Pregenerated sensors for RRAGC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028646Ensembl transcript IDs: ENSMUST00000030399.7, ENSMUST00000155757.8
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCTGAGACTCAGACTAGATGGCATTCCGAGGCGTGCCGTTATGTaGCAAGGCTTTCAGACTTGGAGCACTGGTCTGATGACTGCAGCT | + |
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Preference number: 1 (lower is better) Translates to: LLRLRLDGIPRRAVM*QGFQTWSTGLMTAA Trigger: AGCTGCAGTCATCAGACCAGTGCTCCAAGTCTGAAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAGTCTCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR GCA 90 bp | GGTCTCTGCAATTCTTTTGCGATGTACTTAGAGAGTAGCTTCAGTTaGACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAACTCCAC | + |
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Preference number: 1 (lower is better) Translates to: GLCNSFAMYLESSFS*TQPAEGLSSAEKLH Trigger: GTGGAGTTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCTACTCTCTAAGTACATCGCAAAAGAATTGCAGAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR GCA 90 bp | ATCCAGAGATCTGATGCTGCCCTTGCTGAGCCTGGCTCTCCCCGATaGCGCACAAAAACTTCCTCTTCTCTTCAGAAACATCCTTCGCTT | + |
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Preference number: 1 (lower is better) Translates to: IQRSDAALAEPGSPR*RTKTSSSLQKHPSL Trigger: AAGCGAAGGATGTTTCTGAAGAGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGCATCAGATCTCTGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR TCA 90 bp | GTGCATGGTCATGATCAGGCGAGGAGAGCACGGCCCTCTGCTACCTaGACCACAGCTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCA | + |
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Preference number: 1 (lower is better) Translates to: VHGHDQARRARPSAT*TTAVENHFCFKVFP Trigger: TGGAAAAACTTTGAAACAGAAGTGATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCGTGCTCTCCTCGCCTGATCATGACCATGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR CCA 90 bp | ATCAGGCGAGGAGAGCACGGCCCTCTGCTACCTGAACCACAGCTGTaGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: IRRGEHGPLLPEPQL*KITSVSKFFQHIQR Trigger: TCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCGTGCTCTCCTCGCCTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR CCA 90 bp | TATGAATTCATATCTCAGGCAAAGCAAAGTAGCACAGCTGACACTTaGTGTCAGACAACCGACCGCAGAGTGTGTGAAGTTGCACACGCT | + |
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Preference number: 1 (lower is better) Translates to: YEFISQAKQSSTADT*CQTTDRRVCEVAHA Trigger: AGCGTGTGCAACTTCACACACTCTGCGGTCGGTTGTCTGACACCAAGTGTCAGCTGTGCTACTTTGCTTTGCCTGAGATATGAATTCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR CCA 90 bp | AAGTCCATTATAATGGACTCATTTCTCATGTTCTCCCTGACGGTGTaGCCATCGATGGATACTTCAGTGGGTGAGGTGACCACTGTAATA | + |
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Preference number: 1 (lower is better) Translates to: KSIIMDSFLMFSLTV*PSMDTSVGEVTTVI Trigger: TATTACAGTGGTCACCTCACCCACTGAAGTATCCATCGATGGCCACACCGTCAGGGAGAACATGAGAAATGAGTCCATTATAATGGACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR TCA 90 bp | CAAAAACTTCCTCTTCTCTTCAGAAACATCCTTCGCTTGGTCTTCTaGATCAGCAAGGTAATGCACTTCCAAGGTCTTAGAGGTACAGTG | + |
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Preference number: 1 (lower is better) Translates to: QKLPLLFRNILRLVF*ISKVMHFQGLRGTV Trigger: CACTGTACCTCTAAGACCTTGGAAGTGCATTACCTTGCTGATTCAGAAGACCAAGCGAAGGATGTTTCTGAAGAGAAGAGGAAGTTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR TCA 90 bp | AGGGAAGCATATAAAACTCAGTTTCCTACTGTTTTAGGCTGGGACTaGCAGCAACATTCACTGGTAAAGATGGCTAACTGGTTATCATCT | + |
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Preference number: 1 (lower is better) Translates to: REAYKTQFPTVLGWD*QQHSLVKMANWLSS Trigger: AGATGATAACCAGTTAGCCATCTTTACCAGTGAATGTTGCTGTCAGTCCCAGCCTAAAACAGTAGGAAACTGAGTTTTATATGCTTCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAGCACTGAGCCTCCGCTGCTGAGACTCAGACTAGATGGCATTCCGAGGCGTAGTTTGTCCCTTCACTaGGGGGACTGTGGGGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: ASTEPPLLRLRLDGIPRRSLSLH*GDCGEV Trigger: GACTTCCCCACAGTCCCCCCAGTGAAGGGACAAACT...ACGCCTCGGAATGCCATCTAGTCTGAGTCTCAGCAGCGGAGGCTCAGTGCTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAACTCCACCAGCTCCTAAACACCTaGGAGTCTGGAGTCAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: SFSCTQPAEGLSSAEKLHQLLNT*ESGVRC Trigger: GCACCTGACTCCAGACTCTCAGGTGTTTAGGAGCTG...GTGGAGTTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | GCCAGCACTGAGCCTCCGCTGCTGAGACTCAGACTAGATGGCATTCCGAGGCGTAGACACACTGAGTTCTaGGGTCTCTGCAATTCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: ASTEPPLLRLRLDGIPRRRHTEF*GLCNSF Trigger: AAAAGAATTGCAGAGACCTCAGAACTCAGTGTGTCT...ACGCCTCGGAATGCCATCTAGTCTGAGTCTCAGCAGCGGAGGCTCAGTGCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAACTCCACGTCTTAGAGGTACAGTaGGATCTGAACTCTGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: SFSCTQPAEGLSSAEKLHVLEVQ*DLNSER Trigger: CCTTTCAGAGTTCAGATCTCACTGTACCTCTAAGAC...GTGGAGTTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCCTTGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAACTTCCTCTTCTGTCTTAGAGGTACAGTaGGATCTGAACTCTGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: AALAEPGSPRCRTKTSSSVLEVQ*DLNSER Trigger: CCTTTCAGAGTTCAGATCTCACTGTACCTCTAAGAC...AGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCCTTGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAACTTCCTCTTCTAGACACACTGAGTTCTaGGGTCTCTGCAATTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: AALAEPGSPRCRTKTSSSRHTEF*GLCNSF Trigger: AAAAGAATTGCAGAGACCTCAGAACTCAGTGTGTCT...AGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCCTTGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAACTTCCTCTTCTGTAAAGATGGCTAACTaGTTATCATCTCCAGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: AALAEPGSPRCRTKTSSSVKMAN*LSSPGP Trigger: TGGACCTGGAGATGATAACCAGTTAGCCATCTTTAC...AGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAGGGGCCCAGTGGCTTTaGAATGTGACTACTGGGCAT | + |
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Preference number: 2 (lower is better) Translates to: HRGPCKFATVSHLQEVLQGAQWL*NVTTGH Trigger: ATGCCCAGTAGTCACATTCCAAAGCCACTGGGCCCC...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | CATTATAATGGACTCATTTCTCATGTTCTCCCTGACGGTGTGGCCATCGATGGAGCAGCGCTCATGTCCTaGAGTGCATGGCATCTGACC | + |
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Preference number: 2 (lower is better) Translates to: HYNGLISHVLPDGVAIDGAALMS*SAWHLT Trigger: GGTCAGATGCCATGCACTGCAGGACATGAGCGCTGC...TCCATCGATGGCCACACCGTCAGGGAGAACATGAGAAATGAGTCCATTATAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAATTTCACTCACCAGCTaGACTGACGCACTCAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: HRGPCKFATVSHLQEVLQISLTS*TDALKG Trigger: CCCCTTGAGTGCGTCAGTGCAGCTGGTGAGTGAAAT...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTGAGACTCAGACTAGATGGCATTCCGAGGCGTGCCGTTATGTGCCAAGGCTTTGAAGAAAAGACACACTaGGTTCTGAGGTCTCTGCAA | + |
|
Preference number: 2 (lower is better) Translates to: LRLRLDGIPRRAVMCQGFEEKTH*VLRSLQ Trigger: TTGCAGAGACCTCAGAACTCAGTGTGTCTTTTCTTC...AAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAGTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATCGGCCCTCTGCTACCTaGACCACAGCTGTGGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: AGALRVICGQKQFVKSLHRPSAT*TTAVEN Trigger: ATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCG...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATAGTTTGTCCCTTCACTaGGGGGACTGTGGGGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: AGALRVICGQKQFVKSLHSLSLH*GDCGEV Trigger: GACTTCCCCACAGTCCCCCCAGTGAAGGGACAAACT...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAGCTAGGTTACAGACCTaGGTACATTTCACTCACCAG | + |
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Preference number: 2 (lower is better) Translates to: HRGPCKFATVSHLQEVLQARLQT*VHFTHQ Trigger: CTGGTGAGTGAAATGTACTCAGGTCTGTAACCTAGC...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | AGGGCTCAAGAGAGAAGAAAAGACACACTGAGTTCTGAGGTCTCTGCAATTCTTGCTCATGTCCTGCAGTaGATGGCATCTGACCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: RAQERRKDTLSSEVSAILAHVLQ*MASDPG Trigger: TCCAGGGTCAGATGCCATGCACTGCAGGACATGAGC...AAGAATTGCAGAGACCTCAGAACTCAGTGTGTCTTTTCTTCTCTCTTGAGCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAAGGTACAGTGAGATCTaGACTCTGAAAGGCAGTGTT | + |
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Preference number: 2 (lower is better) Translates to: HRGPCKFATVSHLQEVLQRYSEI*TLKGSV Trigger: AACACTGCCTTTCAGAGTTCAGATCTCACTGTACCT...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTCATGGATAGCTTTTCGGAAACAGTGGAAGTTGTAGTCTATCAACCCTTTTCGCGGCCCTCTGCTACCTaGACCACAGCTGTGGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: LMDSFSETVEVVVYQPFSRPSAT*TTAVEN Trigger: ATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCG...CGAAAAGGGTTGATAGACTACAACTTCCACTGTTTCCGAAAAGCTATCCATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATGCTCATGTCCTGCAGTaGATGGCATCTGACCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHAHVLQ*MASDPG Trigger: TCCAGGGTCAGATGCCATGCACTGCAGGACATGAGC...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATGCTGCCCTTGCTGAGCTCAGACTTGGAGCACTaGTCTGATGACTGCAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LFQSFSNTSRDLMLPLLSSDLEH*SDDCSF Trigger: GAAGCTGCAGTCATCAGACCAGTGCTCCAAGTCTGA...GCTCAGCAAGGGCAGCATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATGCTGCCCTTGCTGAGCGTGAGATCTGAACTCTaGAAGGCAGTGTTAGAACGT | + |
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Preference number: 2 (lower is better) Translates to: LFQSFSNTSRDLMLPLLSVRSEL*KAVLER Trigger: ACGTTCTAACACTGCCTTTCAGAGTTCAGATCTCAC...GCTCAGCAAGGGCAGCATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATGCAGCGCTCATGTCCTaGAGTGCATGGCATCTGACC | + |
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Preference number: 2 (lower is better) Translates to: LWKITSVSKFFQHIQRSDAALMS*SAWHLT Trigger: GGTCAGATGCCATGCACTGCAGGACATGAGCGCTGC...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATACTCAAGGGGCCCAGTaGCTTTGGAATGTGACTACT | + |
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Preference number: 2 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHTQGAQ*LWNVTT Trigger: AGTAGTCACATTCCAAAGCCACTGGGCCCCTTGAGT...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTCATGGATAGCTTTTCGGAAACAGTGGAAGTTGTAGTCTATCAACCCTTTTCGGGATACTTCAGTGGGTaGGGTGACCACTGTAATAGT | + |
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Preference number: 2 (lower is better) Translates to: LMDSFSETVEVVVYQPFSGYFSG*GDHCNS Trigger: ACTATTACAGTGGTCACCTCACCCACTGAAGTATCC...CGAAAAGGGTTGATAGACTACAACTTCCACTGTTTCCGAAAAGCTATCCATGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATCCTGAACCACAGCTGTaGAAAATCACTTCTGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: AGALRVICGQKQFVKSLHPEPQL*KITSVS Trigger: TGAAACAGAAGTGATTTTCCACAGCTGTGGTTCAGG...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATAGGGGAGCTGTCTGTTaGAATGTAGATTTTGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHRGAVC*NVDFAD Trigger: GTCAGCAAAATCTACATTGCAACAGACAGCTCCCCT...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATGAGATTAAAGAAAAGTaGGCTAAGTACTTCAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: AGALRVICGQKQFVKSLHEIKEK*AKYFSD Trigger: GTCACTGAAGTACTTAGCTCACTTTTCTTTAATCTC...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATCTTCGCTTGGTCTTCTaGATCAGCAAGGTAATGCAC | + |
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Preference number: 2 (lower is better) Translates to: LWKITSVSKFFQHIQRSDLRLVF*ISKVMH Trigger: GTGCATTACCTTGCTGATTCAGAAGACCAAGCGAAG...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATTGGGCAGTTGTGGAATaGGTTTCTGTACCACCTTAC | + |
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Preference number: 2 (lower is better) Translates to: LWKITSVSKFFQHIQRSDWAVVE*VSVPPY Trigger: GTAAGGTGGTACAGAAACTCATTCCACAACTGCCCA...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR TCA 72 bp | TGGCATCTGACCCTGGAGGGAGGACTAAGCCAGCACTaGGCCTCCGCTGCTGAGACTCAGACTAGATGGCAT | + |
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Preference number: 3 (lower is better) Translates to: WHLTLEGGLSQH*ASAAETQTRWH Trigger: ATGCCATCTAGTCTGAGTCTCAGCAGCGGAGGCTCAGTGCTGGCTTAGTCCTCCCTCCAGGGTCAGATGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR GCA 72 bp | GCTGCTGAGACTCAGACTAGATGGCATTCCGAGGCGTaGCGTTATGTGCCAAGGCTTTCAGACTTGGAGCAC | + |
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Preference number: 3 (lower is better) Translates to: AAETQTRWHSEA*RYVPRLSDLEH Trigger: GTGCTCCAAGTCTGAAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAGTCTCAGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR CAA 90 bp | GCTGCCCTTGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAACTTCCTCTTCTGTCATCATTGGCCCTTaGATGAATGTCCCTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: AALAEPGSPRCRTKTSSSVIIGP*MNVPLC Trigger: ACACAGAGGGACATTCATCAAAGGGCCAATGATGAC...AGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR GCA 72 bp | CTAGGTTACAGACCTGAGTACATTTCACTCACCAGCTaGACTGACGCACTCAAGGGGCCCAGTGGCTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: LGYRPEYISLTS*TDALKGPSGFG Trigger: TCCAAAGCCACTGGGCCCCTTGAGTGCGTCAGTGCAGCTGGTGAGTGAAATGTACTCAGGTCTGTAACCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR GCA 72 bp | CTCAGACTAGATGGCATTCCGAGGCGTGCCGTTATGTaGCAAGGCTTTCAGACTTGGAGCACTGGTCTGATG | + |
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Preference number: 3 (lower is better) Translates to: LRLDGIPRRAVM*QGFQTWSTGLM Trigger: CATCAGACCAGTGCTCCAAGTCTGAAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR-3UTR CAA 90 bp | GCCAGCACTGAGCCTCCGCTGCTGAGACTCAGACTAGATGGCATTCCGAGGCGTTGTCTTAAATTCCCTTaGTTGCATTGTGCATGGTCA | + |
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Preference number: 3 (lower is better) Translates to: ASTEPPLLRLRLDGIPRRCLKFP*LHCAWS Trigger: TGACCATGCACAATGCAACAAAGGGAATTTAAGACA...ACGCCTCGGAATGCCATCTAGTCTGAGTCTCAGCAGCGGAGGCTCAGTGCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| 3UTR TCA 72 bp | CATGATCAGGCGAGGAGAGCACGGCCCTCTGCTACCTaGACCACAGCTGTGGAAAATCACTTCTGTTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: HDQARRARPSAT*TTAVENHFCFK Trigger: TTTGAAACAGAAGTGATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCGTGCTCTCCTCGCCTGATCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR TCA 72 bp | TGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATaGTCAGGCGAGGAGAGCACGGCCCTCTGCTACCTG | + |
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Preference number: 3 (lower is better) Translates to: CLKFPLLHCAWS*SGEESTALCYL Trigger: CAGGTAGCAGAGGGCCGTGCTCTCCTCGCCTGATCATGACCATGCACAATGCAACAAAGGGAATTTAAGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| 3UTR CCA 72 bp | ATAATGGACTCATTTCTCATGTTCTCCCTGACGGTGTaGCCATCGATGGATACTTCAGTGGGTGAGGTGACC | + |
|
Preference number: 3 (lower is better) Translates to: IMDSFLMFSLTV*PSMDTSVGEVT Trigger: GGTCACCTCACCCACTGAAGTATCCATCGATGGCCACACCGTCAGGGAGAACATGAGAAATGAGTCCATTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| 3UTR CCA 72 bp | GGAGAGCACGGCCCTCTGCTACCTGAACCACAGCTGTaGAAAATCACTTCTGTTTCAAAGTTTTTCCAACAC | + |
|
Preference number: 3 (lower is better) Translates to: GEHGPLLPEPQL*KITSVSKFFQH Trigger: GTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAGCTGTGGTTCAGGTAGCAGAGGGCCGTGCTCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR-3UTR CAA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAATTCCAAAGTGGGCAGTaGTGGAATGAGTTTCTGTAC | + |
|
Preference number: 3 (lower is better) Translates to: HRGPCKFATVSHLQEVLQFQSGQ*WNEFLY Trigger: GTACAGAAACTCATTCCACAACTGCCCACTTTGGAA...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| 3UTR GCA 72 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTaGATTGTGCATGGTCATGATCAGGCGAGGAGAGCA | + |
|
Preference number: 3 (lower is better) Translates to: LWGSLSVLNSLC*IVHGHDQARRA Trigger: TGCTCTCCTCGCCTGATCATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR TCA 72 bp | TATAAAACTCAGTTTCCTACTGTTTTAGGCTGGGACTaGCAGCAACATTCACTGGTAAAGATGGCTAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: YKTQFPTVLGWD*QQHSLVKMANW Trigger: CCAGTTAGCCATCTTTACCAGTGAATGTTGCTGTCAGTCCCAGCCTAAAACAGTAGGAAACTGAGTTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR TCA 72 bp | AACGTAAGCAAAGCAAGTCTTTCGACACTACTCAAGTaGAGGCCTAGGGAAGCATATAAAACTCAGTTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: NVSKASLSTLLK*RPREAYKTQFP Trigger: AGGAAACTGAGTTTTATATGCTTCCCTAGGCCTTCACTTGAGTAGTGTCGAAAGACTTGCTTTGCTTACGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATAAAAGCATTTTTCCTTaGGATATCACCGTGGTCCAT | + |
|
Preference number: 3 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHKSIFP*DITVVH Trigger: ATGGACCACGGTGATATCCAAAGGAAAAATGCTTTT...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR-3UTR CAA 90 bp | GTTATCATCTCCAGGTCCAAAATATCCCAGCTATTTAAAGTAGGGCTCAAGAGATGTCTTAAATTCCCTTaGTTGCATTGTGCATGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: VIISRSKISQLFKVGLKRCLKFP*LHCAWS Trigger: TGACCATGCACAATGCAACAAAGGGAATTTAAGACA...TCTCTTGAGCCCTACTTTAAATAGCTGGGATATTTTGGACCTGGAGATGATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR TCA 72 bp | TGTGAAAGCCTAAATCAGTGGGAAGGGTATCAGCCATaGACAACAGGGAACAATTATGAATTCATATCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: CESLNQWEGYQP*TTGNNYEFISQ Trigger: CTGAGATATGAATTCATAATTGTTCCCTGTTGTTCATGGCTGATACCCTTCCCACTGATTTAGGCTTTCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | ATGTACTTAGAGAGTAGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGGATCCTCGGCTTaGAGCTGTCAGCGCCGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: MYLESSFSCTQPAEGLSSAGSSA*SCQRRP Trigger: CGGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGC...TGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCTACTCTCTAAGTACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | CTGAGACTCAGACTAGATGGCATTCCGAGGCGTGCCGTTATGTGCCAAGGCTTTGCAGGATCCTCGGCTTaGAGCTGTCAGCGCCGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: LRLRLDGIPRRAVMCQGFAGSSA*SCQRRP Trigger: CGGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGC...AAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAGTCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | AGGGCTCAAGAGAGAAGAAAAGACACACTGAGTTCTGAGGTCTCTGCAATTCTTCGGCTGCGCCGTAACTaGCGGCCAGGGGCGTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RAQERRKDTLSSEVSAILRLRRN*RPGASP Trigger: AGGAGACGCCCCTGGCCGGCAGTTACGGCGCAGCCG...AAGAATTGCAGAGACCTCAGAACTCAGTGTGTCTTTTCTTCTCTCTTGAGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | TCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATGATCAGGCGAGGAGACGGCTGCGCCGTAACTaGCGGCCAGGGGCGTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SVLNSLCCIVHGHDQARRRLRRN*RPGASP Trigger: AGGAGACGCCCCTGGCCGGCAGTTACGGCGCAGCCG...TCTCCTCGCCTGATCATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATGGGGAACGAGTCGGCTaGGCCGTAACTGCCGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: AGALRVICGQKQFVKSLHGERVG*AVTAGQ Trigger: CTGGCCGGCAGTTACGGCGCAGCCGACTCGTTCCCC...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR CAA 72 bp | TCCGAGGCGTGCCGTTATGTGCCAAGGCTTTCAGACTaGGAGCACTGGTCTGATGACTGCAGCTTCTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: SEACRYVPRLSD*EHWSDDCSFCE Trigger: CTCACAGAAGCTGCAGTCATCAGACCAGTGCTCCAAGTCTGAAAGCCTTGGCACATAACGGCACGCCTCGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATTCTGGATGGAGGATTTaGCGCTGCGCCGGAGCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: AGALRVICGQKQFVKSLHSGWRI*RCAGAP Trigger: TGGGGCTCCGGCGCAGCGGCAAATCCTCCATCCAGA...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR CAA 72 bp | AGTTTTTCCAACACATCCAGAGATCTGATGCTGCCCTaGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SFSNTSRDLMLP*LSLALPDAAQK Trigger: TTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGCATCAGATCTCTGGATGTGTTGGAAAAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| 3UTR CAA 72 bp | CCAGCTGCACTGACGCACTCAAGGGGCCCAGTGGCTTaGGAATGTGACTACTGGGCATGTGTAGTAAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: PAALTHSRGPVA*ECDYWACVVKK Trigger: TTTCTTTACTACACATGCCCAGTAGTCACATTCCAAAGCCACTGGGCCCCTTGAGTGCGTCAGTGCAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR TCA 90 bp | GAGAGTAGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAAGAGAGTCTCATTGGGTaGCATCTTATGAAACACCAC | + |
|
Preference number: 4 (lower is better) Translates to: ESSFSCTQPAEGLSSAEKESLIG*HLMKHH Trigger: GTGGTGTTTCATAAGATGTCACCCAATGAGACTCTC...TTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCTACTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | AGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAACTCCACACCTCAAACACCTCATaGATAGCTTTTCGGAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: SFSCTQPAEGLSSAEKLHTSNTS*IAFRKQ Trigger: CTGTTTCCGAAAAGCTATCCATGAGGTGTTTGAGGT...GTGGAGTTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR GCA 90 bp | AATTATGAATTCATATCTCAGGCAAAGCAAAGTAGCACAGCTGACACTTGGTGTGGGGAACGAGTCGGCTaGGCCGTAACTGCCGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: NYEFISQAKQSSTADTWCGERVG*AVTAGQ Trigger: CTGGCCGGCAGTTACGGCGCAGCCGACTCGTTCCCC...ACACCAAGTGTCAGCTGTGCTACTTTGCTTTGCCTGAGATATGAATTCATAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | CTGAGACTCAGACTAGATGGCATTCCGAGGCGTGCCGTTATGTGCCAAGGCTTTTTTTCTCTGCCTTTTTaGCACCAGAGAGGTGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: LRLRLDGIPRRAVMCQGFFSLPF*HQRGAH Trigger: GTGTGCACCTCTCTGGTGGCAAAAAGGCAGAGAAAA...AAAGCCTTGGCACATAACGGCACGCCTCGGAATGCCATCTAGTCTGAGTCTCAG 51% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | CTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATGCTGCCCTTGCTGAGCACACCACCTTCTGGATaGAGGATTTGCCGCTGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: LFQSFSNTSRDLMLPLLSTPPSG*RICRCA Trigger: GGCGCAGCGGCAAATCCTCCATCCAGAAGGTGGTGT...GCTCAGCAAGGGCAGCATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR TCA 90 bp | ATGTACTTAGAGAGTAGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCATTGGGTGACATCTTATaGAACACCACCTTCTGGATG | + |
|
Preference number: 4 (lower is better) Translates to: MYLESSFSCTQPAEGLSSLGDIL*NTTFWM Trigger: CATCCAGAAGGTGGTGTTTCATAAGATGTCACCCAA...TGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCTACTCTCTAAGTACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAACACTGGTCTGATGACTaGAGCTTCTGTGAGAAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HRGPCKFATVSHLQEVLQHWSDD*SFCEKS Trigger: TGACTTCTCACAGAAGCTGCAGTCATCAGACCAGTG...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR CCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAACAAGGCTTTCAGACTTaGAGCACTGGTCTGATGACT | + |
|
Preference number: 4 (lower is better) Translates to: HRGPCKFATVSHLQEVLQQGFQT*STGLMT Trigger: AGTCATCAGACCAGTGCTCCAAGTCTGAAAGCCTTG...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR GCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAAGGGGAGCTGTCTGTTaGAATGTAGATTTTGCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: HRGPCKFATVSHLQEVLQRGAVC*NVDFAD Trigger: GTCAGCAAAATCTACATTGCAACAGACAGCTCCCCT...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR TCA 90 bp | CATTATAATGGACTCATTTCTCATGTTCTCCCTGACGGTGTGGCCATCGATGGAGAGAGTCTCATTGGGTaGCATCTTATGAAACACCAC | + |
|
Preference number: 4 (lower is better) Translates to: HYNGLISHVLPDGVAIDGESLIG*HLMKHH Trigger: GTGGTGTTTCATAAGATGTCACCCAATGAGACTCTC...TCCATCGATGGCCACACCGTCAGGGAGAACATGAGAAATGAGTCCATTATAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR TCA 90 bp | TCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATGATCAGGCGAGGAGATGGGCAGTTGTGGAATaGGTTTCTGTACCACCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: SVLNSLCCIVHGHDQARRWAVVE*VSVPPY Trigger: GTAAGGTGGTACAGAAACTCATTCCACAACTGCCCA...TCTCCTCGCCTGATCATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR GCA 90 bp | CACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGCAGGAAGTGCTCCAAAATGACATATATCAATaGTCCTGTGCCCCTGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: HRGPCKFATVSHLQEVLQNDIYQ*SCAPED Trigger: ATCTTCAGGGGCACAGGAGCATTGATATATGTCATT...TTGGAGCACTTCCTGCAGATGACTGACTGTTGCGAATTTACATGGACCACGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATACACCACCTTCTGGATaGAGGATTTGCCGCTGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: LWKITSVSKFFQHIQRSDTPPSG*RICRCA Trigger: GGCGCAGCGGCAAATCCTCCATCCAGAAGGTGGTGT...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | TTTTCCTTTGGATATCACCGTGGTCCATGTAAATTCGCAACAGTCAGTCATCTGTCAGACTTGGAGCACTaGTCTGATGACTGCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FSFGYHRGPCKFATVSHLSDLEH*SDDCSF Trigger: GAAGCTGCAGTCATCAGACCAGTGCTCCAAGTCTGA...CAGATGACTGACTGTTGCGAATTTACATGGACCACGGTGATATCCAAAGGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR TCA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATTTGGGTGACATCTTATaGAACACCACCTTCTGGATG | + |
|
Preference number: 4 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHLGDIL*NTTFWM Trigger: CATCCAGAAGGTGGTGTTTCATAAGATGTCACCCAA...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR GCA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATAATGACATATATCAATaGTCCTGTGCCCCTGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: AGALRVICGQKQFVKSLHNDIYQ*SCAPED Trigger: ATCTTCAGGGGCACAGGAGCATTGATATATGTCATT...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR TCA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATGTAGCTTCAAGCACATaGCAAAGGAGACAAACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LWKITSVSKFFQHIQRSDVASST*QRRQTA Trigger: AGCTGTTTGTCTCCTTTGTCATGTGCTTGAAGCTAC...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | GTTATCATCTCCAGGTCCAAAATATCCCAGCTATTTAAAGTAGGGCTCAAGAGATTCGTAGTCAAAGGTTaGATCAAAGAAGTCCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: VIISRSKISQLFKVGLKRFVVKG*IKEVHL Trigger: CAGATGGACTTCTTTGATCCAACCTTTGACTACGAA...TCTCTTGAGCCCTACTTTAAATAGCTGGGATATTTTGGACCTGGAGATGATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CCA 90 bp | AATTATGAATTCATATCTCAGGCAAAGCAAAGTAGCACAGCTGACACTTGGTGTCTCAAAATTCATGTCTaGGTTAACTTTGTAGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: NYEFISQAKQSSTADTWCLKIHV*VNFVGL Trigger: AAGGCCTACAAAGTTAACCCAGACATGAATTTTGAG...ACACCAAGTGTCAGCTGTGCTACTTTGCTTTGCCTGAGATATGAATTCATAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
||
| CDS-3UTR CAA 90 bp | AGCTTCAGTTGCACACAGCCGGCTGAGGGGCTCTCGTCAGCAGAGAAACTCCACAGCAGGATCCTCGGCTaGGAGCTGTCAGCGCCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SFSCTQPAEGLSSAEKLHSRILG*ELSAPP Trigger: GGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGCT...GTGGAGTTTCTCTGCTGACGAGAGCCCCTCAGCCGGCTGTGTGCAACTGAAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CAA 90 bp | GCTGCCCTTGCTGAGCCTGGCTCTCCCCGATGCCGCACAAAAACTTCCTCTTCTTTCTGGATGGAGGATTaGCCGCTGCGCCGGAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: AALAEPGSPRCRTKTSSSFWMED*PLRRSP Trigger: GGGGCTCCGGCGCAGCGGCAAATCCTCCATCCAGAA...AGAAGAGGAAGTTTTTGTGCGGCATCGGGGAGAGCCAGGCTCAGCAAGGGCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CAA 90 bp | CTGTGGGGAAGTCTTTCTGTCTTAAATTCCCTTTGTTGCATTGTGCATGGTCATTTCTGGATGGAGGATTaGCCGCTGCGCCGGAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LWGSLSVLNSLCCIVHGHFWMED*PLRRSP Trigger: GGGGCTCCGGCGCAGCGGCAAATCCTCCATCCAGAA...ATGACCATGCACAATGCAACAAAGGGAATTTAAGACAGAAAGACTTCCCCACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS-3UTR CAA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATAGCAGGATCCTCGGCTaGGAGCTGTCAGCGCCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LWKITSVSKFFQHIQRSDSRILG*ELSAPP Trigger: GGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGCT...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
||
| CDS GCA 90 bp | TTTTGCCACCAGAGAGGTGCACACACCATCATGCCTAACTACCTGTaGATCAATGACATATATCAATGCTCCTGTGCCCCTGAAGATCAT | + |
|
Preference number: 5 (lower is better) Translates to: FCHQRGAHTIMPNYL*INDIYQCSCAPEDH Trigger: ATGATCTTCAGGGGCACAGGAGCATTGATATATGTCATTGATGCACAGGTAGTTAGGCATGATGGTGTGTGCACCTCTCTGGTGGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS GCA 90 bp | CCTTTTCTCTGCCTTTTTGCCACCAGAGAGGTGCACACACCATCATaGCTAACTACCTGTGCATCAATGACATATATCAATGCTCCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: PFLCLFATREVHTPS*LTTCASMTYINAPV Trigger: CACAGGAGCATTGATATATGTCATTGATGCACAGGTAGTTAGGCATGATGGTGTGTGCACCTCTCTGGTGGCAAAAAGGCAGAGAAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS GCA 90 bp | CACACCATCATGCCTAACTACCTGTGCATCAATGACATATATCAATaGTCCTGTGCCCCTGAAGATCATTTCGTAGTCAAAGGTTGGATC | + |
|
Preference number: 5 (lower is better) Translates to: HTIMPNYLCINDIYQ*SCAPEDHFVVKGWI Trigger: GATCCAACCTTTGACTACGAAATGATCTTCAGGGGCACAGGAGCATTGATATATGTCATTGATGCACAGGTAGTTAGGCATGATGGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
||
| CDS-3UTR CAA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATTTTCGTAGTCAAAGGTaGGATCAAAGAAGTCCATCT | + |
|
Preference number: 5 (lower is better) Translates to: AGALRVICGQKQFVKSLHFRSQR*DQRSPS Trigger: AGATGGACTTCTTTGATCCAACCTTTGACTACGAAA...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| CDS-3UTR CAA 90 bp | CACTACTCAAGTGAAGGCCTAGGGAAGCATATAAAACTCAGTTTCCTACTGTTTGTCATCATTGGCCCTTaGATGAATGTCCCTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: HYSSEGLGKHIKLSFLLFVIIGP*MNVPLC Trigger: ACACAGAGGGACATTCATCAAAGGGCCAATGATGAC...AAACAGTAGGAAACTGAGTTTTATATGCTTCCCTAGGCCTTCACTTGAGTAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
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| CDS-3UTR CAA 90 bp | GCAGGAGCCCTTAGGGTCATCTGTGGTCAAAAACAATTCGTAAAGAGCCTACATGTTGTATTATTCAGCTaGATAATGGCCATCGATTCT | + |
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Preference number: 5 (lower is better) Translates to: AGALRVICGQKQFVKSLHVVLFS*IMAIDS Trigger: AGAATCGATGGCCATTATCAAGCTGAATAATACAAC...ATGTAGGCTCTTTACGAATTGTTTTTGACCACAGATGACCCTAAGGGCTCCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
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| CDS-3UTR CAA 90 bp | CTGTGGAAAATCACTTCTGTTTCAAAGTTTTTCCAACACATCCAGAGATCTGATTTCCAAAGTGGGCAGTaGTGGAATGAGTTTCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: LWKITSVSKFFQHIQRSDFQSGQ*WNEFLY Trigger: GTACAGAAACTCATTCCACAACTGCCCACTTTGGAA...ATCAGATCTCTGGATGTGTTGGAAAAACTTTGAAACAGAAGTGATTTTCCACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
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| CDS CAA 72 bp | CCGCTGCGCCGGAGCCCCATAAGCAGGATCCTCGGCTaGGAGCTGTCAGCGCCGCCCGGGCCGCAGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: PLRRSPISRILG*ELSAPPGPQPP Trigger: CGGCGGCTGCGGCCCGGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGCTTATGGGGCTCCGGCGCAGCGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| CDS GCA 72 bp | CACGCCGTAGCCGAAGTCCTTGGGGAACGAGTCGGCTaGGCCGTAACTGCCGGCCAGGGGCGTCTCCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: HAVAEVLGERVG*AVTAGQGRLLR Trigger: GCGGAGGAGACGCCCCTGGCCGGCAGTTACGGCGCAGCCGACTCGTTCCCCAAGGACTTCGGCTACGGCGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| CDS GCA 72 bp | GGAGACAAACAGCTTTCCTCCTTTTCTCTGCCTTTTTaGCACCAGAGAGGTGCACACACCATCATGCCTAAC | + |
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Preference number: 6 (lower is better) Translates to: GDKQLSSFSLPF*HQRGAHTIMPN Trigger: GTTAGGCATGATGGTGTGTGCACCTCTCTGGTGGCAAAAAGGCAGAGAAAAGGAGGAAAGCTGTTTGTCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| CDS GCA 72 bp | CAGAGAGGTGCACACACCATCATGCCTAACTACCTGTaGATCAATGACATATATCAATGCTCCTGTGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: QRGAHTIMPNYL*INDIYQCSCAP Trigger: AGGGGCACAGGAGCATTGATATATGTCATTGATGCACAGGTAGTTAGGCATGATGGTGTGTGCACCTCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| CDS CCA 72 bp | TCCTGTGCCCCTGAAGATCATTTCGTAGTCAAAGGTTaGATCAAAGAAGTCCATCTGCCCAGGAAAATCCCA | + |
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Preference number: 6 (lower is better) Translates to: SCAPEDHFVVKG*IKEVHLPRKIP Trigger: TGGGATTTTCCTGGGCAGATGGACTTCTTTGATCCAACCTTTGACTACGAAATGATCTTCAGGGGCACAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| CDS GCA 72 bp | TGCCTTTTTGCCACCAGAGAGGTGCACACACCATCATaGCTAACTACCTGTGCATCAATGACATATATCAAT | + |
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Preference number: 6 (lower is better) Translates to: CLFATREVHTPS*LTTCASMTYIN Trigger: ATTGATATATGTCATTGATGCACAGGTAGTTAGGCATGATGGTGTGTGCACCTCTCTGGTGGCAAAAAGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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| CDS TCA 72 bp | CTTGTTGGTACTTTCCAAAAAGAGAGTCTCATTGGGTaGCATCTTATGAAACACCACCTTCTGGATGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: LVGTFQKESLIG*HLMKHHLLDGG Trigger: TCCTCCATCCAGAAGGTGGTGTTTCATAAGATGTCACCCAATGAGACTCTCTTTTTGGAAAGTACCAACAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030399.7 ENSMUST00000155757.8 |
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| CDS GCA 72 bp | CATGTAGTCGTCCTGTGCATCAATGACATATATCAATaGTCCTGTGCCCCTGAAGATCATTTCGTAGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: HVVVLCINDIYQ*SCAPEDHFVVK Trigger: TTTGACTACGAAATGATCTTCAGGGGCACAGGAGCATTGATATATGTCATTGATGCACAGGACGACTACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030399.7 |
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| CDS GCA 72 bp | ATGCCTAACTACCTGTGCATCAATGACATATATCAATaGTCCTGTGCCCCTGAAGATCATTTCGTAGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: MPNYLCINDIYQ*SCAPEDHFVVK Trigger: TTTGACTACGAAATGATCTTCAGGGGCACAGGAGCATTGATATATGTCATTGATGCACAGGTAGTTAGGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155757.8 |
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