Pregenerated sensors for RRH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028012Ensembl transcript IDs: ENSMUST00000029648.11, ENSMUST00000171313.8, ENSMUST00000196902.5, ENSMUST00000197535.2, ENSMUST00000200079.5
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTTCCAAAACAAGCCCACAAGCACACGATGGAATAAGGGGACCATaGCAGCAGAAACATCAGTATCATTATCACAGACATCTTTGTTAC | + |
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Preference number: 1 (lower is better) Translates to: VSKTSPQAHDGIRGP*QQKHQYHYHRHLCY Trigger: GTAACAAAGATGTCTGTGATAATGATACTGATGTTTCTGCTGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGGCTTGTTTTGGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR GCA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTGCTCAGTTGGAGGAGTaGCTGCCTGGCATGGACAAA | + |
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Preference number: 2 (lower is better) Translates to: SSAHSRCVRATAPVRTCPAQLEE*LPGMDK Trigger: TTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGC...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTGGCATGGACAAAGCCTGGATGACACCATCTGCAGGTaGATGGACGCCAGTCTGATA | + |
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Preference number: 2 (lower is better) Translates to: WVCSSVGGVPAWHGQSLDDTICR*MDASLI Trigger: TATCAGACTGGCGTCCATTCACCTGCAGATGGTGTC...ATCCAGGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCCTGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTGGCATGGACAAAGCCGCAATAGGCTATGTCTaGACTTGGTTCAAATGGATC | + |
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Preference number: 2 (lower is better) Translates to: KPGFAAQLEECLPGMDKAAIGYV*TWFKWI Trigger: GATCCATTTGAACCAAGTGCAGACATAGCCTATTGC...GGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCAGGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCCTGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTGGCATGGACAAAGCCAAATGGTGTTTTATATaGGTGCCTGTAAGCTCGTCA | + |
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Preference number: 2 (lower is better) Translates to: KPGFAAQLEECLPGMDKAKWCFI*VPVSSS Trigger: TGACGAGCTTACAGGCACTCATATAAAACACCATTT...GGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCAGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR CCA 90 bp | GCATTTAAACATGGCCAACATGGCCTTCCGAAACTTCTTATGCGCAGCCACGTACCCACAAGCACACGATaGAATAAGGGGACCATGCCA | + |
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Preference number: 2 (lower is better) Translates to: AFKHGQHGLPKLLMRSHVPTSTR*NKGTMP Trigger: TGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGG...TACGTGGCTGCGCATAAGAAGTTTCGGAAGGCCATGTTGGCCATGTTTAAATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR CCA 90 bp | AGATCCTCACAGGAGCCAATGAGCTCTGAGGCATATCCATTGGTAGAGTACTTGTTTGTTACATCTGCCTaGTCTGCCCAGTCTCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: RSSQEPMSSEAYPLVEYLFVTSA*SAQSLW Trigger: CCACAGAGACTGGGCAGACCAGGCAGATGTAACAAA...CAAGTACTCTACCAATGGATATGCCTCAGAGCTCATTGGCTCCTGTGAGGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR TCA 90 bp | AGATCCTCACAGGAGCCAATGAGCTCTGAGGCATATCCATTGGTAGAGTACTTGTCAGGCACTGCTAGGTaGGGTTGGCATTTAAACATG | + |
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Preference number: 2 (lower is better) Translates to: RSSQEPMSSEAYPLVEYLSGTAR*GWHLNM Trigger: CATGTTTAAATGCCAACCTCACCTAGCAGTGCCTGA...CAAGTACTCTACCAATGGATATGCCTCAGAGCTCATTGGCTCCTGTGAGGATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR GCA 90 bp | CACGTAAATACAGGGGTTGTAGAACGTAGAGGATTTTGCAAACAGTGGAGCTATTACATCTGCCTGGTCTaGCCAGTCTCTGTGGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: HVNTGVVERRGFCKQWSYYICLV*PVSVEV Trigger: CACCTCCACAGAGACTGGGCAGACCAGGCAGATGTA...ATAGCTCCACTGTTTGCAAAATCCTCTACGTTCTACAACCCCTGTATTTACGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTACTGAAGCCTGGGTTTaGAGCTCAGTTGGAGGAGTG | + |
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Preference number: 2 (lower is better) Translates to: AQERSFLMKAIVSVQSYVTEAWV*SSVGGV Trigger: CACTCCTCCAACTGAGCTGCAAACCCAGGCTTCAGT...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCAGAGTTGGGCTGGCTaGGTGGGAGGAACCTACCAT | + |
|
Preference number: 2 (lower is better) Translates to: SGILIAVSSLMENLVKLQQSWAG*VGGTYH Trigger: ATGGTAGGTTCCTCCCACTCAGCCAGCCCAACTCTG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR CCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGTTGGGCTGGCTGAGTaGGAGGAACCTACCATCCAG | + |
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Preference number: 2 (lower is better) Translates to: SGILIAVSSLMENLVKLQVGLAE*EEPTIQ Trigger: CTGGATGGTAGGTTCCTCCCACTCAGCCAGCCCAAC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCTGCTTAATTATCCTTaGGGACATAGTGAAGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: SGILIAVSSLMENLVKLQLLNYP*GHSEGS Trigger: AGAGCCTTCACTATGTCCTCAAGGATAATTAAGCAG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGCAATAGGCTATGTCTaGACTTGGTTCAAATGGATC | + |
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Preference number: 2 (lower is better) Translates to: SGILIAVSSLMENLVKLQAIGYV*TWFKWI Trigger: GATCCATTTGAACCAAGTGCAGACATAGCCTATTGC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGTAGTTTTGTGTGCCTaGTTAATTATCCTTGAGGAC | + |
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Preference number: 2 (lower is better) Translates to: SGILIAVSSLMENLVKLQVVLCA*LIILED Trigger: GTCCTCAAGGATAATTAAGCAGGCACACAAAACTAC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR TCA 72 bp | CAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTaGGAACCTGTCCTGAGTCTCTCCCAGATCGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: QPTPGVSELLLQ*EPVLSLSQIAS Trigger: TGAGGCGATCTGGGAGAGACTCAGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR CCA 72 bp | GCCTGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTaGCATGGACAAAGCCTGGATCCTATCTCTAGCACC | + |
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Preference number: 3 (lower is better) Translates to: AWVCSSVGGVPA*HGQSLDPISST Trigger: GGTGCTAGAGATAGGATCCAGGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR GCA 72 bp | GAACTGAAGCCTGGGTTTGCAGCTCAGTTGGAGGAGTaGCTGCCTGGCATGGACAAAGCCTGGATCCTATCT | + |
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Preference number: 3 (lower is better) Translates to: ELKPGFAAQLEE*LPGMDKAWILS Trigger: AGATAGGATCCAGGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCAGGCTTCAGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR-3UTR CAA 90 bp | TGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTGGCATGGACAAAGCCTGGATAGGCTATGTCTGCACTaGGTTCAAATGGATCCATAT | + |
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Preference number: 3 (lower is better) Translates to: WVCSSVGGVPAWHGQSLDRLCLH*VQMDPY Trigger: ATATGGATCCATTTGAACCAAGTGCAGACATAGCCT...ATCCAGGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR TCA 72 bp | TCCATTGGTAGAGTACTTGGCTCAGGCACTGCTAGGTaGGGTTGGCATTTAAACATGGCCAACATGGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: SIGRVLGSGTAR*GWHLNMANMAF Trigger: GAAGGCCATGTTGGCCATGTTTAAATGCCAACCTCACCTAGCAGTGCCTGAGCCAAGTACTCTACCAATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR CCA 72 bp | AGTATCATTATCACAGACATCTTTGTTACATCTGCCTaGTCTGCCCAGTCTCTGTGGAGGTGTGCAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SIIITDIFVTSA*SAQSLWRCAVQ Trigger: CTGCACTGCACACCTCCACAGAGACTGGGCAGACCAGGCAGATGTAACAAAGATGTCTGTGATAATGATACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR GCA 72 bp | GAGTCTCTCCCAGATCGCCTCAGTATGCATAAGATGTaGCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGT | + |
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Preference number: 3 (lower is better) Translates to: ESLPDRLSMHKM*PRAFLSNEGNC Trigger: ACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGCACATCTTATGCATACTGAGGCGATCTGGGAGAGACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR GCA 72 bp | ACAAGCCCACAAGCACACGATGGAATAAGGGGACCATaGCAGCAGAAACATCAGTATCATTATCACAGACAT | + |
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Preference number: 3 (lower is better) Translates to: TSPQAHDGIRGP*QQKHQYHYHRH Trigger: ATGTCTGTGATAATGATACTGATGTTTCTGCTGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGGCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGACTCTTCAAGCAGAGTaGGGCTGGCTGAGTGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: SGILIAVSSLMENLVKLQTLQAE*GWLSGR Trigger: CCTCCCACTCAGCCAGCCCAACTCTGCTTGAAGAGT...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR TCA 72 bp | AGAGACTGTAGTTTTGTGTGCCTGCTTAATTATCCTTaGGGACATAGTGAAGGCTCTACGGCAACAACTCTT | + |
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Preference number: 3 (lower is better) Translates to: RDCSFVCLLNYP*GHSEGSTATTL Trigger: AAGAGTTGTTGCCGTAGAGCCTTCACTATGTCCTCAAGGATAATTAAGCAGGCACACAAAACTACAGTCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR CAA 90 bp | CACGTAAATACAGGGGTTGTAGAACGTAGAGGATTTTGCAAACAGTGGAGCTATTTATCACAGACATCTTaGTTACATCTGCCTGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: HVNTGVVERRGFCKQWSYLSQTS*LHLPGL Trigger: CAGACCAGGCAGATGTAACAAAGATGTCTGTGATAA...ATAGCTCCACTGTTTGCAAAATCCTCTACGTTCTACAACCCCTGTATTTACGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGAGGCTATGTCTGCACTaGGTTCAAATGGATCCATAT | + |
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Preference number: 3 (lower is better) Translates to: SGILIAVSSLMENLVKLQRLCLH*VQMDPY Trigger: ATATGGATCCATTTGAACCAAGTGCAGACATAGCCT...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGAAAGAGACTGTAGTTTaGTGTGCCTGCTTAATTATC | + |
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Preference number: 3 (lower is better) Translates to: SGILIAVSSLMENLVKLQKETVV*CACLII Trigger: GATAATTAAGCAGGCACACAAAACTACAGTCTCTTT...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR TCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCCGCCCAGGATCATGCTaGGGTAAGTGTTGGTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSRPGSC*GKCWWS Trigger: TGACCACCAACACTTACCTCAGCATGATCCTGGGCG...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR GCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCTACATCTGCCTGGTCTaGCCAGTCTCTGTGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSYICLV*PVSVEV Trigger: CACCTCCACAGAGACTGGGCAGACCAGGCAGATGTA...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR GCA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTGTCTCTGTGGAGGTGTaGAGTGCAGTCACTAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: SSAHSRCVRATAPVRTCPVSVEV*SAVTSG Trigger: GCCGCTAGTGACTGCACTGCACACCTCCACAGAGAC...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR CCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCCCCACAAGCACACGATaGAATAAGGGGACCATGCCA | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSPTSTR*NKGTMP Trigger: TGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGG...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR TCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCACTTCCATGCAGATCTaGAGCCGCAGACATGGGATA | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSTSMQI*SRRHGI Trigger: TATCCCATGTCTGCGGCTTCAGATCTGCATGGAAGT...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR GCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCCAGGTTGATAATCACTaGATTGGTGGGTGTCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSQVDNH*IGGCPQ Trigger: CTGCGGACACCCACCAATGCAGTGATTATCAACCTG...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR CCA 90 bp | GCCGTCTCCCTAAGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCTTTGTTACATCTGCCTaGTCTGCCCAGTCTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: AVSLRLLSPLQVCQSYCSFVTSA*SAQSLW Trigger: CCACAGAGACTGGGCAGACCAGGCAGATGTAACAAA...GGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCTTAGGGAGACGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR TCA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTCCTCACAGGAGCCAATaGGCTCTGAGGCATATCCAT | + |
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Preference number: 4 (lower is better) Translates to: SSAHSRCVRATAPVRTCPPHRSQ*ALRHIH Trigger: ATGGATATGCCTCAGAGCTCATTGGCTCCTGTGAGG...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR GCA 90 bp | TGGGTTTGCAGCTCAGTTGGAGGAGTGCCTGCCTGGCATGGACAAAGCCTGGATGCCGCTATGACGCTGTaGTCAGTCCTTGAAAAGACA | + |
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Preference number: 4 (lower is better) Translates to: WVCSSVGGVPAWHGQSLDAAMTL*SVLEKT Trigger: TGTCTTTTCAAGGACTGAGCACAGCGTCATAGCGGC...ATCCAGGCTTTGTCCATGCCAGGCAGGCACTCCTCCAACTGAGCTGCAAACCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR CAA 72 bp | AGTGAAGGCTCTACGGCAACAACTCTTCAAGCAGAGTaGGGCTGGCTGAGTGGGAGGAACCTACCATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SEGSTATTLQAE*GWLSGRNLPSS Trigger: ACTGGATGGTAGGTTCCTCCCACTCAGCCAGCCCAACTCTGCTTGAAGAGTTGTTGCCGTAGAGCCTTCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR TCA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTTCAGGCACTGCTAGGTaGGGTTGGCATTTAAACATG | + |
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Preference number: 4 (lower is better) Translates to: SSAHSRCVRATAPVRTCPSGTAR*GWHLNM Trigger: CATGTTTAAATGCCAACCTCACCTAGCAGTGCCTGA...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| 3UTR CAA 72 bp | TCCTCACAGGAGCCAATGAGCTCTGAGGCATATCCATaGGTAGAGTACTTGGCTCAGGCACTGCTAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SSQEPMSSEAYP*VEYLAQALLGE Trigger: CTCACCTAGCAGTGCCTGAGCCAAGTACTCTACCAATGGATATGCCTCAGAGCTCATTGGCTCCTGTGAGGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR GCA 90 bp | AGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGAATTTCCAACTTCCATaGAGATCTGAAGCCGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: RLLSPLQVCQSYCSSENLNFQLP*RSEAAD Trigger: GTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATT...CAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR TCA 90 bp | AAACCCCTACTTAAGGATGAACTGAAGCCTGGGTTTGCAGCTCAGTTGGAGGAGGCTGTGCTCAGTCCTTaGAAAGACAGAACCTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: KPLLKDELKPGFAAQLEEAVLSP*KDRTFA Trigger: AGCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGC...CTCCTCCAACTGAGCTGCAAACCCAGGCTTCAGTTCATCCTTAAGTAGGGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR TCA 90 bp | TTGGCATTTAAACATGGCCAACATGGCCTTCCGAAACTTCTTATGCGCAGCCACGCTGTGCTCAGTCCTTaGAAAGACAGAACCTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: LAFKHGQHGLPKLLMRSHAVLSP*KDRTFA Trigger: AGCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGC...GTGGCTGCGCATAAGAAGTTTCGGAAGGCCATGTTGGCCATGTTTAAATGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR GCA 90 bp | AAACCCCTACTTAAGGATGAACTGAAGCCTGGGTTTGCAGCTCAGTTGGAGGAGGAAGATATTCAGTCCTaGATAAATCTGACAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KPLLKDELKPGFAAQLEEEDIQS*INLTAC Trigger: GCAGGCTGTCAGATTTATGCAGGACTGAATATCTTC...CTCCTCCAACTGAGCTGCAAACCCAGGCTTCAGTTCATCCTTAAGTAGGGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR GCA 90 bp | AATACAGGGGTTGTAGAACGTAGAGGATTTTGCAAACAGTGGAGCTATGATAGCGCCGCTATGACGCTGTaGTCAGTCCTTGAAAAGACA | + |
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Preference number: 4 (lower is better) Translates to: NTGVVERRGFCKQWSYDSAAMTL*SVLEKT Trigger: TGTCTTTTCAAGGACTGAGCACAGCGTCATAGCGGC...GCTATCATAGCTCCACTGTTTGCAAAATCCTCTACGTTCTACAACCCCTGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR GCA 90 bp | AAACCCCTACTTAAGGATGAACTGAAGCCTGGGTTTGCAGCTCAGTTGGAGGAGGAACGTAGAGGATTTTaGAAACAGTGGAGCTATGAT | + |
|
Preference number: 4 (lower is better) Translates to: KPLLKDELKPGFAAQLEEERRGF*KQWSYD Trigger: ATCATAGCTCCACTGTTTGCAAAATCCTCTACGTTC...CTCCTCCAACTGAGCTGCAAACCCAGGCTTCAGTTCATCCTTAAGTAGGGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
||
| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGTCTCTGTGGAGGTGTaGAGTGCAGTCACTAGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQVSVEV*SAVTSG Trigger: GCCGCTAGTGACTGCACTGCACACCTCCACAGAGAC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCGCCCAGGATCATGCTaGGGTAAGTGTTGGTGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQRPGSC*GKCWWS Trigger: TGACCACCAACACTTACCTCAGCATGATCCTGGGCG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTACATCTGCCTGGTCTaGCCAGTCTCTGTGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQYICLV*PVSVEV Trigger: CACCTCCACAGAGACTGGGCAGACCAGGCAGATGTA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR GCA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTGGAATAAGGGGACCATaGCAGCAGAAACATCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: AQERSFLMKAIVSVQSYVGIRGP*QQKHQY Trigger: ATACTGATGTTTCTGCTGGCATGGTCCCCTTATTCC...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR CCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCCACTGCCCTCCTCTTaGCTCCACCAGCATTGCATA | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQPLPSS*LHQHCI Trigger: TATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCCTCACAGGAGCCAATaGGCTCTGAGGCATATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQPHRSQ*ALRHIH Trigger: ATGGATATGCCTCAGAGCTCATTGGCTCCTGTGAGG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR GCA 90 bp | CAGCAGAAACATCAGTATCATTATCACAGACATCTTTGTTACATCTGCCTGGTCAATTTCCAACTTCCATaGAGATCTGAAGCCGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: QQKHQYHYHRHLCYICLVNFQLP*RSEAAD Trigger: GTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATT...GACCAGGCAGATGTAACAAAGATGTCTGTGATAATGATACTGATGTTTCTGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR CCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCCCACAAGCACACGATaGAATAAGGGGACCATGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQPTSTR*NKGTMP Trigger: TGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGCTGTGCTCAGTCCTTaGAAAGACAGAACCTTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQAVLSP*KDRTFA Trigger: AGCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGACTTCCATGCAGATCTaGAGCCGCAGACATGGGATA | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQTSMQI*SRRHGI Trigger: TATCCCATGTCTGCGGCTTCAGATCTGCATGGAAGT...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGCCGCTATGACGCTGTaGTCAGTCCTTGAAAAGACA | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQAAMTL*SVLEKT Trigger: TGTCTTTTCAAGGACTGAGCACAGCGTCATAGCGGC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCAGGTTGATAATCACTaGATTGGTGGGTGTCCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQQVDNH*IGGCPQ Trigger: CTGCGGACACCCACCAATGCAGTGATTATCAACCTG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTTTGTTACATCTGCCTaGTCTGCCCAGTCTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQFVTSA*SAQSLW Trigger: CCACAGAGACTGGGCAGACCAGGCAGATGTAACAAA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR TCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTCAGGCACTGCTAGGTaGGGTTGGCATTTAAACATG | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQSGTAR*GWHLNM Trigger: CATGTTTAAATGCCAACCTCACCTAGCAGTGCCTGA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGAATTTCCAACTTCCATaGAGATCTGAAGCCGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQNFQLP*RSEAAD Trigger: GTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATT...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCTGGAACTGACAGCCTaGATGTCCAAATTTCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQLELTA*MSKFPT Trigger: AGTTGGAAATTTGGACATGCAGGCTGTCAGTTCCAG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGGAATAAGGGGACCATaGCAGCAGAAACATCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQGIRGP*QQKHQY Trigger: ATACTGATGTTTCTGCTGGCATGGTCCCCTTATTCC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS-3UTR GCA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGAACGTAGAGGATTTTaGAAACAGTGGAGCTATGAT | + |
|
Preference number: 4 (lower is better) Translates to: SGILIAVSSLMENLVKLQERRGF*KQWSYD Trigger: ATCATAGCTCCACTGTTTGCAAAATCCTCTACGTTC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS GCA 90 bp | CATCTTTGTTACATCTGCCTGGTCTGCCCAGTCTCTGTGGAGGTGTaGAGTGCAGTCACTAGCGGCGTAGAGTCTCAGGGACCGACTGAC | + |
|
Preference number: 5 (lower is better) Translates to: HLCYICLVCPVSVEV*SAVTSGVESQGPTD Trigger: GTCAGTCGGTCCCTGAGACTCTACGCCGCTAGTGACTGCACTGCACACCTCCACAGAGACTGGGCAGACCAGGCAGATGTAACAAAGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000200079.5 |
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| CDS-3UTR CAA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTTTGATAATCACTGCATaGGTGGGTGTCCGCAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SSAHSRCVRATAPVRTCPLIITA*VGVRSS Trigger: GGAGCTGCGGACACCCACCAATGCAGTGATTATCAA...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR CAA 90 bp | TCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTCCTTCCGTGAAAGCCAGGTaGATAATCACTGCATTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: SSAHSRCVRATAPVRTCPSVKAR*IITALV Trigger: CACCAATGCAGTGATTATCAACCTGGCTTTCACGGA...AGGACAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS TCA 90 bp | GAGCTGACAGCCTGCATGTCCAAATTTCCAACTTCCATGCAGATCTaGAGCCGCAGACATGGGATAGCCGATGCTACTGACCCCTATATC | + |
|
Preference number: 5 (lower is better) Translates to: ELTACMSKFPTSMQI*SRRHGIADATDPYI Trigger: GATATAGGGGTCAGTAGCATCGGCTATCCCATGTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATTTGGACATGCAGGCTGTCAGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR CAA 90 bp | TTCCAAAACAAGCCCACAAGCACACGATGGAATAAGGGGACCATGCCAGCAGAACGCTGTGCTCAGTCCTaGAAAAGACAGAACCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: FQNKPTSTRWNKGTMPAERCAQS*KRQNLR Trigger: GCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGCG...TTCTGCTGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGGCTTGTTTTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR CAA 90 bp | AAGCCCACAAGCACACGATGGAATAAGGGGACCATGCCAGCAGAAACATCAGTAGGTGTCCGCAGCTCCTaGTACTTGATGAAGATACCC | + |
|
Preference number: 5 (lower is better) Translates to: KPTSTRWNKGTMPAETSVGVRSS*YLMKIP Trigger: GGGTATCTTCATCAAGTACAAGGAGCTGCGGACACC...TACTGATGTTTCTGCTGGCATGGTCCCCTTATTCCATCGTGTGCTTGTGGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR CAA 90 bp | AGACTCCTCAGCCCACTCCAGGTGTGTCAGAGCTACTGCTCCAGTGAGAACCTGTTATCACAGACATCTTaGTTACATCTGCCTGGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: RLLSPLQVCQSYCSSENLLSQTS*LHLPGL Trigger: CAGACCAGGCAGATGTAACAAAGATGTCTGTGATAA...CAGGTTCTCACTGGAGCAGTAGCTCTGACACACCTGGAGTGGGCTGAGGAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS TCA 90 bp | GAACTGACAGCCTGCATGTCCAAATTTCCAACTTCCATGCAGATCTaGAGCCGCAGACATGGGATAGCCGATGCTACTGACCCCTATATC | + |
|
Preference number: 5 (lower is better) Translates to: ELTACMSKFPTSMQI*SRRHGIADATDPYI Trigger: GATATAGGGGTCAGTAGCATCGGCTATCCCATGTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATTTGGACATGCAGGCTGTCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS TCA 90 bp | GTATACAGGCACCCAGTCACCTGCCTGTCGTTTCTTCCCTGGAACTaGCAGCCTGCATGTCCAAATTTCCAACTTCCATGCAGATCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: VYRHPVTCLSFLPWN*QPACPNFQLPCRSE Trigger: TTCAGATCTGCATGGAAGTTGGAAATTTGGACATGCAGGCTGTCAGTTCCAGGGAAGAAACGACAGGCAGGTGACTGGGTGCCTGTATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS-3UTR CAA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTGCCCAAAACAGGCCATaGATCCAGGCGCCCAGGATC | + |
|
Preference number: 5 (lower is better) Translates to: AQERSFLMKAIVSVQSYVAQNRP*IQAPRI Trigger: GATCCTGGGCGCCTGGATCAATGGCCTGTTTTGGGC...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS TCA 90 bp | AATCTGACAGCCTGCATGTCCAAATTTCCAACTTCCATGCAGATCTaGAGCCGCAGACATGGGATAGCCGATGCTACTGACCCCTATATC | + |
|
Preference number: 5 (lower is better) Translates to: NLTACMSKFPTSMQI*SRRHGIADATDPYI Trigger: GATATAGGGGTCAGTAGCATCGGCTATCCCATGTCTGCGGCTTCAGATCTGCATGGAAGTTGGAAATTTGGACATGCAGGCTGTCAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171313.8 ENSMUST00000196902.5 |
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| CDS GCA 90 bp | GATGCTACTGACCCCTATATCCGTGAAAGCCAGGTTGATAATCACTaGATTGGTGGGTGTCCGCAGCTCCTTGTACTTGATGAAGATACC | + |
|
Preference number: 5 (lower is better) Translates to: DATDPYIRESQVDNH*IGGCPQLLVLDEDT Trigger: GGTATCTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCTGGCTTTCACGGATATAGGGGTCAGTAGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CCA 90 bp | TATCCATCTGTAGAGTCAGCTTTAGGAGATCCACTGCCCTCCTCTTaGCTCCACCAGCATTGCATACATGCGGTACAAGACATGTATACA | + |
|
Preference number: 5 (lower is better) Translates to: YPSVESALGDPLPSS*LHQHCIHAVQDMYT Trigger: TGTATACATGTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCCTAAAGCTGACTCTACAGATGGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS-3UTR CAA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTCGCTGTGCTCAGTCCTaGAAAAGACAGAACCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: AQERSFLMKAIVSVQSYVRCAQS*KRQNLR Trigger: GCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGCG...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
||
| CDS-3UTR CAA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTGGTGTCCGCAGCTCCTaGTACTTGATGAAGATACCC | + |
|
Preference number: 5 (lower is better) Translates to: AQERSFLMKAIVSVQSYVGVRSS*YLMKIP Trigger: GGGTATCTTCATCAAGTACAAGGAGCTGCGGACACC...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
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| CDS-3UTR CAA 90 bp | AATACAGGGGTTGTAGAACGTAGAGGATTTTGCAAACAGTGGAGCTATGATAGCTTGATAATCACTGCATaGGTGGGTGTCCGCAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: NTGVVERRGFCKQWSYDSLIITA*VGVRSS Trigger: GGAGCTGCGGACACCCACCAATGCAGTGATTATCAA...GCTATCATAGCTCCACTGTTTGCAAAATCCTCTACGTTCTACAACCCCTGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
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| CDS-3UTR CAA 90 bp | AGCCACGTAAATACAGGGGTTGTAGAACGTAGAGGATTTTGCAAACAGTGGAGCTCCGTGAAAGCCAGGTaGATAATCACTGCATTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: SHVNTGVVERRGFCKQWSSVKAR*IITALV Trigger: CACCAATGCAGTGATTATCAACCTGGCTTTCACGGA...GCTCCACTGTTTGCAAAATCCTCTACGTTCTACAACCCCTGTATTTACGTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197535.2 |
||
| CDS-3UTR CAA 90 bp | GCCCAAGAGCGTTCCTTTCTAATGAAGGCAATTGTCTCTGTTCAAAGCTATGTTCGCAGCTCCTTGTACTaGATGAAGATACCCAGGACT | + |
|
Preference number: 5 (lower is better) Translates to: AQERSFLMKAIVSVQSYVRSSLY*MKIPRT Trigger: AGTCCTGGGTATCTTCATCAAGTACAAGGAGCTGCG...AACATAGCTTTGAACAGAGACAATTGCCTTCATTAGAAAGGAACGCTCTTGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171313.8 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGCCCAAAACAGGCCATaGATCCAGGCGCCCAGGATC | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQAQNRP*IQAPRI Trigger: GATCCTGGGCGCCTGGATCAATGGCCTGTTTTGGGC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTCCACTGCCCTCCTCTaGGCTCCACCAGCATTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQSTALL*APPALH Trigger: ATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCGCTGTGCTCAGTCCTaGAAAAGACAGAACCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQRCAQS*KRQNLR Trigger: GCGAAGGTTCTGTCTTTTCAAGGACTGAGCACAGCG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGGGTGTCCGCAGCTCCTaGTACTTGATGAAGATACCC | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQGVRSS*YLMKIP Trigger: GGGTATCTTCATCAAGTACAAGGAGCTGCGGACACC...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTTGATAATCACTGCATaGGTGGGTGTCCGCAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQLIITA*VGVRSS Trigger: GGAGCTGCGGACACCCACCAATGCAGTGATTATCAA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGCGCAGCTCCTTGTACTaGATGAAGATACCCAGGACT | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQRSSLY*MKIPRT Trigger: AGTCCTGGGTATCTTCATCAAGTACAAGGAGCTGCG...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTCCGTGAAAGCCAGGTaGATAATCACTGCATTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQSVKAR*IITALV Trigger: CACCAATGCAGTGATTATCAACCTGGCTTTCACGGA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
||
| CDS-3UTR CAA 90 bp | TCTGGTATTCTGATAGCTGTTTCTAGTCTAATGGAAAACTTAGTCAAGTTACAGTTATCACAGACATCTTaGTTACATCTGCCTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SGILIAVSSLMENLVKLQLSQTS*LHLPGL Trigger: CAGACCAGGCAGATGTAACAAAGATGTCTGTGATAA...CTGTAACTTGACTAAGTTTTCCATTAGACTAGAAACAGCTATCAGAATACCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029648.11 ENSMUST00000200079.5 |
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| CDS GCA 72 bp | ACTGCCCTCCTCTTGGCTCCACCAGCATTGCATACATaGGGTACAAGACATGTATACAGGCACCCAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: TALLLAPPALHT*GTRHVYRHPVT Trigger: GGTGACTGGGTGCCTGTATACATGTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS GCA 72 bp | GGAGATCCACTGCCCTCCTCTTGGCTCCACCAGCATTaGATACATGCGGTACAAGACATGTATACAGGCACC | + |
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Preference number: 6 (lower is better) Translates to: GDPLPSSWLHQH*IHAVQDMYTGT Trigger: GGTGCCTGTATACATGTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS CAA 72 bp | CCGATGCTACTGACCCCTATATCCGTGAAAGCCAGGTaGATAATCACTGCATTGGTGGGTGTCCGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PMLLTPISVKAR*IITALVGVRSS Trigger: GGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCTGGCTTTCACGGATATAGGGGTCAGTAGCATCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS TCA 72 bp | CACCCAGTCACCTGCCTGTCGTTTCTTCCCTGGAACTaGCAGCCTGCATGTCCAAATTTCCAACTTCCATGC | + |
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Preference number: 6 (lower is better) Translates to: HPVTCLSFLPWN*QPACPNFQLPC Trigger: GCATGGAAGTTGGAAATTTGGACATGCAGGCTGTCAGTTCCAGGGAAGAAACGACAGGCAGGTGACTGGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS GCA 72 bp | CATGCTGAGGTAAGTGTTGGTGGTCATTCTTCGTCCTaGCACAATCAGGTAAGCCGCTATGACGCTGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: HAEVSVGGHSSS*HNQVSRYDAVL Trigger: GAGCACAGCGTCATAGCGGCTTACCTGATTGTGGCAGGACGAAGAATGACCACCAACACTTACCTCAGCATG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200079.5 |
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| CDS CCA 72 bp | GTAGAGTCAGCTTTAGGAGATCCACTGCCCTCCTCTTaGCTCCACCAGCATTGCATACATGCGGTACAAGAC | + |
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Preference number: 6 (lower is better) Translates to: VESALGDPLPSS*LHQHCIHAVQD Trigger: GTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCCTAAAGCTGACTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS CAA 72 bp | AGGAGATCCACTGCCCTCCTCTTGGCTCCACCAGCATaGCATACATGCGGTACAAGACATGTATACAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: RRSTALLLAPPA*HTCGTRHVYRH Trigger: GTGCCTGTATACATGTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS CAA 72 bp | TGTAGAGTCAGCTTTAGGAGATCCACTGCCCTCCTCTaGGCTCCACCAGCATTGCATACATGCGGTACAAGA | + |
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Preference number: 6 (lower is better) Translates to: CRVSFRRSTALL*APPALHTCGTR Trigger: TCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCCTAAAGCTGACTCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS CAA 90 bp | CTACTGACCCCTATATCCGTGAAAGCCAGGTTGATAATCACTGCATaGGTGGGTGTCCGCAGCTCCTTGTACTTGATGAAGATACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LLTPISVKARLIITA*VGVRSSLYLMKIPR Trigger: CCTGGGTATCTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCTGGCTTTCACGGATATAGGGGTCAGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS GCA 72 bp | GACCCCTATATCCGTGAAAGCCAGGTTGATAATCACTaGATTGGTGGGTGTCCGCAGCTCCTTGTACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: DPYIRESQVDNH*IGGCPQLLVLD Trigger: ATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCTGGCTTTCACGGATATAGGGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CAA 72 bp | ATCACTGCATTGGTGGGTGTCCGCAGCTCCTTGTACTaGATGAAGATACCCAGGACTACTACGTTGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: ITALVGVRSSLY*MKIPRTTTLLR Trigger: TCTCAGCAACGTAGTAGTCCTGGGTATCTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CAA 90 bp | AGGTTGATAATCACTGCATTGGTGGGTGTCCGCAGCTCCTTGTACTaGATGAAGATACCCAGGACTACTACGTTGCTGAGAATGCTCGTG | + |
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Preference number: 6 (lower is better) Translates to: RLIITALVGVRSSLY*MKIPRTTTLLRMLV Trigger: CACGAGCATTCTCAGCAACGTAGTAGTCCTGGGTATCTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CAA 72 bp | CCTATATCCGTGAAAGCCAGGTTGATAATCACTGCATaGGTGGGTGTCCGCAGCTCCTTGTACTTGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: PISVKARLIITA*VGVRSSLYLMK Trigger: CTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAACCTGGCTTTCACGGATATAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CAA 90 bp | ATATCCATCTGTAGAGTCAGCTTTAGGAGATCCACTGCCCTCCTCTaGGCTCCACCAGCATTGCATACATGCGGTACAAGACATGTATAC | + |
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Preference number: 6 (lower is better) Translates to: ISICRVSFRRSTALL*APPALHTCGTRHVY Trigger: GTATACATGTCTTGTACCGCATGTATGCAATGCTGGTGGAGCCAAGAGGAGGGCAGTGGATCTCCTAAAGCTGACTCTACAGATGGATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029648.11 |
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| CDS CAA 72 bp | TCCTTGTACTTGATGAAGATACCCAGGACTACTACGTaGCTGAGAATGCTCGTGATACCTGCCACAATCAGG | + |
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Preference number: 6 (lower is better) Translates to: SLYLMKIPRTTT*LRMLVIPATIR Trigger: CCTGATTGTGGCAGGTATCACGAGCATTCTCAGCAACGTAGTAGTCCTGGGTATCTTCATCAAGTACAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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| CDS CAA 72 bp | TTGATAATCACTGCATTGGTGGGTGTCCGCAGCTCCTaGTACTTGATGAAGATACCCAGGACTACTACGTTG | + |
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Preference number: 6 (lower is better) Translates to: LIITALVGVRSS*YLMKIPRTTTL Trigger: CAACGTAGTAGTCCTGGGTATCTTCATCAAGTACAAGGAGCTGCGGACACCCACCAATGCAGTGATTATCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029648.11 ENSMUST00000171313.8 ENSMUST00000196902.5 ENSMUST00000197535.2 |
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