RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RRAGB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041658

Ensembl transcript IDs: ENSMUST00000039720.11, ENSMUST00000144175.3

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CAAGATCTTGATATACATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCCTGTTTCCCAAATGCTaGGATCACAGGCATGAGCTA +
Preference number: 2 (lower is better)
Translates to: QDLDIHPWPGPPYVDRLALFPKC*DHRHEL
Trigger: TAGCTCATGCCTGTGATCCCAGCATTTGGGAAACAG...GGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATGTATATCAAGATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
3UTR-3UTR CCA 90 bp CAAGATCTTGATATACATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCGAAGAAATACAGACGTaGTGGGCATCACAATATTTC +
Preference number: 2 (lower is better)
Translates to: QDLDIHPWPGPPYVDRLAEEIQT*WASQYF
Trigger: GAAATATTGTGATGCCCACCACGTCTGTATTTCTTC...GGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATGTATATCAAGATCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
3UTR-3UTR CCA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATGCTGGGAAAGACTTTaGCATACACAACTATTAAAA +
Preference number: 2 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQCWERL*HTQLLK
Trigger: TTTTAATAGTTGTGTATGCCAAAGTCTTTCCCAGCA...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR GCA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAAGGCTGCATTTGGCATTaGCCACCCAAGCGATCCTTC +
Preference number: 4 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQGCIWH*PPKRSF
Trigger: GAAGGATCGCTTGGGTGGGCAATGCCAAATGCAGCC...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp CCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCCCTCACTTCCATACTCTaGAAAGAGGCAGCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: PWPGPPYVDRLALNLQQSLTSIL*KEAASL
Trigger: CAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTGAG...GGATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp TCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCAGGAGGCTCCACTTTTaGGCCCACATTCTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: SLAWTSLCRQAGLKLAAIRRLHF*AHILFL
Trigger: GAGAAAGAGAATGTGGGCCCAAAAGTGGAGCCTCCT...GATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR TCA 90 bp CCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCCAATAGCCTCAAGGCATaGCTGATAGTAGTGCATGTC +
Preference number: 4 (lower is better)
Translates to: PWPGPPYVDRLALNLQQSNSLKA*LIVVHV
Trigger: GACATGCACTACTATCAGTCATGCCTTGAGGCTATT...GGATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp TCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCGGACCTTTTTCTTCATaGCTGCATTTGGCATTGCCC +
Preference number: 4 (lower is better)
Translates to: SLAWTSLCRQAGLKLAAIGPFSS*LHLALP
Trigger: GGGCAATGCCAAATGCAGCCATGAAGAAAAAGGTCC...GATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp CCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCCTGCAGAAGGAATGGATaGATCAGACATCACGACCAT +
Preference number: 4 (lower is better)
Translates to: PWPGPPYVDRLALNLQQSCRRNG*IRHHDH
Trigger: ATGGTCGTGATGTCTGATCCATCCATTCCTTCTGCA...GGATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAAGAGAAGACACTGTTTTaGTCCATCCACTCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQEKTLF*SIHSLQ
Trigger: CTGGAGAGAGTGGATGGACCAAAACAGTGTCTTCTC...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR GCA 90 bp CAAGATCTTGATATACATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCGTTGATCAGAGTAGCTaGAGAAGGAATGGATGGATC +
Preference number: 4 (lower is better)
Translates to: QDLDIHPWPGPPYVDRLAVDQSS*RRNGWI
Trigger: GATCCATCCATTCCTTCTGCAGCTACTCTGATCAAC...GGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATGTATATCAAGATCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
3UTR CAA 72 bp TGTAGACAGGCTGGCCTTAAACTTGCAGCAATCCTCTaGCCTCTGTTTCCCAAATGCTGGGATCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: CRQAGLKLAAIL*PLFPKCWDHRH
Trigger: ATGCCTGTGATCCCAGCATTTGGGAAACAGAGGCAAGAGGATTGCTGCAAGTTTAAGGCCAGCCTGTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAAGACGACGTGTGTCTCTaGCAATATAATTTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQDDVCL*QYNLQR
Trigger: TCTTTGCAAATTATATTGCCAGAGACACACGTCGTC...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR GCA 90 bp CGTATACATTACATCAACATCATAGACACCTCATCTTCTAACTCCTCACGCTATGCTTCTGGAGAATTCTaGAGAATAGCCTCAAGGCAT +
Preference number: 4 (lower is better)
Translates to: RIHYINIIDTSSSNSSRYASGEF*RIASRH
Trigger: ATGCCTTGAGGCTATTCTGCAGAATTCTCCAGAAGC...ATAGCGTGAGGAGTTAGAAGATGAGGTGTCTATGATGTTGATGTAATGTATACG
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp CGTATACATTACATCAACATCATAGACACCTCATCTTCTAACTCCTCACGCTATATTTTCTCAAATCGGTaGGCATCTCGCTGTTCTTTA +
Preference number: 4 (lower is better)
Translates to: RIHYINIIDTSSSNSSRYIFSNR*ASRCSL
Trigger: TAAAGAACAGCGAGATGCCCACCGATTTGAGAAAAT...ATAGCGTGAGGAGTTAGAAGATGAGGTGTCTATGATGTTGATGTAATGTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CCA 90 bp GAACACTTAAACACCATTAGAGTCATGTTATCAGAACACTTACATATATCGCCTCCAAGCAAAAGATTTTaGCTTCTGGAGAATTCTGCA +
Preference number: 4 (lower is better)
Translates to: EHLNTIRVMLSEHLHISPPSKRF*LLENSA
Trigger: TGCAGAATTCTCCAGAAGCCAAAATCTTTTGCTTGG...AGGCGATATATGTAAGTGTTCTGATAACATGACTCTAATGGTGTTTAAGTGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR TCA 90 bp GAACACTTAAACACCATTAGAGTCATGTTATCAGAACACTTACATATATCGCCTCCCAGAAATCGAACATaGGAATGTTCTACATCAAAT +
Preference number: 4 (lower is better)
Translates to: EHLNTIRVMLSEHLHISPPRNRT*ECSTSN
Trigger: ATTTGATGTAGAACATTCTCATGTTCGATTTCTGGG...AGGCGATATATGTAAGTGTTCTGATAACATGACTCTAATGGTGTTTAAGTGTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp TCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCTCTTCATGGCTGCATTaGGCATTGCCCACCCAAGCG +
Preference number: 5 (lower is better)
Translates to: SLAWTSLCRQAGLKLAAISSWLH*ALPTQA
Trigger: CGCTTGGGTGGGCAATGCCAAATGCAGCCATGAAGA...GATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp CCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAATCCAAAGAGGCAGCCAGCTaGCTACAGCTCAGCTTGAAT +
Preference number: 5 (lower is better)
Translates to: PWPGPPYVDRLALNLQQSKEAAS*LQLSLN
Trigger: ATTCAAGCTGAGCTGTAGCAAGCTGGCTGCCTCTTT...GGATTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAACTGGCATTGCGGATGTaGATCAGAGTAGCTGCAGAA +
Preference number: 5 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQLALRM*IRVAAE
Trigger: TTCTGCAGCTACTCTGATCAACATCCGCAATGCCAG...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp CAAGATCTTGATATACATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCACATTTCGGAAGATGTaGTCACGCTGGCTAGTGAAA +
Preference number: 5 (lower is better)
Translates to: QDLDIHPWPGPPYVDRLATFRKM*SRWLVK
Trigger: TTTCACTAGCCAGCGTGACAACATCTTCCGAAATGT...GGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATGTATATCAAGATCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp CATCCCTGGCCTGGACCTCCCTATGTAGACAGGCTGGCCTTAAACTTGCAGCAAACCAAGCAAAAGATTTaGGCTTCTGGAGAATTCTGC +
Preference number: 5 (lower is better)
Translates to: HPWPGPPYVDRLALNLQQTKQKI*ASGEFC
Trigger: GCAGAATTCTCCAGAAGCCAAAATCTTTTGCTTGGT...TTGCTGCAAGTTTAAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAGGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS-3UTR CAA 90 bp GAACACTTAAACACCATTAGAGTCATGTTATCAGAACACTTACATATATCGCCTTTCCATGAAGGTATCTaGTCCACCACAATCCCACAG +
Preference number: 5 (lower is better)
Translates to: EHLNTIRVMLSEHLHISPFHEGI*STTIPQ
Trigger: CTGTGGGATTGTGGTGGACAAGATACCTTCATGGAA...AGGCGATATATGTAAGTGTTCTGATAACATGACTCTAATGGTGTTTAAGTGTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS CAA 90 bp CCCACCCAAGCGATCCTTCCGGCTCCCCTAGAGGAGGCTCCACTTTaGGGCCCACATTCTCTTTCTCTGTCTTTTTCTCGGAGTCAGATT +
Preference number: 6 (lower is better)
Translates to: PTQAILPAPLEEAPL*GPHSLSLSFSRSQI
Trigger: AATCTGACTCCGAGAAAAAGACAGAGAAAGAGAATGTGGGCCCAAAAGTGGAGCCTCCTCTAGGGGAGCCGGAAGGATCGCTTGGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039720.11
ENSMUST00000144175.3
CDS TCA 72 bp CACAGGTTCAAAACCAGGTTTCCCAGAAATCGAACATaGGAATGTTCTACATCAATTGTTGCACCAAGACGA +
Preference number: 6 (lower is better)
Translates to: HRFKTRFPRNRT*ECSTSIVAPRR
Trigger: TCGTCTTGGTGCAACAATTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144175.3
CDS CAA 90 bp GGTTTCCCAGAAATCGAACATGAGAATGTTCTACATCAAATGTCTTaGTATTTCCAACAGAGTCTACGAGAGAGTAGGTGCTCAAACTGC +
Preference number: 6 (lower is better)
Translates to: GFPEIEHENVLHQMS*YFQQSLRESRCSNC
Trigger: GCAGTTTGAGCACCTACTCTCTCGTAGACTCTGTTGGAAATACAAAGACATTTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11
CDS TCA 72 bp CACAGGTTCAAAACCAGGTTTCCCAGAAATCGAACATaGGAATGTTCTACATCAAATGTCTTTGTATTTCCA +
Preference number: 6 (lower is better)
Translates to: HRFKTRFPRNRT*ECSTSNVFVFP
Trigger: TGGAAATACAAAGACATTTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039720.11