Pregenerated sensors for RRAS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038387Ensembl transcript IDs: ENSMUST00000044111.10, ENSMUST00000210397.2, ENSMUST00000210895.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGACACAGGGACATCCTCCATCCTTCTTCCTGGGAGCACTAGGTaGGCTAGGAGGGAGTTCTTGTTCCTGGTATTTCCGGACAGCGCG | + |
|
Preference number: 1 (lower is better) Translates to: QDTGTSSILLPGSTR*ARREFLFLVFPDSA Trigger: CGCGCTGTCCGGAAATACCAGGAACAAGAACTCCCTCCTAGCCCACCTAGTGCTCCCAGGAAGAAGGATGGAGGATGTCCCTGTGTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| 3UTR CAA 90 bp | CTGGGGAACCCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTaGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCTTGT | + |
|
Preference number: 2 (lower is better) Translates to: LGNPEDETEAQLERA*VHTVSVRQLVPRAC Trigger: ACAAGCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGGGTTCCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| 3UTR-3UTR CCA 90 bp | ACACAGGGACATCCTCCATCCTTCTTCCTGGGAGCACTAGGTGGGCTAGGAGGGCATTCAGACGCAGTTTaGCTGAGGCCTCAAAGTAAG | + |
|
Preference number: 2 (lower is better) Translates to: TQGHPPSFFLGALGGLGGHSDAV*LRPQSK Trigger: CTTACTTTGAGGCCTCAGCCAAACTGCGTCTGAATG...CCCTCCTAGCCCACCTAGTGCTCCCAGGAAGAAGGATGGAGGATGTCCCTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| 3UTR GCA 72 bp | TCTTGTTCCTGGTATTTCCGGACAGCGCGCACCAGCTaGTCAAATGCCTCATCGACATTCAGACGCAGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: SCSWYFRTARTS*SNASSTFRRSL Trigger: CAAACTGCGTCTGAATGTCGATGAGGCATTTGAGCAGCTGGTGCGCGCTGTCCGGAAATACCAGGAACAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR GCA 90 bp | CGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCTTGTGCTTGGTCAGCGCGCTCTTaGCCACGCCGCCGCCGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: RALVHTVSVRQLVPRACAWSARS*PRRRRL Trigger: TAGGCGGCGGCGGCGTGGGCAAGAGCGCGCTGACCA...AGCACAAGCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR GCA 90 bp | TCCTCCATCCTTCTTCCTGGGAGCACTAGGTGGGCTAGGAGGGAGTTCTTGTTCTGGTCAGCGCGCTCTTaGCCACGCCGCCGCCGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: SSILLPGSTRWARREFLFWSARS*PRRRRL Trigger: TAGGCGGCGGCGGCGTGGGCAAGAGCGCGCTGACCA...GAACAAGAACTCCCTCCTAGCCCACCTAGTGCTCCCAGGAAGAAGGATGGAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR CCA 90 bp | GCGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCTTGTGCCGGAGGACCTGGCGCTaGTTCTCCAGATCTGCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ASLGPHSKCEAAGPESLCRRTWR*FSRSAL Trigger: CAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCG...GCACAAGCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR GCA 90 bp | GCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGCCAGCAGGAAGCCGTTaGCAGCACGCATGTACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: AQLERALVHTVSVRQLVPPAGSR*QHACTA Trigger: AGCAGTACATGCGTGCTGGCAACGGCTTCCTGCTGG...CGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| 3UTR CAA 72 bp | CTTCCTGGGAGCACTAGGTGGGCTAGGAGGGAGTTCTaGTTCCTGGTATTTCCGGACAGCGCGCACCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LPGSTRWARREF*FLVFPDSAHQL Trigger: CAGCTGGTGCGCGCTGTCCGGAAATACCAGGAACAAGAACTCCCTCCTAGCCCACCTAGTGCTCCCAGGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR TCA 90 bp | GCTAGAGCGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCCAAAGTAGGACTGGATaGACTGGATGGTCAGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: ARASLGPHSKCEAAGPESQSRTG*TGWSAR Trigger: GCGCGCTGACCATCCAGTTCATCCAGTCCTACTTTG...GCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR TCA 90 bp | CGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCTTGTGCTTGTGGTGGGAAGCACTaGAAGAGGAGGCTTCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: RALVHTVSVRQLVPRACACGGKH*KRRLQT Trigger: GGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCACA...AGCACAAGCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| 3UTR CAA 72 bp | CCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTaGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: PEDETEAQLERA*VHTVSVRQLVP Trigger: CGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR GCA 90 bp | TGTTCCTGGTATTTCCGGACAGCGCGCACCAGCTGCTCAAATGCCTCATCGACACCAGCAGGAAGCCGTTaGCAGCACGCATGTACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSWYFRTARTSCSNASSTPAGSR*QHACTA Trigger: AGCAGTACATGCGTGCTGGCAACGGCTTCCTGCTGG...TGTCGATGAGGCATTTGAGCAGCTGGTGCGCGCTGTCCGGAAATACCAGGAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR GCA 90 bp | GCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGCTGGTTCTCCAGATCTaGCTTGTTCCCAACCAACAC | + |
|
Preference number: 4 (lower is better) Translates to: AQLERALVHTVSVRQLVPLVLQI*LVPNQH Trigger: GTGTTGGTTGGGAACAAGGCAGATCTGGAGAACCAG...CGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CCA 90 bp | GCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGTCCCAACCAACACAATaGGGAAATCATCCCGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AQLERALVHTVSVRQLVPSQPTQ*GNHPGP Trigger: AGGACCGGGATGATTTCCCCATTGTGTTGGTTGGGA...CGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CCA 90 bp | GGTCTTGTGGGGAAAGGAGGAGGTATTGACAGAAGGCACACAGTGGTAGCCCCACCTGGGAGCACTAGGTaGGCTAGGAGGGAGTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GLVGKGGGIDRRHTVVAPPGSTR*ARREFL Trigger: CAAGAACTCCCTCCTAGCCCACCTAGTGCTCCCAGG...TGGGGCTACCACTGTGTGCCTTCTGTCAATACCTCCTCCTTTCCCCACAAGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR TCA 90 bp | TCTTGTTCCTGGTATTTCCGGACAGCGCGCACCAGCTGCTCAAATGCCTCATCGTGTGGTGGGAAGCACTaGAAGAGGAGGCTTCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: SCSWYFRTARTSCSNASSCGGKH*KRRLQT Trigger: GGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCACA...CGATGAGGCATTTGAGCAGCTGGTGCGCGCTGTCCGGAAATACCAGGAACAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR CCA 90 bp | GGACATCCTCCATCCTTCTTCCTGGGAGCACTAGGTGGGCTAGGAGGGAGTTCTTGTACTGCTCCCGCATaGCACCAAATTCCTCTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: GHPPSFFLGALGGLGGSSCTAPA*HQIPLA Trigger: GGCAAGAGGAATTTGGTGCCATGCGGGAGCAGTACA...AGAACTCCCTCCTAGCCCACCTAGTGCTCCCAGGAAGAAGGATGGAGGATGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR TCA 90 bp | TTCCTGGTATTTCCGGACAGCGCGCACCAGCTGCTCAAATGCCTCATCGACATTCAAAGTAGGACTGGATaGACTGGATGGTCAGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: FLVFPDSAHQLLKCLIDIQSRTG*TGWSAR Trigger: GCGCGCTGACCATCCAGTTCATCCAGTCCTACTTTG...AATGTCGATGAGGCATTTGAGCAGCTGGTGCGCGCTGTCCGGAAATACCAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR CCA 90 bp | CGAGCCTTGGTCCACACAGTAAGTGTGAGGCAGCTGGTCCCGAGAGCTTGTGCTCATTCAGACGCAGTTTaGCTGAGGCCTCAAAGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: RALVHTVSVRQLVPRACAHSDAV*LRPQSK Trigger: CTTACTTTGAGGCCTCAGCCAAACTGCGTCTGAATG...AGCACAAGCTCTCGGGACCAGCTGCCTCACACTTACTGTGTGGACCAAGGCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CCA 90 bp | GAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTGTGTGTACTGCTCCCGCATaGCACCAAATTCCTCTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: EDETEAQLERALVHTVSVCTAPA*HQIPLA Trigger: GGCAAGAGGAATTTGGTGCCATGCGGGAGCAGTACA...CACACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR TCA 90 bp | CCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTCAGACGCAGTTTGGCTaGGGCCTCAAAGTAAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: PEDETEAQLERALVHTVSQTQFG*GLKVSH Trigger: ATGACTTACTTTGAGGCCTCAGCCAAACTGCGTCTG...ACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR GCA 90 bp | CCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAAGTCACCAGCTGCTCAAATaGCTCATCGACATTCAGACG | + |
|
Preference number: 4 (lower is better) Translates to: PEDETEAQLERALVHTVSHQLLK*LIDIQT Trigger: CGTCTGAATGTCGATGAGGCATTTGAGCAGCTGGTG...ACTTACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR GCA 90 bp | AACCCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAACCTCATTGAAACTCTaGCTGTCGTTAATGGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: NPEDETEAQLERALVHTVTSLKL*LSLMAN Trigger: GTTTGCCATTAACGACAGGCAGAGTTTCAATGAGGT...TACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS GCA 90 bp | GTGGTGGGAAGCACTGAAAGAGGAGGCTTCAGACCGGAGGACCTCTaGCTGTCGTTAATGGCAAACACCAGCAGGAAGCCGTTGCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: VVGSTERGGFRPEDL*LSLMANTSRKPLPA Trigger: TGCTGGCAACGGCTTCCTGCTGGTGTTTGCCATTAACGACAGGCAGAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS-3UTR CAA 90 bp | GGTCTTGTGGGGAAAGGAGGAGGTATTGACAGAAGGCACACAGTGGTAGCCCCAACCAGCAGGAAGCCGTaGCCAGCACGCATGTACTGC | + |
|
Preference number: 5 (lower is better) Translates to: GLVGKGGGIDRRHTVVAPTSRKP*PARMYC Trigger: GCAGTACATGCGTGCTGGCAACGGCTTCCTGCTGGT...TGGGGCTACCACTGTGTGCCTTCTGTCAATACCTCCTCCTTTCCCCACAAGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CAA 90 bp | TGTTCCTGGTATTTCCGGACAGCGCGCACCAGCTGCTCAAATGCCTCATCGACAACCAGCAGGAAGCCGTaGCCAGCACGCATGTACTGC | + |
|
Preference number: 5 (lower is better) Translates to: CSWYFRTARTSCSNASSTTSRKP*PARMYC Trigger: GCAGTACATGCGTGCTGGCAACGGCTTCCTGCTGGT...TGTCGATGAGGCATTTGAGCAGCTGGTGCGCGCTGTCCGGAAATACCAGGAACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS TCA 90 bp | GCAGTTTGGCTGAGGCCTCAAAGTAAGTCATGTGGTGGGAAGCACTaGAAGAGGAGGCTTCAGACCGGAGGACCTGGCGCTGGTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: AVWLRPQSKSCGGKH*KRRLQTGGPGAGSP Trigger: TGGAGAACCAGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCACATGACTTACTTTGAGGCCTCAGCCAAACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS GCA 90 bp | ATTCCTCTTGCCCCGCAGTGTCCAGGATGTCCAGCCGTGCAGGGATaGCGTCCACAGTGCAGATCTTTGTGTAGGAATCTTCAATGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: IPLAPQCPGCPAVQG*RPQCRSLCRNLQWW Trigger: CCACCATTGAAGATTCCTACACAAAGATCTGCACTGTGGACGGCATCCCTGCACGGCTGGACATCCTGGACACTGCGGGGCAAGAGGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044111.10 ENSMUST00000210397.2 ENSMUST00000210895.2 |
||
| CDS CCA 90 bp | TGGGAAGCACTGAAAGAGGAGGCTTCAGACCGGAGGACCTGGCGCTaGTTCTCCAGATCTGCCTTGTTCCCAACCAACACAATGGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: WEALKEEASDRRTWR*FSRSALFPTNTMGK Trigger: TTTCCCCATTGTGTTGGTTGGGAACAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS CCA 90 bp | ATGTGGTGGGAAGCACTGAAAGAGGAGGCTTCAGACCGGAGGACCTaGCGCTGGTTCTCCAGATCTGCCTTGTTCCCAACCAACACAATG | + |
|
Preference number: 5 (lower is better) Translates to: MWWEALKEEASDRRT*RWFSRSALFPTNTM Trigger: CATTGTGTTGGTTGGGAACAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CAA 90 bp | GGTCTTGTGGGGAAAGGAGGAGGTATTGACAGAAGGCACACAGTGGTAGCCCCAAGCTTGCCCACCTCATaGAAACTCTGCCTGTCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: GLVGKGGGIDRRHTVVAPSLPTS*KLCLSL Trigger: TAACGACAGGCAGAGTTTCAATGAGGTGGGCAAGCT...TGGGGCTACCACTGTGTGCCTTCTGTCAATACCTCCTCCTTTCCCCACAAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CAA 90 bp | AACCCAGAGGATGAAACAGAGGCTCAGCTAGAGCGAGCCTTGGTCCACACAGTAGCTAGGAGGGAGTTCTaGTTCCTGGTATTTCCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: NPEDETEAQLERALVHTVARREF*FLVFPD Trigger: GTCCGGAAATACCAGGAACAAGAACTCCCTCCTAGC...TACTGTGTGGACCAAGGCTCGCTCTAGCTGAGCCTCTGTTTCATCCTCTGGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS-3UTR CAA 90 bp | GGTCTTGTGGGGAAAGGAGGAGGTATTGACAGAAGGCACACAGTGGTAGCCCCATTCTCCAGATCTGCCTaGTTCCCAACCAACACAATG | + |
|
Preference number: 5 (lower is better) Translates to: GLVGKGGGIDRRHTVVAPFSRSA*FPTNTM Trigger: CATTGTGTTGGTTGGGAACAAGGCAGATCTGGAGAA...TGGGGCTACCACTGTGTGCCTTCTGTCAATACCTCCTCCTTTCCCCACAAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS TCA 90 bp | CACCAGCTGCTCAAATGCCTCATCGACATTCAGACGCAGTTTGGCTaGGGCCTCAAAGTAAGTCATGTGGTGGGAAGCACTGAAAGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: HQLLKCLIDIQTQFG*GLKVSHVVGSTERG Trigger: TCCTCTTTCAGTGCTTCCCACCACATGACTTACTTTGAGGCCTCAGCCAAACTGCGTCTGAATGTCGATGAGGCATTTGAGCAGCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS GCA 72 bp | GCCCCGCAGTGTCCAGGATGTCCAGCCGTGCAGGGATaGCGTCCACAGTGCAGATCTTTGTGTAGGAATCTT | + |
|
Preference number: 6 (lower is better) Translates to: APQCPGCPAVQG*RPQCRSLCRNL Trigger: AAGATTCCTACACAAAGATCTGCACTGTGGACGGCATCCCTGCACGGCTGGACATCCTGGACACTGCGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044111.10 ENSMUST00000210397.2 ENSMUST00000210895.2 |
||
| CDS GCA 72 bp | TTCCTCTTGCCCCGCAGTGTCCAGGATGTCCAGCCGTaGAGGGATGCCGTCCACAGTGCAGATCTTTGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: FLLPRSVQDVQP*RDAVHSADLCV Trigger: TACACAAAGATCTGCACTGTGGACGGCATCCCTGCACGGCTGGACATCCTGGACACTGCGGGGCAAGAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044111.10 ENSMUST00000210397.2 ENSMUST00000210895.2 |
||
| CDS CCA 72 bp | GAAGCACTGAAAGAGGAGGCTTCAGACCGGAGGACCTaGCGCTGGTTCTCCAGATCTGCCTTGTTCCCAACC | + |
|
Preference number: 6 (lower is better) Translates to: EALKEEASDRRT*RWFSRSALFPT Trigger: GGTTGGGAACAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS CAA 72 bp | GACCGGAGGACCTGGCGCTGGTTCTCCAGATCTGCCTaGTTCCCAACCAACACAATGGGGAAATCATCCCGG | + |
|
Preference number: 6 (lower is better) Translates to: DRRTWRWFSRSA*FPTNTMGKSSR Trigger: CCGGGATGATTTCCCCATTGTGTTGGTTGGGAACAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS TCA 72 bp | CTGAGGCCTCAAAGTAAGTCATGTGGTGGGAAGCACTaGAAGAGGAGGCTTCAGACCGGAGGACCTGGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: LRPQSKSCGGKH*KRRLQTGGPGA Trigger: AGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCTTCCCACCACATGACTTACTTTGAGGCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS GCA 72 bp | AGCACTGAAAGAGGAGGCTTCAGACCGGAGGACCTCTaGCTGTCGTTAATGGCAAACACCAGCAGGAAGCCG | + |
|
Preference number: 6 (lower is better) Translates to: STERGGFRPEDL*LSLMANTSRKP Trigger: CGGCTTCCTGCTGGTGTTTGCCATTAACGACAGGCAGAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAGTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210397.2 |
||
| CDS CCA 72 bp | CTGAAAGAGGAGGCTTCAGACCGGAGGACCTGGCGCTaGTTCTCCAGATCTGCCTTGTTCCCAACCAACACA | + |
|
Preference number: 6 (lower is better) Translates to: LKEEASDRRTWR*FSRSALFPTNT Trigger: TGTGTTGGTTGGGAACAAGGCAGATCTGGAGAACCAGCGCCAGGTCCTCCGGTCTGAAGCCTCCTCTTTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS GCA 72 bp | CCAGGATGTCCAGCCGTGCAGGGATGCCGTCCACAGTaGAGATCTTTGTGTAGGAATCTTCAATGGTGGGAT | + |
|
Preference number: 6 (lower is better) Translates to: PGCPAVQGCRPQ*RSLCRNLQWWD Trigger: ATCCCACCATTGAAGATTCCTACACAAAGATCTGCACTGTGGACGGCATCCCTGCACGGCTGGACATCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044111.10 ENSMUST00000210397.2 ENSMUST00000210895.2 |
||
| CDS CAA 72 bp | TTCCCAACCAACACAATGGGGAAATCATCCCGGTCCTaGACTCTGAGGATCTGTGTGAAGAGCTTGCCCACC | + |
|
Preference number: 6 (lower is better) Translates to: FPTNTMGKSSRS*TLRICVKSLPT Trigger: GGTGGGCAAGCTCTTCACACAGATCCTCAGAGTCAAGGACCGGGATGATTTCCCCATTGTGTTGGTTGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS CAA 72 bp | TCCCGGTCCTTGACTCTGAGGATCTGTGTGAAGAGCTaGCCCACCTCATTGAAACTCTGCCTGTCGTTAATG | + |
|
Preference number: 6 (lower is better) Translates to: SRSLTLRICVKS*PTSLKLCLSLM Trigger: CATTAACGACAGGCAGAGTTTCAATGAGGTGGGCAAGCTCTTCACACAGATCCTCAGAGTCAAGGACCGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS CAA 90 bp | TCTGCCTTGTTCCCAACCAACACAATGGGGAAATCATCCCGGTCCTaGACTCTGAGGATCTGTGTGAAGAGCTTGCCCACCTCATTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SALFPTNTMGKSSRS*TLRICVKSLPTSLK Trigger: TTTCAATGAGGTGGGCAAGCTCTTCACACAGATCCTCAGAGTCAAGGACCGGGATGATTTCCCCATTGTGTTGGTTGGGAACAAGGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||
| CDS TCA 72 bp | CTCAAATGCCTCATCGACATTCAGACGCAGTTTGGCTaGGGCCTCAAAGTAAGTCATGTGGTGGGAAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: LKCLIDIQTQFG*GLKVSHVVGST Trigger: AGTGCTTCCCACCACATGACTTACTTTGAGGCCTCAGCCAAACTGCGTCTGAATGTCGATGAGGCATTTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044111.10 |
||