTTGTGCCAATCTGAGAAAGTGATTTAAGGTTGACGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | GACCCTTATATTCCTCCTGCAAACATTAAAACCACAAAGATTCAATaGATTCTTTATCTCAATCCACCCCTCAGTCACTCTCTGGCGAGG | + |
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Preference number: 1 (lower is better) Translates to: DPYIPPANIKTTKIQ*ILYLNPPLSHSLAR Trigger: CCTCGCCAGAGAGTGACTGAGGGGTGGATTGAGATAAAGAATTCATTGAATCTTTGTGGTTTTAATGTTTGCAGGAGGAATATAAGGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 90 bp | ATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTaGAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGT | + |
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Preference number: 1 (lower is better) Translates to: ICIQGEDIICGFGHD*KSLILRNSFLKEIC Trigger: ACAAATTTCTTTGAGAAACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCACCTTGGATGCAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
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| 3UTR TCA 90 bp | TGCATCTCTTTTTCCATCACAAGAACTCTGAAGATCTACCAGGTTTaGGAAGACAACTTTGAGAAATGCCCATCAATCCAGGTTCTAAAC | + |
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Preference number: 1 (lower is better) Translates to: CISFSITRTLKIYQV*EDNFEKCPSIQVLN Trigger: GTTTAGAACCTGGATTGATGGGCATTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTTCTTGTGATGGAAAAAGAGATGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 90 bp | AAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATCGCTaGTACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: KVKTLSVVSAMTANR*YSETRFSKKFVFPS Trigger: AGAAGGGAAAACAAATTTCTTTGAGAAACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
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| 3UTR-3UTR GCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAAACCCAGAGATCCACGTaGCCTCAGCTTCCTCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: WNAQPSPSPLTASLFPSQTQRST*PQLPLR Trigger: CCTCAGAGGAAGCTGAGGGCACGTGGATCTCTGGGT...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCATGTGGGCAGCTGCTTTaGAGACTGCATTCTAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RVCMCTCVRVCYARDLDSCGQLL*RLHSRQ Trigger: CTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCCACA...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAAGCTGCTTTGCAGACTaGATTCTAGGCAGGGATGGA | + |
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Preference number: 2 (lower is better) Translates to: RVCMCTCVRVCYARDLDSSCFAD*ILGRDG Trigger: TCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCT...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCACCCAAGCCCACTGACTaGATCTCTTTTTCCATCACA | + |
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Preference number: 2 (lower is better) Translates to: RVCMCTCVRVCYARDLDSPKPTD*ISFSIT Trigger: TGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGG...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CAA 90 bp | TTTAGGCTTCCTCTTGATACTTTCCTGAAAATGAGGAAGGGCACATaGCCCAGGTGTCCTGGCTCCTGGCCTCTCTGCATCTTTCTTAGA | + |
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Preference number: 2 (lower is better) Translates to: FRLPLDTFLKMRKGT*PRCPGSWPLCIFLR Trigger: TCTAAGAAAGATGCAGAGAGGCCAGGAGCCAGGACACCTGGGCAATGTGCCCTTCCTCATTTTCAGGAAAGTATCAAGAGGAAGCCTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATAGCATGTGTACGTGTGTaGGTGTGTGCTATGCTAGGG | + |
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Preference number: 2 (lower is better) Translates to: MCEIQARPHETPTKRRKIACVRV*VCAMLG Trigger: CCCTAGCATAGCACACACGCACACACGTACACATGC...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR TCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAATATCAAGCTCATACCTaGCTCCTAAATCTATGCTCT | + |
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Preference number: 2 (lower is better) Translates to: WNAQPSPSPLTASLFPSQYQAHT*LLNLCS Trigger: AGAGCATAGATTTAGGAGTCAGGTATGAGCTTGATA...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR TCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAATATTAATTAGCAGGTaGGGCAGTGGAGATAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: RVCMCTCVRVCYARDLDSILISR*GSGDKS Trigger: ACTTTTATCTCCACTGCCTCACCTGCTAATTAATAT...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAAGACAACTTTGAGAAATaGCCATCAATCCAGGTTCTA | + |
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Preference number: 2 (lower is better) Translates to: WNAQPSPSPLTASLFPSQDNFEK*PSIQVL Trigger: TAGAACCTGGATTGATGGGCATTTCTCAAAGTTGTC...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGAAAGAAGAATCACTTTaGTTACAAGAACCACAACCA | + |
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Preference number: 2 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRKEESL*LQEPQP Trigger: TGGTTGTGGTTCTTGTAAGCAAAGTGATTCTTCTTT...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGTAGATTTCCTATCTaGTATCCAGCGCAGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: ARILQQMIQRRKFLPQQQSRFPI*YPAQSP Trigger: TGGGCTCTGCGCTGGATAGCAGATAGGAAATCTACT...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
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| 3UTR-3UTR TCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATACTCTGGTCACCTCCATaGACTTGGGACTTACTATTA | + |
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Preference number: 2 (lower is better) Translates to: MCEIQARPHETPTKRRKILWSPP*TWDLLL Trigger: TAATAGTAAGTCCCAAGTTCATGGAGGTGACCAGAG...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATCGCTGATACTCTGCCTGAAAAATCTTTaGGAATCCAAGTTCTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: QGEDIICGFGHDCKSLILCLKNL*ESKFSK Trigger: CTTGGAGAACTTGGATTCTCAAAGATTTTTCAGGCA...GAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCACCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTTTGAGAATCCAAGTTCTCCAAGTAATCTGTCAGCTACAAACTCAATGTACCACAGTTCATTCCAATaGGGCCAACAGGCAAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: IFENPSSPSNLSATNSMYHSSFQ*GQQARL Trigger: AAGCCTTGCCTGTTGGCCTCATTGGAATGAACTGTG...GTACATTGAGTTTGTAGCTGACAGATTACTTGGAGAACTTGGATTCTCAAAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
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| 3UTR-3UTR CCA 90 bp | TTGACTTTAGAACTAATTTGTCCTGAATGTAGCCCATCAAGAGTTTCCATATCAAGGTGTCCTGGCTCCTaGCCTCTCTGCATCTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LTLELICPECSPSRVSISRCPGS*PLCIFL Trigger: AAGAAAGATGCAGAGAGGCCAGGAGCCAGGACACCT...TGATATGGAAACTCTTGATGGGCTACATTCAGGACAAATTAGTTCTAAAGTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTGGCTCCTGGCCTCTCTaGATCTTTCTTAGAAAGACT | + |
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Preference number: 2 (lower is better) Translates to: TINMYHIKVPVTTYEEPGGSWPL*IFLRKT Trigger: AGTCTTTCTAAGAAAGATGCAGAGAGGCCAGGAGCC...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR TCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTACAGAGATAAACCTCTaGATTTCAGCTGCCATCATT | + |
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Preference number: 2 (lower is better) Translates to: TINMYHIKVPVTTYEEPGTEINL*ISAAII Trigger: AATGATGGCAGCTGAAATTCAGAGGTTTATCTCTGT...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTCCTCTGAATTTCAGCTaGCATCATTTTATTTGTACT | + |
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Preference number: 2 (lower is better) Translates to: TINMYHIKVPVTTYEEPGPLNFS*HHFICT Trigger: AGTACAAATAAAATGATGGCAGCTGAAATTCAGAGG...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR GCA 90 bp | TTGACTTTAGAACTAATTTGTCCTGAATGTAGCCCATCAAGAGTTTCCATATCAAACTCTAGGACAAATTaGACTTCTTTGAAACGCATG | + |
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Preference number: 2 (lower is better) Translates to: LTLELICPECSPSRVSISNSRTN*TSLKRM Trigger: CATGCGTTTCAAAGAAGTGCAATTTGTCCTAGAGTT...TGATATGGAAACTCTTGATGGGCTACATTCAGGACAAATTAGTTCTAAAGTCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 72 bp | GGGCAGCTGCTTTGCAGACTGCATTCTAGGCAGGGATaGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCA | + |
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Preference number: 3 (lower is better) Translates to: GQLLCRLHSRQG*NAQPSPSPLTA Trigger: TGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR CAA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAATGAGGAAGGGCACATaGCCCAGGTGTCCTGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: RVCMCTCVRVCYARDLDSMRKGT*PRCPGS Trigger: GGAGCCAGGACACCTGGGCAATGTGCCCTTCCTCAT...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 72 bp | CTGGGCATGGCATCACACACCAATAACCCCAGGGACTaGGAGGCTGAAGCAAGAGGGTTATGTGTGAGATCC | + |
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Preference number: 3 (lower is better) Translates to: LGMASHTNNPRD*EAEARGLCVRS Trigger: GGATCTCACACATAACCCTCTTGCTTCAGCCTCCCAGTCCCTGGGGTTATTGGTGTGTGATGCCATGCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 72 bp | TGTATCCCTGATCATCCTCAAACCCAGAGATCCACGTaGCCTCAGCTTCCTCTGAGGACTGGACTAAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: CIPDHPQTQRST*PQLPLRTGLRH Trigger: ATGCCTTAGTCCAGTCCTCAGAGGAAGCTGAGGGCACGTGGATCTCTGGGTTTGAGGATGATCAGGGATACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 72 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTaGAGACTGCATTCTAGGCAGGGATGGAATGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: DSLVLCTCGQLL*RLHSRQGWNAQ Trigger: CTGAGCATTCCATCCCTGCCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 72 bp | TGTGTGCGTGTGTGCATGTGTACGTGTGTGCGTGTGTaGTATGCTAGGGATCTGGATTCAGGACCTCACACT | + |
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Preference number: 3 (lower is better) Translates to: CVRVCMCTCVRV*YARDLDSGPHT Trigger: AGTGTGAGGTCCTGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACGCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 72 bp | ATGAGGAAGGGCACATTGCCCAGGTGTCCTGGCTCCTaGCCTCTCTGCATCTTTCTTAGAAAGACTTCCATC | + |
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Preference number: 3 (lower is better) Translates to: MRKGTLPRCPGS*PLCIFLRKTSI Trigger: GATGGAAGTCTTTCTAAGAAAGATGCAGAGAGGCCAGGAGCCAGGACACCTGGGCAATGTGCCCTTCCTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 72 bp | GGGATGGAATGCTCAGCCTTCCCCAAGCCCACTGACTaGATCTCTTTTTCCATCACAAGAACTCTGAAGATC | + |
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Preference number: 3 (lower is better) Translates to: GMECSAFPKPTD*ISFSITRTLKI Trigger: GATCTTCAGAGTTCTTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCATCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR-3UTR CAA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGAGGTTTCCATGTGTTTaGTTTGTTTTCGCTGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRRFPCV*FVFAVL Trigger: CAGAACAGCGAAAACAAACAAAACACATGGAAACCT...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR TCA 72 bp | TCTGTTGCTTTTGAGATAGATCTCAGTATGTATCCCTaGTCATCCTCAAACCCAGAGATCCACGTGCCCTCA | + |
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Preference number: 3 (lower is better) Translates to: SVAFEIDLSMYP*SSSNPEIHVPS Trigger: TGAGGGCACGTGGATCTCTGGGTTTGAGGATGATCAGGGATACATACTGAGATCTATCTCAAAAGCAACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR CCA 72 bp | ATCACTTTGCTTACAAGAACCACAACCATGGTAACCTaGAGTCTACTACTCCATAAGCCTCCCACGATAAGC | + |
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Preference number: 3 (lower is better) Translates to: ITLLTRTTTMVT*SLLLHKPPTIS Trigger: GCTTATCGTGGGAGGCTTATGGAGTAGTAGACTCCAGGTTACCATGGTTGTGGTTCTTGTAAGCAAAGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| 3UTR GCA 72 bp | TTCAGCTGCCATCATTTTATTTGTACTCTGTGTGTGTaGATATGTGTGCATGTACAGGTGGTGTGTGCGTGT | + |
|
Preference number: 3 (lower is better) Translates to: FSCHHFICTLCV*ICVHVQVVCAC Trigger: ACACGCACACACCACCTGTACATGCACACATATGCACACACACAGAGTACAAATAAAATGATGGCAGCTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR-3UTR CAA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATATTCAGGACCTCACACTaGAGTAGCAGGAACTTTACT | + |
|
Preference number: 3 (lower is better) Translates to: MCEIQARPHETPTKRRKIFRTSH*SSRNFT Trigger: AGTAAAGTTCCTGCTACTCAAGTGTGAGGTCCTGAA...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR TCA 72 bp | AACTCTGAAGATCTACCAGGTTTGAGAAGACAACTTTaGGAAATGCCCATCAATCCAGGTTCTAAACACCCC | + |
|
Preference number: 3 (lower is better) Translates to: NSEDLPGLRRQL*EMPINPGSKHP Trigger: GGGGTGTTTAGAACCTGGATTGATGGGCATTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR GCA 72 bp | ATCATTTTATTTGTACTCTGTGTGTGTGCATATGTGTaGATGTACAGGTGGTGTGTGCGTGTGTGCATGTGT | + |
|
Preference number: 3 (lower is better) Translates to: IILFVLCVCAYV*MYRWCVRVCMC Trigger: ACACATGCACACACGCACACACCACCTGTACATGCACACATATGCACACACACAGAGTACAAATAAAATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR GCA 72 bp | CAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTaGAAATCGCTGATACTCAGAAACTCGTTTCTCAAA | + |
|
Preference number: 3 (lower is better) Translates to: QGEDIICGFGHD*KSLILRNSFLK Trigger: TTTGAGAAACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCACCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
||
| 3UTR CCA 72 bp | CTTAAATCACTTTCTCAGATTGGCACAAATCCAAAATaGTTCACTAGTCCCTCCCACCTCCCTTCTTTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: LKSLSQIGTNPK*FTSPSHLPSFL Trigger: GAGAAAAGAAGGGAGGTGGGAGGGACTAGTGAACCATTTTGGATTTGTGCCAATCTGAGAAAGTGATTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR TCA 72 bp | CCACTGACTGCATCTCTTTTTCCATCACAAGAACTCTaGAGATCTACCAGGTTTGAGAAGACAACTTTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: PLTASLFPSQEL*RSTRFEKTTLR Trigger: TCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTTCTTGTGATGGAAAAAGAGATGCAGTCAGTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR-3UTR CAA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATATTCCATGTGTTTTGTTaGTTTTCGCTGTTCTGTTGC | + |
|
Preference number: 3 (lower is better) Translates to: MCEIQARPHETPTKRRKIFHVFC*FSLFCC Trigger: GCAACAGAACAGCGAAAACAAACAAAACACATGGAA...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR TCA 72 bp | TTTTCCATCACAAGAACTCTGAAGATCTACCAGGTTTaGGAAGACAACTTTGAGAAATGCCCATCAATCCAG | + |
|
Preference number: 3 (lower is better) Translates to: FSITRTLKIYQV*EDNFEKCPSIQ Trigger: CTGGATTGATGGGCATTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCAGAGTTCTTGTGATGGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR TCA 72 bp | ACATTATCTGTGGTTTCGGCCATGACTGCAAATCGCTaGTACTCAGAAACTCGTTTCTCAAAGAAATTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: TLSVVSAMTANR*YSETRFSKKFV Trigger: AACAAATTTCTTTGAGAAACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
||
| 3UTR-3UTR CAA 90 bp | TTGACTTTAGAACTAATTTGTCCTGAATGTAGCCCATCAAGAGTTTCCATATCACAATGGAAGTATGGCTaGCATTCATTTAGGATTCCG | + |
|
Preference number: 3 (lower is better) Translates to: LTLELICPECSPSRVSISQWKYG*HSFRIP Trigger: CGGAATCCTAAATGAATGCAAGCCATACTTCCATTG...TGATATGGAAACTCTTGATGGGCTACATTCAGGACAAATTAGTTCTAAAGTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR TCA 72 bp | ATTCCTCCTGCAAACATTAAAACCACAAAGATTCAATaGATTCTTTATCTCAATCCACCCCTCAGTCACTCT | + |
|
Preference number: 3 (lower is better) Translates to: IPPANIKTTKIQ*ILYLNPPLSHS Trigger: AGAGTGACTGAGGGGTGGATTGAGATAAAGAATTCATTGAATCTTTGTGGTTTTAATGTTTGCAGGAGGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| 3UTR-3UTR CAA 90 bp | TTGACTTTAGAACTAATTTGTCCTGAATGTAGCCCATCAAGAGTTTCCATATCAACAACGCCACTGTACTaGATCTTCTCACTAATATTA | + |
|
Preference number: 3 (lower is better) Translates to: LTLELICPECSPSRVSISTTPLY*IFSLIL Trigger: TAATATTAGTGAGAAGATCAAGTACAGTGGCGTTGT...TGATATGGAAACTCTTGATGGGCTACATTCAGGACAAATTAGTTCTAAAGTCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR CCA 90 bp | CCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCACCCTTCTCCGGCCTaGCCGCTTCCGGCCTTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: PSSLLISSFEKVSPGMRPHPSPA*PLPAFP Trigger: CGGAAAGGCCGGAAGCGGCCAGGCCGGAGAAGGGTG...AGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | GGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATGTGAGGGAGGTCCTTTaGCAAGTCAACCTCCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GADSLVLCTCGQLLCRLHVREVL*QVNLLC Trigger: GCAGAGGAGGTTGACTTGTCAAAGGACCTCCCTCAC...ATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GTGCCCTCAGCTTCCTCTGAGGACTGGACTAAGGCATGTACTACCACAGCCGAAGAGTGGCTCTTCATTTaGCCTCACCACATTTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VPSASSEDWTKACTTTAEEWLFI*PHHIFF Trigger: GAAGAAAATGTGGTGAGGTCAAATGAAGAGCCACTC...TTCGGCTGTGGTAGTACATGCCTTAGTCCAGTCCTCAGAGGAAGCTGAGGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGCAAGTCAACCTCCTCTaGTGTCCAGAAAGATGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRQVNLL*CPERCL Trigger: CAGGCATCTTTCTGGACAGCAGAGGAGGTTGACTTG...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GTGCCCTCAGCTTCCTCTGAGGACTGGACTAAGGCATGTACTACCACAGCCGAACCTCACTCTATCTTCTaGAGGCTTGTTTACCAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: VPSASSEDWTKACTTTAEPHSIF*RLVYQV Trigger: TACTTGGTAAACAAGCCTTCAGAAGATAGAGTGAGG...TTCGGCTGTGGTAGTACATGCCTTAGTCCAGTCCTCAGAGGAAGCTGAGGGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAACACAGTTCATTCCAATaGGGCCAACAGGCAAGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: WNAQPSPSPLTASLFPSQHSSFQ*GQQARL Trigger: AAGCCTTGCCTGTTGGCCTCATTGGAATGAACTGTG...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGAGTAGATTTCCTATCTaGTATCCAGCGCAGAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRSRFPI*YPAQSP Trigger: TGGGCTCTGCGCTGGATAGCAGATAGGAAATCTACT...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR CCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTCACCCTTCTCCGGCCTaGCCGCTTCCGGCCTTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: TINMYHIKVPVTTYEEPGHPSPA*PLPAFP Trigger: CGGAAAGGCCGGAAGCGGCCAGGCCGGAGAAGGGTG...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR CCA 90 bp | TCTTTGAGAATCCAAGTTCTCCAAGTAATCTGTCAGCTACAAACTCAATGTACTCACCCTTCTCCGGCCTaGCCGCTTCCGGCCTTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: SLRIQVLQVICQLQTQCTHPSPA*PLPAFP Trigger: CGGAAAGGCCGGAAGCGGCCAGGCCGGAGAAGGGTG...AGTACATTGAGTTTGTAGCTGACAGATTACTTGGAGAACTTGGATTCTCAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
||
| CDS-3UTR CCA 90 bp | CCTCTGAGGACTGGACTAAGGCATGTACTACCACAGCCGAATTCTATAGATTTTGAAGCAGCGAGCCTCTaGAACCTGCACCTCCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: PLRTGLRHVLPQPNSIDFEAASL*NLHLLT Trigger: AGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGCTTC...AAAATCTATAGAATTCGGCTGTGGTAGTACATGCCTTAGTCCAGTCCTCAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | CCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTACTGGATTGGAAAGATaGCGAACCGTCGGGAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: PSSLLISSFEKVSPGMRPTGLER*RTVGNS Trigger: AGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGT...AGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAATTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAG | + |
|
Preference number: 4 (lower is better) Translates to: WNAQPSPSPLTASLFPSQLSLFQ*GRSFDK Trigger: CTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAA...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR CCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAATCAGGATACTGGATTaGAAAGATGACGAACCGTCG | + |
|
Preference number: 4 (lower is better) Translates to: RVCMCTCVRVCYARDLDSIRILD*KDDEPS Trigger: CGACGGTTCGTCATCTTTCCAATCCAGTATCCTGAT...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAGTGAGGGAGGTCCTTTaGCAAGTCAACCTCCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ARILQQMIQRRKFLPQQQVREVL*QVNLLC Trigger: GCAGAGGAGGTTGACTTGTCAAAGGACCTCCCTCAC...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | CCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTTTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAG | + |
|
Preference number: 4 (lower is better) Translates to: PSSLLISSFEKVSPGMRPLSLFQ*GRSFDK Trigger: CTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAA...AGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGCTGTACATCTCTGAGTaGACATTCTCGATGAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRLYISE*TFSMRI Trigger: GATTCTCATCGAGAATGTTCACTCAGAGATGTACAG...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAGAACAGCATCAGCAATaGTTTCCCTCACTCTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: RVCMCTCVRVCYARDLDSEQHQQ*FPSLYL Trigger: AAGATAGAGTGAGGGAAATCATTGCTGATGCTGTTC...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | CGTGTGTGCATGTGTACGTGTGTGCGTGTGTGCTATGCTAGGGATCTGGATTCAATGACTGCAAATCGCTaGTACTCAGAAACTCGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: RVCMCTCVRVCYARDLDSMTANR*YSETRF Trigger: GAAACGAGTTTCTGAGTATCAGCGATTTGCAGTCAT...TGAATCCAGATCCCTAGCATAGCACACACGCACACACGTACACATGCACACACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATGAATATTGCAGCAAATaGTCCAGAGAAGAAAATTCC | + |
|
Preference number: 4 (lower is better) Translates to: GADSLVLCTCGQLLCRLHEYCSK*SREENS Trigger: GGAATTTTCTTCTCTGGATCATTTGCTGCAATATTC...ATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATACAGGCAAAGTCACAGTaGAGTCCTTCATCCCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: MCEIQARPHETPTKRRKIQAKSQ*SPSSLL Trigger: CAGCAGGGATGAAGGACTTCACTGTGACTTTGCCTG...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATAAGGGATTTTCTGCCTaGAAAATCTTTGAGAATCCA | + |
|
Preference number: 4 (lower is better) Translates to: GADSLVLCTCGQLLCRLHKGFSA*KIFENP Trigger: TGGATTCTCAAAGATTTTTCAGGCAGAAAATCCCTT...ATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | CCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCCAGAAAGATGCCTGTaGTTGCTTGTACATTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PSSLLISSFEKVSPGMRPPERCL*LLVHSP Trigger: TGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGG...AGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR CCA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGCAGATATCAGGATACTaGATTGGAAAGATGACGAAC | + |
|
Preference number: 4 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRQISGY*IGKMTN Trigger: GTTCGTCATCTTTCCAATCCAGTATCCTGATATCTG...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | TGGAATGCTCAGCCTTCCCCAAGCCCACTGACTGCATCTCTTTTTCCATCACAAAATCTGCATCCAAGGTaGAGACATTATCTGTGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: WNAQPSPSPLTASLFPSQNLHPR*RHYLWF Trigger: AAACCACAGATAATGTCTTCACCTTGGATGCAGATT...TTGTGATGGAAAAAGAGATGCAGTCAGTGGGCTTGGGGAAGGCTGAGCATTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | CCTCTGAGGACTGGACTAAGGCATGTACTACCACAGCCGAATTCTATAGATTTTTGCTGTCCAGAAAGATaGCTGTGCTTGCTTGTACAT | + |
|
Preference number: 4 (lower is better) Translates to: PLRTGLRHVLPQPNSIDFCCPER*LCLLVH Trigger: ATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCA...AAAATCTATAGAATTCGGCTGTGGTAGTACATGCCTTAGTCCAGTCCTCAGAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATAGGTTTCGGCCATGACTaGAAATCGCTGATACTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: MCEIQARPHETPTKRRKIGFGHD*KSLILR Trigger: TCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACC...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAGAGTGGCTCTTCATTTaGCCTCACCACATTTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: ARILQQMIQRRKFLPQQQEWLFI*PHHIFF Trigger: GAAGAAAATGTGGTGAGGTCAAATGAAGAGCCACTC...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTAAGTCAGTCCAGGCATaGGGCCTCTCTTCTTTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TINMYHIKVPVTTYEEPGKSVQA*GLSSLA Trigger: GGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTT...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATACCAGAAAGATGCCTGTaGTTGCTTGTACATTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: MCEIQARPHETPTKRRKIPERCL*LLVHSP Trigger: TGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGG...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR GCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAATGCTGTCCAGAAAGATaGCTGTGCTTGCTTGTACAT | + |
|
Preference number: 4 (lower is better) Translates to: ARILQQMIQRRKFLPQQQCCPER*LCLLVH Trigger: ATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCA...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR CCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAATCAGGATACTGGATTaGAAAGATGACGAACCGTCG | + |
|
Preference number: 4 (lower is better) Translates to: ARILQQMIQRRKFLPQQQIRILD*KDDEPS Trigger: CGACGGTTCGTCATCTTTCCAATCCAGTATCCTGAT...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
||
| CDS-3UTR TCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTACTGGATTGGAAAGATaGCGAACCGTCGGGAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: TINMYHIKVPVTTYEEPGTGLER*RTVGNS Trigger: AGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGT...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATAAGTGAACATTCTCGATaGGAATCTGAAAGCCATAGA | + |
|
Preference number: 4 (lower is better) Translates to: MCEIQARPHETPTKRRKISEHSR*ESESHR Trigger: TCTATGGCTTTCAGATTCTCATCGAGAATGTTCACT...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
||
| CDS-3UTR TCA 90 bp | ATGTGTGAGATCCAGGCCAGACCACATGAGACACCAACTAAAAGAAGGAAAATATGCCTGAAAAATCTTTaGGAATCCAAGTTCTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: MCEIQARPHETPTKRRKICLKNL*ESKFSK Trigger: CTTGGAGAACTTGGATTCTCAAAGATTTTTCAGGCA...TATTTTCCTTCTTTTAGTTGGTGTCTCATGTGGTCTGGCCTGGATCTCACACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS-3UTR CCA 90 bp | GCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAACAGATATCAGGATACTaGATTGGAAAGATGACGAAC | + |
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Preference number: 4 (lower is better) Translates to: ARILQQMIQRRKFLPQQQQISGY*IGKMTN Trigger: GTTCGTCATCTTTCCAATCCAGTATCCTGATATCTG...TTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
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| CDS-3UTR TCA 90 bp | TTGAGAATCCAAGTTCTCCAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTGAGTGGCTCTTCATTTaGCCTCACCACATTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LRIQVLQVICQLQTQCTVEWLFI*PHHIFF Trigger: GAAGAAAATGTGGTGAGGTCAAATGAAGAGCCACTC...AACAGTACATTGAGTTTGTAGCTGACAGATTACTTGGAGAACTTGGATTCTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153481.2 |
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| 3UTR CAA 72 bp | ATAAAGATGACGTCAACCTTAAATCACTTTCTCAGATaGGCACAAATCCAAAATGGTTCACTAGTCCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: IKMTSTLNHFLR*AQIQNGSLVPP Trigger: GGGAGGGACTAGTGAACCATTTTGGATTTGTGCCAATCTGAGAAAGTGATTTAAGGTTGACGTCATCTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS-3UTR TCA 90 bp | ACTATTAACATGTATCACATAAAGGTTCCTGTCACTACTTATGAAGAACCGGGTGCTGATCAGTTCATTTaGAAAAGTCAGTCCAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: TINMYHIKVPVTTYEEPGADQFI*KSQSRH Trigger: ATGCCTGGACTGACTTTTTCAAATGAACTGATCAGC...ACCCGGTTCTTCATAAGTAGTGACAGGAACCTTTATGTGATACATGTTAATAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS-3UTR TCA 90 bp | TTGACTTTAGAACTAATTTGTCCTGAATGTAGCCCATCAAGAGTTTCCATATCAGTCCTTCATCCCTGCTaGTCAGTTCATTTGAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: LTLELICPECSPSRVSISVLHPC*SVHLKK Trigger: CTTTTTCAAATGAACTGATCAGCAGGGATGAAGGAC...TGATATGGAAACTCTTGATGGGCTACATTCAGGACAAATTAGTTCTAAAGTCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS GCA 90 bp | TCTTCATTTGACCTCACCACATTTTCTTCTGTCTCCGAACACAATTaGTCACCCTTCTCCGGCCTGGCCGCTTCCGGCCTTTCCGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: SSFDLTTFSSVSEHN*SPFSGLAASGLSGS Trigger: CGACCCGGAAAGGCCGGAAGCGGCCAGGCCGGAGAAGGGTGAGCAATTGTGTTCGGAGACAGAAGAAAATGTGGTGAGGTCAAATGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000153481.2 |
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| CDS-3UTR CAA 90 bp | GGTGCTGACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATGATGCCTGTGCTTGCTaGTACATTCTCCAGATATCA | + |
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Preference number: 5 (lower is better) Translates to: GADSLVLCTCGQLLCRLHDACAC*YILQIS Trigger: TGATATCTGGAGAATGTACAAGCAAGCACAGGCATC...ATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTCAGCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS TCA 90 bp | ATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAGTCAACCTCACCCTTCTCCGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: MWEIKYFSSDLSLFQ*GRSFDKSTSPFSGL Trigger: CAGGCCGGAGAAGGGTGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGACGAGAAGTATTTTATCTCCCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137636.8 |
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| CDS-3UTR CAA 90 bp | CCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTGATGCCTGTGCTTGCTaGTACATTCTCCAGATATCA | + |
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Preference number: 5 (lower is better) Translates to: PSSLLISSFEKVSPGMRPDACAC*YILQIS Trigger: TGATATCTGGAGAATGTACAAGCAAGCACAGGCATC...AGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144498.8 |
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| CDS-3UTR CAA 90 bp | GACAGCCTTGTGTTGTGTACATGTGGGCAGCTGCTTTGCAGACTGCATTCTAGGCTGCCTGAAAAATCTTaGAGAATCCAAGTTCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: DSLVLCTCGQLLCRLHSRLPEKS*RIQVLQ Trigger: TTGGAGAACTTGGATTCTCAAAGATTTTTCAGGCAG...CCTAGAATGCAGTCTGCAAAGCAGCTGCCCACATGTACACAACACAAGGCTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022901.16 |
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| CDS TCA 90 bp | ATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAGTCAACCTCCTCTGCTGTCCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: MWEIKYFSSDLSLFQ*GRSFDKSTSSAVQK Trigger: TTTCTGGACAGCAGAGGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGACGAGAAGTATTTTATCTCCCACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145155.2 ENSMUST00000145175.3 |
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| CDS TCA 90 bp | CTTGCTTGTACATTCTCCAGATATCAGGATACTGGATTGGAAAGATaGCGAACCGTCGGGAACTCTTTCTTAGGAGTGGCTCTTCATTTG | + |
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Preference number: 5 (lower is better) Translates to: LACTFSRYQDTGLER*RTVGNSFLGVALHL Trigger: CAAATGAAGAGCCACTCCTAAGAAAGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS GCA 90 bp | TTTGACAAGTCAACCTCCTCTGCTGTCCAGAAAGATGCCTGTGCTTaGTTGTACATTCTCCAGATATCAGGATACTGGATTGGAAAGATG | + |
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Preference number: 5 (lower is better) Translates to: FDKSTSSAVQKDACA*LYILQISGYWIGKM Trigger: CATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCAGAGGAGGTTGACTTGTCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS CCA 90 bp | AAAGATGCCTGTGCTTGCTTGTACATTCTCCAGATATCAGGATACTaGATTGGAAAGATGACGAACCGTCGGGAACTCTTTCTTAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: KDACACLYILQISGY*IGKMTNRRELFLRS Trigger: ACTCCTAAGAAAGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS TCA 90 bp | AGGCTTCTGTTAAAAACTCCTGCTCGATTTGAACAGCATCAGCAATaGTTTCCCTCACTCTATCTTCTGAAGGCTTGTTTACCAAGTACT | + |
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Preference number: 5 (lower is better) Translates to: RLLLKTPARFEQHQQ*FPSLYLLKACLPST Trigger: AGTACTTGGTAAACAAGCCTTCAGAAGATAGAGTGAGGGAAATCATTGCTGATGCTGTTCAAATCGAGCAGGAGTTTTTAACAGAAGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000137636.8 ENSMUST00000146821.8 |
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| CDS TCA 72 bp | GTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTaGCAAGTCAACCTCACCCTTCTCCGGCCTGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VGFKLVPVREVL*QVNLTLLRPGR Trigger: GCGGCCAGGCCGGAGAAGGGTGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137636.8 |
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| CDS GCA 72 bp | GACCTCACCACATTTTCTTCTGTCTCCGAACACAATTaGTCACCCTTCTCCGGCCTGGCCGCTTCCGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: DLTTFSSVSEHN*SPFSGLAASGL Trigger: AAGGCCGGAAGCGGCCAGGCCGGAGAAGGGTGAGCAATTGTGTTCGGAGACAGAAGAAAATGTGGTGAGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000153481.2 |
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| CDS CAA 90 bp | GACAAGTCAACCTCCTCTGCTGTCCAGAAAGATGCCTGTGCTTGCTaGTACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACG | + |
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Preference number: 6 (lower is better) Translates to: DKSTSSAVQKDACAC*YILQISGYWIGKMT Trigger: CGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCAGAGGAGGTTGACTTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS GCA 72 bp | CAAGTCAACCTCCTCTGCTGTCCAGAAAGATGCCTGTaGTTGCTTGTACATTCTCCAGATATCAGGATACTG | + |
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Preference number: 6 (lower is better) Translates to: QVNLLCCPERCL*LLVHSPDIRIL Trigger: CAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCAGAGGAGGTTGACTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS CAA 72 bp | GTCAACCTCCTCTGCTGTCCAGAAAGATGCCTGTGCTaGCTTGTACATTCTCCAGATATCAGGATACTGGAT | + |
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Preference number: 6 (lower is better) Translates to: VNLLCCPERCLC*LVHSPDIRILD Trigger: ATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCAGAGGAGGTTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS TCA 72 bp | ACATTCTCCAGATATCAGGATACTGGATTGGAAAGATaGCGAACCGTCGGGAACTCTTTCTTAGGAGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: TFSRYQDTGLER*RTVGNSFLGVA Trigger: AGCCACTCCTAAGAAAGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS GCA 72 bp | TCAACCTCCTCTGCTGTCCAGAAAGATGCCTGTGCTTaGTTGTACATTCTCCAGATATCAGGATACTGGATT | + |
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Preference number: 6 (lower is better) Translates to: STSSAVQKDACA*LYILQISGYWI Trigger: AATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACAGGCATCTTTCTGGACAGCAGAGGAGGTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS TCA 72 bp | ATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAGTCAACCTCCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: IKYFSSDLSLFQ*GRSFDKSTSSA Trigger: AGCAGAGGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGACGAGAAGTATTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145155.2 ENSMUST00000145175.3 |
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| CDS TCA 72 bp | ATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTaGGGGAGGTCCTTTGACAAGTCAACCTCACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: IKYFSSDLSLFQ*GRSFDKSTSPF Trigger: GAAGGGTGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGACGAGAAGTATTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137636.8 |
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| CDS CCA 72 bp | TGTGCTTGCTTGTACATTCTCCAGATATCAGGATACTaGATTGGAAAGATGACGAACCGTCGGGAACTCTTT | + |
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Preference number: 6 (lower is better) Translates to: CACLYILQISGY*IGKMTNRRELF Trigger: AAAGAGTTCCCGACGGTTCGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTACAAGCAAGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000144498.8 ENSMUST00000145175.3 |
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| CDS TCA 72 bp | TTAAAAACTCCTGCTCGATTTGAACAGCATCAGCAATaGTTTCCCTCACTCTATCTTCTGAAGGCTTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LKTPARFEQHQQ*FPSLYLLKACL Trigger: TAAACAAGCCTTCAGAAGATAGAGTGAGGGAAATCATTGCTGATGCTGTTCAAATCGAGCAGGAGTTTTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022901.16 ENSMUST00000137636.8 ENSMUST00000146821.8 |
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