Pregenerated sensors for RRM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020649Ensembl transcript IDs: ENSMUST00000020980.12, ENSMUST00000153058.8, ENSMUST00000154588.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGTGCAAAGTGCCAATTTTATTTACAAACTTGTTAAGTAGACCCTaGATGCCTGCAGGAAGCAGTCCGACATCTTTAAACAGCCCTAAA | + |
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Preference number: 1 (lower is better) Translates to: VCKVPILFTNLLSRP*MPAGSSPTSLNSPK Trigger: TTTAGGGCTGTTTAAAGATGTCGGACTGCTTCCTGCAGGCATGCAGGGTCTACTTAACAAGTTTGTAAATAAAATTGGCACTTTGCACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR CAA 90 bp | GCACTATGTGTGTGTGTGTGCAAAGTGCCAATTTTATTTACAAACTaGTTAAGTAGACCCTGCATGCCTGCAGGAAGCAGTCCGACATCT | + |
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Preference number: 2 (lower is better) Translates to: ALCVCVCKVPILFTN*LSRPCMPAGSSPTS Trigger: AGATGTCGGACTGCTTCCTGCAGGCATGCAGGGTCTACTTAACAAGTTTGTAAATAAAATTGGCACTTTGCACACACACACACATAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR-3UTR GCA 90 bp | TTTACAAACTTGTTAAGTAGACCCTGCATGCCTGCAGGAAGCAGTCCGACATCTATGTTTAAACCTGCTTaGTTGATGGTCACTGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: FTNLLSRPCMPAGSSPTSMFKPA*LMVTAP Trigger: AGGAGCAGTGACCATCAAGCAAGCAGGTTTAAACAT...AGATGTCGGACTGCTTCCTGCAGGCATGCAGGGTCTACTTAACAAGTTTGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR-3UTR CCA 90 bp | GATGAGGTCAAAGGTGACCACACTACTTGTAAAAGCCAAGGACAGGATCTCCCTGTTGGTTGTTTTTGCTaGTTTCTTTTAATGGCAAGG | + |
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Preference number: 2 (lower is better) Translates to: DEVKGDHTTCKSQGQDLPVGCFC*FLLMAR Trigger: CCTTGCCATTAAAAGAAACCAGCAAAAACAACCAAC...AGGGAGATCCTGTCCTTGGCTTTTACAAGTAGTGTGGTCACCTTTGACCTCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR TCA 72 bp | CACGGGTGTACCCACCACTGGGCTCAAACTCACTTGTaGATTCCGTACAGCCAGGGCTATACAGAGAAACTC | + |
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Preference number: 3 (lower is better) Translates to: HGCTHHWAQTHL*IPYSQGYTEKL Trigger: GAGTTTCTCTGTATAGCCCTGGCTGTACGGAATTCACAAGTGAGTTTGAGCCCAGTGGTGGGTACACCCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR CCA 72 bp | GTAAACTACCTCAGGGAACACTTGCTTTTCCTGTTTTaGTTTGTAAGAGTCCCACGGGTGTACCCACCACTG | + |
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Preference number: 3 (lower is better) Translates to: VNYLREHLLFLF*FVRVPRVYPPL Trigger: CAGTGGTGGGTACACCCGTGGGACTCTTACAAACCAAAACAGGAAAAGCAAGTGTTCCCTGAGGTAGTTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR CCA 72 bp | AAACCTGCTTGCTTGATGGTCACTGCTCCTAAAACCTaGCCCAGTGCTGTTAGTACTTTGATGAGGTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: KPACLMVTAPKT*PSAVSTLMRSK Trigger: CTTTGACCTCATCAAAGTACTAACAGCACTGGGCCAGGTTTTAGGAGCAGTGACCATCAAGCAAGCAGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR-3UTR CAA 90 bp | GATGAGGTCAAAGGTGACCACACTACTTGTAAAAGCCAAGGACAGGATCTCCCTGCCAGTTGGTTGTTTTaGCTGGTTTCTTTTAATGGC | + |
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Preference number: 3 (lower is better) Translates to: DEVKGDHTTCKSQGQDLPASWLF*LVSFNG Trigger: GCCATTAAAAGAAACCAGCAAAAACAACCAACTGGC...AGGGAGATCCTGTCCTTGGCTTTTACAAGTAGTGTGGTCACCTTTGACCTCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR TCA 72 bp | GAGGTACTACCTCATAAAATGTATAGTTTAATCGCCTaGCAGCACTATGTGTGTGTGTGTGCAAAGTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: EVLPHKMYSLIA*QHYVCVCAKCQ Trigger: TTGGCACTTTGCACACACACACACATAGTGCTGTCAGGCGATTAAACTATACATTTTATGAGGTAGTACCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR GCA 72 bp | GTGCCAATTTTATTTACAAACTTGTTAAGTAGACCCTaGATGCCTGCAGGAAGCAGTCCGACATCTTTAAAC | + |
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Preference number: 3 (lower is better) Translates to: VPILFTNLLSRP*MPAGSSPTSLN Trigger: GTTTAAAGATGTCGGACTGCTTCCTGCAGGCATGCAGGGTCTACTTAACAAGTTTGTAAATAAAATTGGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR CCA 72 bp | TTTAGACACCTGTTTAGCAAATTTAATGACAATTCATaGTGTAGCCAGTTGGTTGTTTTTGCTGGTTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: FRHLFSKFNDNS*CSQLVVFAGFF Trigger: AAAGAAACCAGCAAAAACAACCAACTGGCTACACCATGAATTGTCATTAAATTTGCTAAACAGGTGTCTAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR GCA 90 bp | AACTACCTCAGGGAACACTTGCTTTTCCTGTTTTGGTTTGTAAGAGTCCCACGGTTCTCCTCGCAGCTTTaGTGGCCAGGACGCGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: NYLREHLLFLFWFVRVPRFSSQL*WPGRGC Trigger: GCACCCGCGTCCTGGCCAGCAAAGCTGCGAGGAGAA...CCGTGGGACTCTTACAAACCAAAACAGGAAAAGCAAGTGTTCCCTGAGGTAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR CCA 90 bp | AAGGTGACCACACTACTTGTAAAAGCCAAGGACAGGATCTCCCTAAGGATCCAAAACTGCAGCTGCTGCTaGTCAGCGATGGTGGCGAGC | + |
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Preference number: 4 (lower is better) Translates to: KVTTLLVKAKDRISLRIQNCSCC*SAMVAS Trigger: GCTCGCCACCATCGCTGACCAGCAGCAGCTGCAGTT...TTGGATCCTTAGGGAGATCCTGTCCTTGGCTTTTACAAGTAGTGTGGTCACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR CCA 90 bp | TTGTTTGAAGTATACTTTCTTCTAGTGACCAGCCTGGCAAACAGGACTGAGGTATCCTCGCAGCTTTGCTaGCCAGGACGCGGGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LFEVYFLLVTSLANRTEVSSQLC*PGRGCC Trigger: GCAGCACCCGCGTCCTGGCCAGCAAAGCTGCGAGGA...TACCTCAGTCCTGTTTGCCAGGCTGGTCACTAGAAGAAAGTATACTTCAAACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR CCA 90 bp | CTACCTCAGGGAACACTTGCTTTTCCTGTTTTGGTTTGTAAGAGTCCCACGGGTAGCTCGGCGGAGTCCTaGAAGATTCTCCTCGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LPQGTLAFPVLVCKSPTGSSAES*KILLAA Trigger: AGCTGCGAGGAGAATCTTCCAGGACTCCGCCGAGCT...ACCCGTGGGACTCTTACAAACCAAAACAGGAAAAGCAAGTGTTCCCTGAGGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR GCA 90 bp | ATTCATGGTGTAGCCAGTTGGTTGTTTTTGCTGGTTTCTTTTAATGGCAAGGGGTCGGACCCTCTGCTCTaGTGGCTTGTGTACCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: IHGVASWLFLLVSFNGKGSDPLL*WLVYQV Trigger: CACCTGGTACACAAGCCAGCAGAGCAGAGGGTCCGA...CCCCTTGCCATTAAAAGAAACCAGCAAAAACAACCAACTGGCTACACCATGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR GCA 90 bp | GGGTTATGTCAGTTCATGAGGAAGCTAGATCACAGTAAACTACCTCAGGGAACATCCGTGAGGAACTCCTaGTCTATCCTAACGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: GLCQFMRKLDHSKLPQGTSVRNS*SILTAL Trigger: CAACGCCGTTAGGATAGAGCAGGAGTTCCTCACGGA...TGTTCCCTGAGGTAGTTTACTGTGATCTAGCTTCCTCATGAACTGACATAACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR TCA 90 bp | AACTACCTCAGGGAACACTTGCTTTTCCTGTTTTGGTTTGTAAGAGTCCCACGGCTGTCGAATTCGACATaGCTCCCATCCTCTGATACT | + |
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Preference number: 4 (lower is better) Translates to: NYLREHLLFLFWFVRVPRLSNST*LPSSDT Trigger: AGTATCAGAGGATGGGAGTCATGTCGAATTCGACAG...CCGTGGGACTCTTACAAACCAAAACAGGAAAAGCAAGTGTTCCCTGAGGTAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR GCA 90 bp | AGCAAATTTAATGACAATTCATGGTGTAGCCAGTTGGTTGTTTTTGCTGGTTTCGGCGACAACTGCAGCTaGTGCTGGTCAGCGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: SKFNDNSWCSQLVVFAGFGDNCS*CWSAMV Trigger: CACCATCGCTGACCAGCAGCAGCTGCAGTTGTCGCC...GAAACCAGCAAAAACAACCAACTGGCTACACCATGAATTGTCATTAAATTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR TCA 90 bp | TTTAGCAAATTTAATGACAATTCATGGTGTAGCCAGTTGGTTGTTTTTGCTGGTTGCAGTTCATCCCGATaGGCTTCACGGGCAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: FSKFNDNSWCSQLVVFAGCSSSR*ASRARP Trigger: AGGCCTTGCCCGTGAAGCTCATCGGGATGAACTGCA...ACCAGCAAAAACAACCAACTGGCTACACCATGAATTGTCATTAAATTTGCTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| 3UTR CAA 72 bp | ACTGCTCCTAAAACCTGGCCCAGTGCTGTTAGTACTTaGATGAGGTCAAAGGTGACCACACTACTTGTAAAA | + |
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Preference number: 4 (lower is better) Translates to: TAPKTWPSAVST*MRSKVTTLLVK Trigger: TTTTACAAGTAGTGTGGTCACCTTTGACCTCATCAAAGTACTAACAGCACTGGGCCAGGTTTTAGGAGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS-3UTR TCA 90 bp | TGTTTAGCAAATTTAATGACAATTCATGGTGTAGCCAGTTGGTTGTTTTTGCTGCTGTCGAATTCGACATaGCTCCCATCCTCTGATACT | + |
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Preference number: 4 (lower is better) Translates to: CLANLMTIHGVASWLFLLLSNST*LPSSDT Trigger: AGTATCAGAGGATGGGAGTCATGTCGAATTCGACAG...CAGCAAAAACAACCAACTGGCTACACCATGAATTGTCATTAAATTTGCTAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020980.12 ENSMUST00000154588.2 |
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| CDS-3UTR CAA 90 bp | GCAAATTTAATGACAATTCATGGTGTAGCCAGTTGGTTGTTTTTGCTGGTTTCTTCTACTCTGAAAATCTaGTTAAAACCCAGCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ANLMTIHGVASWLFLLVSSTLKI*LKPSSS Trigger: GCTGGAGCTGGGTTTTAACAAGATTTTCAGAGTAGA...AGAAACCAGCAAAAACAACCAACTGGCTACACCATGAATTGTCATTAAATTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020980.12 ENSMUST00000154588.2 |
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| CDS-3UTR CAA 90 bp | AGGGCAAATGTCAGAATTTACTGTACCATCATAGCATTTGCAAACTTCAAGATATCTACTCTGAAAATCTaGTTAAAACCCAGCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RANVRIYCTIIAFANFKISTLKI*LKPSSS Trigger: GCTGGAGCTGGGTTTTAACAAGATTTTCAGAGTAGA...TATCTTGAAGTTTGCAAATGCTATGATGGTACAGTAAATTCTGACATTTGCCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS CAA 72 bp | GCCTCCGTGAGGAACTCCTGCTCTATCCTAACGGCGTaGGTGATTATCTCTCGGACCCTCTGCTCTGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: ASVRNSCSILTA*VIISRTLCSAG Trigger: GCCAGCAGAGCAGAGGGTCCGAGAGATAATCACCAACGCCGTTAGGATAGAGCAGGAGTTCCTCACGGAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020980.12 |
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| CDS CAA 90 bp | CGGCTCATCCTCAACGCTGGGGTTAGTAGGCGCTTTACTTTCCTGTaGGATGAGAGAGAGTGCCAAGTGAACCAACCCCCAAATGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: RLILNAGVSRRFTFL*DERECQVNQPPNAN Trigger: GTTGGCATTTGGGGGTTGGTTCACTTGGCACTCTCTCTCATCCAACAGGAAAGTAAAGCGCCTACTAACCCCAGCGTTGAGGATGAGCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153058.8 |
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